LOC110534362 (LOC106575226)


Basic Information

Item Value
gene id LOC110534362
gene name LOC106575226
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19392737 ~ 19433631 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940854.1
CCACCGCAGCAGTGCTCATAgatagtgtgagtgtgtgagtgaaaaAGAGCGGGAGTTGGAGATTGAGAGGATGGGTAAAGGAGCGTAAAGGGGTAACACACACAATCGAGAGAGCGAGtgaaagagggggtagagagatagagagagagaactgtgaaATCAGCCAACACTCCCAGACGCAAGGTTCTTGATTACTGTCAAGCGCACACCATTCGAATATCGCTCCTGTGACAGCCAGGaTGAGTTCGTGCAGTAGCAGAGCGCTGACCATCCTGTCCACGGTGTTTGGGGCGTGTGGTCTGCTGCTGGTGGGCGTGGCTGTGTCTACAGACTACTGGCTGTTGATGGAGGAGGGCATCGTGCTGCAGCAGAACCAGAGCATGGAGGTCAAGATGGCCCTGCACTCTGGCCTCTGGAGGGTCTGCTTCGTGGCTGgGACAGAGAACGGGAGATGTGTGGCATCAGAGTATTTCACTGAGCCAGAGATAGAGATCACCACAGAGAATACTGCTAATATTCTGAAGATGGTGCGGACGGCCACTCCGTTCCCCATGGTGTCTCTGCTCTTCGTCTTCACGGCCTTTGTCATCAGTAACATCGGACACATACGGCCCCAGCGCACCATCCTGGCCTTCGTCTCCGGGATCTTCTTCATCCTCTCAGgcCTGAGTCTGGTGGTGGGGCTGGTGCTCTACATCTCCAGTATTAATGATGAAGTAATGAACAGACCGAGGGAGCCTGAACAGTTCTTCAACTACCACTACGGCTGGTCGTTTGCCTTCGCAGCCTCCTCCTTCCTACTCAAGGAGggGGCTGGGGTGATGTCAGTCTATCTGTTTATGAAGCGTTATGCTGAGGAGGAGATGTACCGCCCCCACCCAGCCCTCTACCGCCCCCGTCTGTCTGAGTGCAGCGACTACAGCGGCCAGTTCCTCCACCCTGAGACCTGGCCTCCTCCTAAGAGGGGCCGCAGTGACTCCCGGGCCTCCAGCGACATCTCCATCCAGATCAACCAGACCCCCCCGCAGCCCACCAAAAACCCCCTGCAGGGCAACCAAGGTGGGGGCATGGGGTCCAACATGGGCCCTGGGTCTGGGTCCTCCTCTGGAGCTAGCTACCAGATGCCCCCACCGTCTGGGGCCTACAACACCCACACACTTCAACACCAACACTCACACGGTAACTCCCAGGCCATGGCCATGCCCCCTTCCACCGGCCCCCCTcattaccacacacacatgcacatggacGCCTCCCCttgttagagagagggagcaagggaCAGGGGTGCGCTGATGGTGGACTATCACtcccatagacacacacacatttatgatgaaatacaatatacagtacatatatagagagagtaatgctatagggggagatggagagagatggagggaggtggagatggagggaggtggagatggaggtaGGAAGATGCAGGCagctggagatggagatggacagaaaagagggagggagaaagtaaGTGTGAAGAGCAAGAAAGCTGGAGTAAGTGTGAAAAGGGAGAAGGATTCAGGGATTAGAGTTAACATACATTTGGTATTAAAAGCtgagagatgggcagagagagagaaagagggttcaggagaggtggaggagttgtcaaggatagagagatgaggggggtggagagaaagtgacagagcaAAAAGTATGTGATTTCTTGAAAGACTTTAGAGGTTAGCATCTGTGACAAAAGGGgctgagagggagaaagggagagacagggagagggagagagaatgagagagacaatgagagggggagagagagggagaaagggagagagggagaaagggagagacagggagaatgaGAGGCTGCAGCTAAACCTGAACCTACCGCAGTTCTGCGGAAATGAGGGATTTGTATTCACTTGAGATGTACAACGCTAAGCACTGTCTTTCACTCCTACACACTTATATGTGCATAGGTTTATACATATACTTATCCAtggtaatgataataataataacttgagttaaaataataaaacaatattaGAATATCTGTAAGAATATATGAA

Function

NR:

description
LOW QUALITY PROTEIN: voltage-dependent calcium channel gamma-7 subunit-like

GO:

id name namespace
GO:0006816 calcium ion transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K04872 CACNG7; voltage-dependent calcium channel gamma-7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940854.1 True 2056 mRNA 0.52 6 19392737 19433631

Neighbor

gene id symbol gene type direction distance location
LOC110512786 LOC105019084 coding upstream 45437 19307576 ~ 19347300 (+)
LOC110503718 LOC102193556 coding upstream 133663 19131905 ~ 19259074 (+)
LOC110520830 LOC106605779 coding upstream 392527 18994838 ~ 19000210 (+)
LOC118938275 stl2 coding upstream 401370 18984795 ~ 18991367 (+)
stl2 stl2 coding upstream 415226 18971209 ~ 18977511 (+)
LOC110537022 LOC106576929 coding downstream 10500 19444131 ~ 19481383 (+)
LOC110537095 LOC106576906 coding downstream 92532 19526163 ~ 19528660 (+)
LOC110537107 LOC106605819 coding downstream 132248 19565879 ~ 19579511 (+)
LOC110537165 LOC106605824 coding downstream 163882 19597513 ~ 19599416 (+)
LOC110537142 LOC106576877 coding downstream 203803 19637434 ~ 19645326 (+)
G119792 NA non-coding upstream 1985 19390447 ~ 19390752 (+)
G119785 NA non-coding upstream 40019 19352427 ~ 19352718 (+)
G119445 NA non-coding upstream 42321 19350208 ~ 19350416 (+)
G119434 NA non-coding upstream 63325 19326050 ~ 19329412 (+)
G119429 NA non-coding upstream 85815 19304421 ~ 19306922 (+)
G119844 NA non-coding downstream 29697 19463328 ~ 19463916 (+)
G119855 NA non-coding downstream 58790 19492421 ~ 19492639 (+)
G119856 LOC106606119 non-coding downstream 59294 19492925 ~ 19494124 (+)
G119795 NA non-coding downstream 71235 19504866 ~ 19506500 (+)
G119866 NA non-coding downstream 85310 19518941 ~ 19519677 (+)
G119245 stl2 other upstream 431272 18934673 ~ 18992769 (+)
G119160 NA other upstream 720417 18670513 ~ 18672320 (+)
G119153 LOC106605761 other upstream 756696 18633839 ~ 18636041 (+)
LOC110536658 LOC106577300 other upstream 915603 18457284 ~ 18481741 (+)
G119794 u2af2 other downstream 73020 19506651 ~ 19507338 (+)
LOC110537226 LOC106575133 other downstream 243104 19676656 ~ 19683059 (+)
G119952 nat14 other downstream 268468 19702099 ~ 19703788 (+)
LOC110537243 LOC106576860 other downstream 334639 19768270 ~ 19778335 (+)

Expression


Co-expression Network