Gene
RNA
| Item | Value |
|---|---|
| gene id | cacng6b |
| gene name | LOC106606119 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 19484328 ~ 19499142 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: voltage-dependent calcium channel gamma-6 subunit |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036940896.1 | False | 3218 | mRNA | 0.46 | 5 | 19484328 | 19494911 |
| XM_036940887.1 | False | 3017 | mRNA | 0.46 | 5 | 19484328 | 19499142 |
| TU139386 | False | 1623 | TUCP | 0.42 | 2 | 19484337 | 19488232 |
| TU139389 | False | 311 | TUCP | 0.55 | 2 | 19485649 | 19488232 |
| TU139388 | False | 245 | lncRNA | 0.53 | 2 | 19485715 | 19488232 |
| TU139390 | False | 824 | lncRNA | 0.44 | 2 | 19493355 | 19499097 |
| TU139391 | True | 651 | lncRNA | 0.47 | 3 | 19493355 | 19499097 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110508916 | LOC106605783 | coding | downstream | 406375 | 19062094 ~ 19077953 (-) |
| josd2 | josd2 | coding | downstream | 726532 | 18755291 ~ 18757796 (-) |
| LOC110536927 | LOC106577129 | coding | downstream | 775697 | 18695833 ~ 18708631 (-) |
| LOC110536908 | LOC106605765 | coding | downstream | 790508 | 18688948 ~ 18693820 (-) |
| grwd1 | grwd1 | coding | downstream | 811918 | 18662604 ~ 18672410 (-) |
| u2af2a | u2af2 | coding | upstream | 7526 | 19506668 ~ 19513981 (-) |
| LOC110534365 | LOC106576897 | coding | upstream | 15137 | 19514279 ~ 19524832 (-) |
| LOC110537080 | LOC106576890 | coding | upstream | 28853 | 19527995 ~ 19548154 (-) |
| LOC110537104 | LOC106605828 | coding | upstream | 55776 | 19554918 ~ 19556242 (-) |
| LOC110537188 | LOC106605820 | coding | upstream | 83905 | 19583047 ~ 19585670 (-) |
| G120733 | LOC106576929 | non-coding | downstream | 997 | 19480389 ~ 19483331 (-) |
| G120719 | LOC106576929 | non-coding | downstream | 14810 | 19469003 ~ 19469518 (-) |
| G120693 | NA | non-coding | downstream | 53428 | 19423666 ~ 19430900 (-) |
| G120687 | NA | non-coding | downstream | 74461 | 19407957 ~ 19409867 (-) |
| G120683 | NA | non-coding | downstream | 78617 | 19399408 ~ 19405711 (-) |
| G120745 | NA | non-coding | upstream | 20503 | 19519645 ~ 19574747 (-) |
| G120786 | NA | non-coding | upstream | 119471 | 19618613 ~ 19619612 (-) |
| G120801 | NA | non-coding | upstream | 161749 | 19660891 ~ 19750081 (-) |
| G120772 | NA | non-coding | upstream | 183147 | 19682289 ~ 19683468 (-) |
| G119663 | NA | other | downstream | 435298 | 19048307 ~ 19049030 (-) |
| G119512 | LOC105019016 | other | downstream | 682941 | 18799500 ~ 18801387 (-) |
| LOC110534340 | LOC106605761 | other | downstream | 837665 | 18627912 ~ 18646884 (-) |
| LOC110536756 | ndufa3 | other | downstream | 941831 | 18541050 ~ 18543176 (-) |
| G119087 | LOC106605728 | other | downstream | 1007575 | 18476454 ~ 18476753 (-) |
| LOC118944062 | LOC106575151 | other | upstream | 194547 | 19692971 ~ 19695564 (-) |
| LOC110537275 | grl1 | other | upstream | 424956 | 19924063 ~ 19928533 (-) |
| G121046 | NA | other | upstream | 711926 | 20211068 ~ 20212367 (-) |
| LOC110509624 | ret1 | other | upstream | 963540 | 20462682 ~ 20465854 (-) |
| G121188 | NA | other | upstream | 999754 | 20498896 ~ 20500587 (-) |
| G120736 | NA | non-coding | upstream | 1052 | 19489284 ~ 19490248 (-) |
| G120738 | NA | non-coding | upstream | 3839 | 19492071 ~ 19492342 (-) |
