cacng6b (LOC106606119)


Basic Information

Item Value
gene id cacng6b
gene name LOC106606119
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19484328 ~ 19499142 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940896.1
acttcaactgtacattacaGTCAGTGTAATGTAGAACATTTCTTTCAGAGAGGGTACTAATAGCAACCTGCGAGGAGGATCTGTAGGGGCGGACCCAGGGATACCTGGCTGGGTTATTGGTCGGCGTCTGGGGAAAACAATAGCCTTTCCTTATGGCTGTCTGGTCCAGAGCCAGCACAGTTCCTAATGGAGGATTCAACACTCACCTTGACCCTGACAGCAGTCTGCTCTAATAGCTTGTATCTGGCTCATACTCTCTCTGGTGTATAAGACAGCAACAAAAACATGTCCAATCCAGGAAGTTCTTTAATAAGAAGAAATGATTTTGGTGTTCCAGTATAATCAGACGCCATCCTTCCTCATCacccagtcctctcctcctccacctttctCTCATCACTCCCTTTCTCCCATCTTGTCTACTCCCATACTgaaccatccatctctctctccatcactccctttcTCCCATATTGTCTACTCCCATACTGAaccatccatctctttctctccatcactccctttcTCCTATCTTGTCTACTCCCATACTGAACCATCCATCTCTCTCATCACTCCCTTTCTCCCATATTGTCTACTCCCATACTGAaccatccatctctttctctccatcactccctttcTCCCATCTTGTCTACTCCCATACTgaaccatccatctctctctccatcactccctttcTCCCATATTGTCTACTCCCATACTGAaccatccatctctttctctccatcactccctttcTCCTATCTTGTCTACTCCCATACTGAACCATCCATCTCTCTCatcactccctttctctcatcTTGTCTACTCCCATACTGAACCATCCATCTCTCTCATCACTCCCTTTCTCCCATCTTGTCTACTCCCATACTgaaccatccatctctctctcccctttcctcctcccgTTCTCCATCCCCACATCCACCTCTGAACTGCTGTTATCTGTGTCTCTACCTTCCTTCTGTCTTCAACCTTCCTTTCTTCTTTTTGGGGTTCACCCCCTTCAATTATTTCCCTGCTTCTCTCTTTTCACCCTCTTTCCCATcctcttccctctttccctccctttcctctctccatccgGCCTCTGTCGGCCTCTGGTAGAGGTCACCATGTGGGCCAACTACATTGTCCAGCCGGAGGAGGATGGCCGTATGGGGGTGGTAGGAGCAGGACCCCATGGGGGCCTGGCAGGGGTGAAGGGAGTTGGGCGTGCTACAAGGCGGACCCCTAGGATGAGTGACAACCAGGAGGGGAAGATCAAGCTGGCGTTCTTTGTGGCCATTGTGGGCGTGACCCTGACAGTGCTGGGGGTGGGAACAGAGTTCTGGGTGGAGCTGGCCACGCCCAAGACCTGGAGTAACAACCAGACGTGTCAGACAGCCCACTACGGCCTGTGGAAGGGGTGTACCCGCACCCTGTGGGTGGATGACATCAaccccgagagagagagctgtggccCCGCCGACCTGCCCGGAGAATCGAACTGCACTTACTTCAAATTCTTCACCAATGGAGACAACGCAGTCATATTTATGAAGACAACCCACAAGAACCTGAACATAGCGGCTGCTATCCTAGCAATGATAGCTCTGTCTATGATGGTGATGGGAGCAATCTGTATCACCATGTCCCTCAGTAAAGGAGTGCCCTTCTTCCTCAAGCCCGCCTCCTTCTGCTTCATCCTATCAGgtcTACTGGTCCTGCTGTCTATACTGGTGTTTCACCAGTCAGTGTTGGCCCTGTTGTCATCTGACCACTCCATACCGCTCCACCACGAGCTCTCCTGGTCCGTGGCCTGTGTGGGCTTCGCTGGGGCCATCCTCATCATGGGGGGGATCCTTTTCCTGATCCTCTCCCTCCCCTATAGCCCATGGGAAAAATGTCTGCCTCAACGCAACAGCAGCACTACCTAGCACATGGGAGGCCCAAAAGCTGTGGGAAAAAAATGGAGTTTTATATCAGGATCGCAAtcaaactccagtcctcgagggaaGCACTGTCTACTGGCTTTAGTTGTCAGGTATAAATCAGACACTGATCAGAACAACTAAAACCAGTAGACACTGATGCCACCCAGGAGTTGAGTTGGAGACCCCTGTTTATATTATCAGTGATATTGTCAAACTAGACTGAAAGACTGACTAACTTGTAGGTCGACACATTGTTTACTTAATGCAATAACAATGATGCTCACTAACTGTGCCTTGAACTCTACAAGCCTGCCCTAAAGCCTGCGACCTTACCAGAAAACACTACGTAGACCACAACTTCTCCACGTTTTGGCATCATGACCAACCTATAGCTTTTAGAAGTTTCTGATGACCTACCAAAGAACAAGCAATGTTTCTAAGCAGAACCCAGTCTTTACCAGGGGGGTAATGCTGGgttaaacaaaaccaaagcatggattgatGTCTTAACTTGTCCATTGACTGCtaacagggtaaggaaaccaatatgtcatttAGTTATTGAACTAGTTCTTTAAACACAACGCCAACCACACTGTAGTTGTAGATAAAGACCCAGCAGTGGGGTGCAGCATCCTGTCTGTACTATGAACTATGTACTAACCATTACTTATTGATAATGTTACTTAGCCAATTAAATGGTAACAGTGTAACCATGGTAACATGTAGGTCACTACCGTTGCTAAGGGAGGAGATGCTATATTGTTTCCAGGAAGTGGCATAGCCATCCCTGCAACATGAAACGCCTTGCAGGTTGTCACTATTAATCTATTATGAATGATTATGGCGTCTTACACTTAATACCTAGAAATAATATATTCTCTATTTATTATCTACACATTGTCCACATGAATGAATGTTGTTTTTACGTAAGAATGTGTGAATGATTTAATGTATGTATGGAAGATAAAGATTTATATTTGAGAGTGTATTGTATAGACTCACTTTACAAGCACAGCTCTGTATATAAAATATgtgtttgtattttatttataccTGCACACTGTAGCCTTTTGTTCAAGCTTAGGGgggtgtttttagtttttagctTATTCAAACCCTTTTTTCATCATGTGTTTTATTTGTCTTAATAAAGCCCACCTTGTCTTTCTCTACCTACATGTTTGTTTGGGGAAATGCACATTGTGCCTAAATGGTCCTATGATCATATGTATGTCTCACTGGGTTTGCTTTTGAAATAAATAGATTTGACATAAGAAA
>XM_036940887.1
ctctctctctctctctctctctctctctctctctccccccctctccctctccaacacTCCCAACTTTCTCCCCTCTATTAAATTCCAAGCTTCTTTGAATCTGAAGTGAACAACATATTCCAAACAGGTGTTCCAGTATAATCAGACGCCATCCTTCCTCATCacccagtcctctcctcctccacctttctCTCATCACTCCCTTTCTCCCATCTTGTCTACTCCCATACTgaaccatccatctctctctccatcactccctttcTCCCATATTGTCTACTCCCATACTGAaccatccatctctttctctccatcactccctttcTCCTATCTTGTCTACTCCCATACTGAACCATCCATCTCTCTCATCACTCCCTTTCTCCCATATTGTCTACTCCCATACTGAaccatccatctctttctctccatcactccctttcTCCCATCTTGTCTACTCCCATACTgaaccatccatctctctctccatcactccctttcTCCCATATTGTCTACTCCCATACTGAaccatccatctctttctctccatcactccctttcTCCTATCTTGTCTACTCCCATACTGAACCATCCATCTCTCTCatcactccctttctctcatcTTGTCTACTCCCATACTGAACCATCCATCTCTCTCATCACTCCCTTTCTCCCATCTTGTCTACTCCCATACTgaaccatccatctctctctcccctttcctcctcccgTTCTCCATCCCCACATCCACCTCTGAACTGCTGTTATCTGTGTCTCTACCTTCCTTCTGTCTTCAACCTTCCTTTCTTCTTTTTGGGGTTCACCCCCTTCAATTATTTCCCTGCTTCTCTCTTTTCACCCTCTTTCCCATcctcttccctctttccctccctttcctctctccatccgGCCTCTGTCGGCCTCTGGTAGAGGTCACCATGTGGGCCAACTACATTGTCCAGCCGGAGGAGGATGGCCGTATGGGGGTGGTAGGAGCAGGACCCCATGGGGGCCTGGCAGGGGTGAAGGGAGTTGGGCGTGCTACAAGGCGGACCCCTAGGATGAGTGACAACCAGGAGGGGAAGATCAAGCTGGCGTTCTTTGTGGCCATTGTGGGCGTGACCCTGACAGTGCTGGGGGTGGGAACAGAGTTCTGGGTGGAGCTGGCCACGCCCAAGACCTGGAGTAACAACCAGACGTGTCAGACAGCCCACTACGGCCTGTGGAAGGGGTGTACCCGCACCCTGTGGGTGGATGACATCAaccccgagagagagagctgtggccCCGCCGACCTGCCCGGAGAATCGAACTGCACTTACTTCAAATTCTTCACCAATGGAGACAACGCAGTCATATTTATGAAGACAACCCACAAGAACCTGAACATAGCGGCTGCTATCCTAGCAATGATAGCTCTGTCTATGATGGTGATGGGAGCAATCTGTATCACCATGTCCCTCAGTAAAGGAGTGCCCTTCTTCCTCAAGCCCGCCTCCTTCTGCTTCATCCTATCAGgtcTACTGGTCCTGCTGTCTATACTGGTGTTTCACCAGTCAGTGTTGGCCCTGTTGTCATCTGACCACTCCATACCGCTCCACCACGAGCTCTCCTGGTCCGTGGCCTGTGTGGGCTTCGCTGGGGCCATCCTCATCATGGGGGGGATCCTTTTCCTGATCCTCTCCCTCCCCTATAGCCCATGGGAAAAATGTCTGCCTCAACGCAACAGCAGCACTACCTAGCACATGGGAGGCCCAAAAGCTGTGGGAAAAAAATGGAGTTTTATATCAGGATCGCAAtcaaactccagtcctcgagggaaGCACTGTCTACTGGCTTTAGTTGTCAGGTATAAATCAGACACTGATCAGAACAACTAAAACCAGTAGACACTGATGCCACCCAGGAGTTGAGTTGGAGACCCCTGTTTATATTATCAGTGATATTGTCAAACTAGACTGAAAGACTGACTAACTTGTAGGTCGACACATTGTTTACTTAATGCAATAACAATGATGCTCACTAACTGTGCCTTGAACTCTACAAGCCTGCCCTAAAGCCTGCGACCTTACCAGAAAACACTACGTAGACCACAACTTCTCCACGTTTTGGCATCATGACCAACCTATAGCTTTTAGAAGTTTCTGATGACCTACCAAAGAACAAGCAATGTTTCTAAGCAGAACCCAGTCTTTACCAGGGGGGTAATGCTGGgttaaacaaaaccaaagcatggattgatGTCTTAACTTGTCCATTGACTGCtaacagggtaaggaaaccaatatgtcatttAGTTATTGAACTAGTTCTTTAAACACAACGCCAACCACACTGTAGTTGTAGATAAAGACCCAGCAGTGGGGTGCAGCATCCTGTCTGTACTATGAACTATGTACTAACCATTACTTATTGATAATGTTACTTAGCCAATTAAATGGTAACAGTGTAACCATGGTAACATGTAGGTCACTACCGTTGCTAAGGGAGGAGATGCTATATTGTTTCCAGGAAGTGGCATAGCCATCCCTGCAACATGAAACGCCTTGCAGGTTGTCACTATTAATCTATTATGAATGATTATGGCGTCTTACACTTAATACCTAGAAATAATATATTCTCTATTTATTATCTACACATTGTCCACATGAATGAATGTTGTTTTTACGTAAGAATGTGTGAATGATTTAATGTATGTATGGAAGATAAAGATTTATATTTGAGAGTGTATTGTATAGACTCACTTTACAAGCACAGCTCTGTATATAAAATATgtgtttgtattttatttataccTGCACACTGTAGCCTTTTGTTCAAGCTTAGGGgggtgtttttagtttttagctTATTCAAACCCTTTTTTCATCATGTGTTTTATTTGTCTTAATAAAGCCCACCTTGTCTTTCTCTACCTACATGTTTGTTTGGGGAAATGCACATTGTGCCTAAATGGTCCTATGATCATATGTATGTCTCACTGGGTTTGCTTTTGAAATAAATAGATTTGACATAAGAAA
>TU139386
ATAGCGGCTGCTATCCTAGCAATGATAGCTCTGTCTATGATGGTGATGGGAGCAATCTGTATCACCATGTCCCTCAGTAAAGGAGTGCCCTTCTTCCTCAAGCCCGCCTCCTTCTGCTTCATCCTATCAGgtcTACTGGTCCTGCTGTCTATACTGGTGTTTCACCAGTCAGTGTTGGCCCTGTTGTCATCTGACCACTCCATACCGCTCCACCACGAGCTCTCCTGGTCCGTGGCCTGTGTGGGCTTCGCTGGGGCCATCCTCATCATGGGGGGGATCCTTTTCCTGATCCTCTCCCTCCCCTATAGCCCATGGGAAAAATGTCTGCCTCAACGCAACAGCAGCACTACCTAGCACATGGGAGGCCCAAAAGCTGTGGGAAAAAAATGGAGTTTTATATCAGGATCGCAAtcaaactccagtcctcgagggaaGCACTGTCTACTGGCTTTAGTTGTCAGGTATAAATCAGACACTGATCAGAACAACTAAAACCAGTAGACACTGATGCCACCCAGGAGTTGAGTTGGAGACCCCTGTTTATATTATCAGTGATATTGTCAAACTAGACTGAAAGACTGACTAACTTGTAGGTCGACACATTGTTTACTTAATGCAATAACAATGATGCTCACTAACTGTGCCTTGAACTCTACAAGCCTGCCCTAAAGCCTGCGACCTTACCAGAAAACACTACGTAGACCACAACTTCTCCACGTTTTGGCATCATGACCAACCTATAGCTTTTAGAAGTTTCTGATGACCTACCAAAGAACAAGCAATGTTTCTAAGCAGAACCCAGTCTTTACCAGGGGGGTAATGCTGGgttaaacaaaaccaaagcatggattgatGTCTTAACTTGTCCATTGACTGCtaacagggtaaggaaaccaatatgtcatttAGTTATTGAACTAGTTCTTTAAACACAACGCCAACCACACTGTAGTTGTAGATAAAGACCCAGCAGTGGGGTGCAGCATCCTGTCTGTACTATGAACTATGTACTAACCATTACTTATTGATAATGTTACTTAGCCAATTAAATGGTAACAGTGTAACCATGGTAACATGTAGGTCACTACCGTTGCTAAGGGAGGAGATGCTATATTGTTTCCAGGAAGTGGCATAGCCATCCCTGCAACATGAAACGCCTTGCAGGTTGTCACTATTAATCTATTATGAATGATTATGGCGTCTTACACTTAATACCTAGAAATAATATATTCTCTATTTATTATCTACACATTGTCCACATGAATGAATGTTGTTTTTACGTAAGAATGTGTGAATGATTTAATGTATGTATGGAAGATAAAGATTTATATTTGAGAGTGTATTGTATAGACTCACTTTACAAGCACAGCTCTGTATATAAAATATgtgtttgtattttatttataccTGCACACTGTAGCCTTTTGTTCAAGCTTAGGGgggtgtttttagtttttagctTATTCAAACCCTTTTTTCATCATGTGTTTTATTTGTCTTAATAAAGCCCACCTTGTCTTTCTCTACCTACATGTTTGTTTGGGGAAATGCACATTGTGCCTAAATGGTCCTATGATCATATGTATGTCTCACTGGGTTTGCTTTTGAAATAAATAGATTTGA
>TU139389
ATAGCGGCTGCTATCCTAGCAATGATAGCTCTGTCTATGATGGTGATGGGAGCAATCTGTATCACCATGTCCCTCAGTAAAGGAGTGCCCTTCTTCCTCAAGCCCGCCTCCTTCTGCTTCATCCTATCAGgtcTACTGGTCCTGCTGTCTATACTGGTGTTTCACCAGTCAGTGTTGGCCCTGTTGTCATCTGACCACTCCATACCGCTCCACCACGAGCTCTCCTGGTCCGTGGCCTGTGTGGGCTTCGCTGGGGCCATCCTCATCATGGGGGGGATCCTTTTCCTGATCCTCTCCCTCCCCTATAGCCC
>TU139388
ATAGCGGCTGCTATCCTAGCAATGATAGCTCTGTCTATGATGGTGATGGGAGCAATCTGTATCACCATGTCCCTCAGTAAAGGAGTGCCCTTCTTCCTCAAGCCCGCCTCCTTCTGCTTCATCCTATCAGgtcTACTGGTCCTGCTGTCTATACTGGTGTTTCACCAGTCAGTGTTGGCCCTGTTGTCATCTGACCACTCCATACCGCTCCACCACGAGCTCTCCTGGTCCGTGGCCTGTGTGGG
>TU139390
cctctccaacacTCCCAACTTTCTCCCCTCTATTAAATTCCAAGCTTCTTTGAATCTGAAGTGAACAACATATTCCAAACAGGTGTTCCAGTATAATCAGACGCCATCCTTCCTCATCacccagtcctctcctcctccacctttctCTCATCACTCCCTTTCTCCCATCTTGTCTACTCCCATACTgaaccatccatctctctctccatcactccctttcTCCCATATTGTCTACTCCCATACTGAaccatccatctctttctctccatcactccctttcTCCTATCTTGTCTACTCCCATACTGAACCATCCATCTCTCTCATCACTCCCTTTCTCCCATATTGTCTACTCCCATACTGAaccatccatctctttctctccatcactccctttcTCCCATCTTGTCTACTCCCATACTgaaccatccatctctctctccatcactccctttcTCCCATATTGTCTACTCCCATACTGAaccatccatctctttctctccatcactccctttcTCCTATCTTGTCTACTCCCATACTGAACCATCCATCTCTCTCatcactccctttctctcatcTTGTCTACTCCCATACTGAACCATCCATCTCTCTCATCACTCCCTTTCTCCCATCTTGTCTACTCCCATACTgaaccatccatctctctctcccctttcctcctcccgTTCTCCATCCCCACATCCACCTCTGAACTGCTGTTATCTGTGTCTCTACCTTCCTTCTGTCTTCAACCTTCCTTTCTTCTTTTTGGGGTTCACCCCCTTCAATTATTTCCCTGCTTCTCTCTTTTCACCCTCTTTCCCATc
>TU139391
cctctccaacacTCCCAACTTTCTCCCCTCTATTAAATTCCAAGCTTCTTTGAATCTGAAGTGAACAACATATTCCAAACAGGTGTTCCAGTATAATCAGACGCCATCCTTCCTCATCacccagtcctctcctcctccacctttctCTCATCACTCCCTTTCTCCCATCTTGTCTACTCCCATACTgaaccatccatctctctctccccatcactccctttcTCCCATCTTGTCTACTCCCATACTgaaccatccatctctctctccatcactccctttcTCCCATATTGTCTACTCCCATACTGAaccatccatctctttctctccatcactccctttcTCCTATCTTGTCTACTCCCATACTGAACCATCCATCTCTCTCatcactccctttctctcatcTTGTCTACTCCCATACTGAACCATCCATCTCTCTCATCACTCCCTTTCTCCCATCTTGTCTACTCCCATACTgaaccatccatctctctctcccctttcctcctcccgTTCTCCATCCCCACATCCACCTCTGAACTGCTGTTATCTGTGTCTCTACCTTCCTTCTGTCTTCAACCTTCCTTTCTTCTTTTTGGGGTTCACCCCCTTCAATTATTTCCCTGCTTCTCTCTTTTCACCCTCTTTCCCATc

Function

NR:

description
PREDICTED: voltage-dependent calcium channel gamma-6 subunit

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940896.1 False 3218 mRNA 0.46 5 19484328 19494911
XM_036940887.1 False 3017 mRNA 0.46 5 19484328 19499142
TU139386 False 1623 TUCP 0.42 2 19484337 19488232
TU139389 False 311 TUCP 0.55 2 19485649 19488232
TU139388 False 245 lncRNA 0.53 2 19485715 19488232
TU139390 False 824 lncRNA 0.44 2 19493355 19499097
TU139391 True 651 lncRNA 0.47 3 19493355 19499097

Neighbor

gene id symbol gene type direction distance location
LOC110508916 LOC106605783 coding downstream 406375 19062094 ~ 19077953 (-)
josd2 josd2 coding downstream 726532 18755291 ~ 18757796 (-)
LOC110536927 LOC106577129 coding downstream 775697 18695833 ~ 18708631 (-)
LOC110536908 LOC106605765 coding downstream 790508 18688948 ~ 18693820 (-)
grwd1 grwd1 coding downstream 811918 18662604 ~ 18672410 (-)
u2af2a u2af2 coding upstream 7526 19506668 ~ 19513981 (-)
LOC110534365 LOC106576897 coding upstream 15137 19514279 ~ 19524832 (-)
LOC110537080 LOC106576890 coding upstream 28853 19527995 ~ 19548154 (-)
LOC110537104 LOC106605828 coding upstream 55776 19554918 ~ 19556242 (-)
LOC110537188 LOC106605820 coding upstream 83905 19583047 ~ 19585670 (-)
G120733 LOC106576929 non-coding downstream 997 19480389 ~ 19483331 (-)
G120719 LOC106576929 non-coding downstream 14810 19469003 ~ 19469518 (-)
G120693 NA non-coding downstream 53428 19423666 ~ 19430900 (-)
G120687 NA non-coding downstream 74461 19407957 ~ 19409867 (-)
G120683 NA non-coding downstream 78617 19399408 ~ 19405711 (-)
G120745 NA non-coding upstream 20503 19519645 ~ 19574747 (-)
G120786 NA non-coding upstream 119471 19618613 ~ 19619612 (-)
G120801 NA non-coding upstream 161749 19660891 ~ 19750081 (-)
G120772 NA non-coding upstream 183147 19682289 ~ 19683468 (-)
G119663 NA other downstream 435298 19048307 ~ 19049030 (-)
G119512 LOC105019016 other downstream 682941 18799500 ~ 18801387 (-)
LOC110534340 LOC106605761 other downstream 837665 18627912 ~ 18646884 (-)
LOC110536756 ndufa3 other downstream 941831 18541050 ~ 18543176 (-)
G119087 LOC106605728 other downstream 1007575 18476454 ~ 18476753 (-)
LOC118944062 LOC106575151 other upstream 194547 19692971 ~ 19695564 (-)
LOC110537275 grl1 other upstream 424956 19924063 ~ 19928533 (-)
G121046 NA other upstream 711926 20211068 ~ 20212367 (-)
LOC110509624 ret1 other upstream 963540 20462682 ~ 20465854 (-)
G121188 NA other upstream 999754 20498896 ~ 20500587 (-)
G120736 NA non-coding upstream 1052 19489284 ~ 19490248 (-)
G120738 NA non-coding upstream 3839 19492071 ~ 19492342 (-)

Expression


Co-expression Network