LOC110508916 (LOC106605783)


Basic Information

Item Value
gene id LOC110508916
gene name LOC106605783
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19062094 ~ 19077953 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940840.1
gagaggcagaggggaaaaccagggatagagggagacagggagaggggggaaccatgggtagagagaaagggaaggacaAAAGTTGAATGTTGACAGAGGGAGTGTGGATATTAATCGGGAGATAAacaaaaaggaggagagagagagggggggaaaaaagaaagaaaaaaacaaataGATACACATTGACAGAGTGGACTGGACTTCAATGAAGCACTGACATCAGCAAAAtaaagggggagaaaggaggtCACTGCAGTCCAAAGTAGGTACTGTGCACTGTAGTTCCTTAAGCACGTTTACTATGAAACAGGAGTTAGGACacgcaaagacagacagacagacgttcaCTACACGATTGAACCATGTTGCTGAAGGAGTATAGAATATGCATGCCACTAACTGTGGAAGAGtataagATTGGGCAGCTGTACATGATCAGTAAACACAGTAATGAGCAGagcggaggaggggagggagtggaggtGGTGAGGAACCAACCAGACACACATCCCCAACATGGCCTGGGACAGCTCACTGAGAAACGCATCTACCTCAATAGtaaACTGCCATCCTGGGTGAGTGTGTTTGTCCCCAGGGTCTTCTATGTGACAGAGAAGGCCTGGAACTTCTACCCTTACACCATCACAGAGTACTCAGTCTCCTTCCTTCCCAAGTTCAGTATCCGTATTGAGACCAGGTTTGAGAACAACAATGGTGACAACAATAATGTATTTGGAGACAGGCCCACCCCTGCAGAGAGCGTGAGCCACCTGGATATCCTTATTGACCCCATCCCTGACAAACACTACAAGGAGACAGAGgacCTGAGTCGCTGGGTGTCTGAGAAGACGGGCCGAGGCCCCCTGGTGGAAGGGTGGCGTAAGGACAGCACCCCCATCATGTGCTCCTATAAGAGGGTGCAGTGCAGCTTTGAAGTCTACGGCTTCCAGGGAAAGACTGAGGACTTCATACACAGGAACATCCAGGACATCCTACTGGTGGGGCACAGACAGGCTGTGGCCTGGACAGACGAATGGCATGGGATGAGTTTGGAGGATGTGAGAGAGTATGAGCGACAGATACAGGAACAGACCAACAGCAAACTAAAATCAacccagaacaacaacacagCTGCCCCTCGTCCGGCATACTCGCGCTCTATGTCCGTCACAGATGAGCGCTCTCTGAAGAAGATGGGAGTGAAGACTATGGCCATGTCagacccctccacctccacactgcCTCATAGCACTGTCCGCCTTAACTCCACCCCCGAGTAACACACACACGTTCATACTGATGCATCAATTCCTGCCTGCTTAAACCCCTCCCCTCCGTAAACCCCTCAGTAACTACACTGCAGCAGTTCCTTTTTGTTTTACGGCCATCCACCACAGACACATTTAACCAATAACGCTACACTGTCCACAGAAGCAGCACTTAGACCACTCAGGTCCTACCCCTTTCTCCAGCTGTAACTATATAACCCAATCCCCTGTCCTACCCCTTTCTCCAGCTGTAACTATATAACCCAACCCCCTGTCCTACCCCTTTCTCCAGCTGTAACTATATAACCCAACCCCCTGTCCTACCCCTTTCTCCAGCTGTAACTATATAACCCAATCCCCTGTTTtttagtttgcatcccaatattacactttatatacatgaaAGTAGACTGAAATATTacaaactgtttgacatagaaacaccaattTTTGGcaggtaaaaaaaaattatgaaattatgaataacattccacccatgaggcctctaggtaatttgactgcaggaaagggctactagAGTGGATATAATGGCAGGGGAGTGCCGTGGAtccacagagccccccccccccccatcccattGGTCAGACTGGGGTTATTGATCCGGTGTATCGAGGCGCTGTATTGGCTGCTTGATCGTTCTGCTCCATGCAGCAAATGGCTGAAACGGGGCTAACCTTCACTGAGGAGTCAATAGGATGGCTGTTTTAAACATGATTAACTTCTGATCTATGGTAATGGCTGCAACATGACCTCTGTACAGGCTGTGGAATAATCTGACATACAGGATGAATATAATTTATAACTAGGTTTATATTGACACAttatacatatactgtatatttggcTGTTTAGTCTATTGTAATGGAAGTCCATTGTCAGCTATGTACCTCttgtatgaatgaatgaataaaagCCTTTATCTCCTGTA

Function

NR:

description
cytoplasmic phosphatidylinositol transfer protein 1-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940840.1 True 2220 mRNA 0.47 10 19062094 19077953

Neighbor

gene id symbol gene type direction distance location
josd2 josd2 coding downstream 304298 18755291 ~ 18757796 (-)
LOC110536927 LOC106577129 coding downstream 353463 18695833 ~ 18708631 (-)
LOC110536908 LOC106605765 coding downstream 368274 18688948 ~ 18693820 (-)
grwd1 grwd1 coding downstream 389684 18662604 ~ 18672410 (-)
LOC110534340 LOC106605761 coding downstream 415210 18627912 ~ 18646884 (-)
cacng6b LOC106606119 coding upstream 406375 19484328 ~ 19499142 (-)
u2af2a u2af2 coding upstream 428715 19506668 ~ 19513981 (-)
LOC110534365 LOC106576897 coding upstream 436326 19514279 ~ 19524832 (-)
LOC110537080 LOC106576890 coding upstream 450042 19527995 ~ 19548154 (-)
LOC110537104 LOC106605828 coding upstream 476965 19554918 ~ 19556242 (-)
G119646 NA non-coding downstream 32589 19029003 ~ 19029505 (-)
G119616 NA non-coding downstream 73062 18974934 ~ 18989032 (-)
G119594 NA non-coding downstream 110678 18911359 ~ 18951416 (-)
G119605 LOC106577106 non-coding downstream 127882 18929735 ~ 18934212 (-)
G119598 NA non-coding downstream 139430 18920955 ~ 18922664 (-)
G119701 LOC106605741 non-coding upstream 53929 19131882 ~ 19132176 (-)
G119704 NA non-coding upstream 56895 19134848 ~ 19135061 (-)
G119705 NA non-coding upstream 58019 19135972 ~ 19136231 (-)
G119644 NA non-coding upstream 61224 19139177 ~ 19139402 (-)
G119708 LOC106591967 non-coding upstream 65748 19143701 ~ 19144055 (-)
G119663 NA other downstream 13064 19048307 ~ 19049030 (-)
G119512 LOC105019016 other downstream 260707 18799500 ~ 18801387 (-)
LOC110536756 ndufa3 other downstream 519597 18541050 ~ 18543176 (-)
G119087 LOC106605728 other downstream 585341 18476454 ~ 18476753 (-)
LOC118944062 LOC106575151 other upstream 615736 19692971 ~ 19695564 (-)
LOC110537275 grl1 other upstream 846145 19924063 ~ 19928533 (-)
G121046 NA other upstream 1133115 20211068 ~ 20212367 (-)
LOC110509624 ret1 other upstream 1384729 20462682 ~ 20465854 (-)

Expression


Co-expression Network