LOC110537095 (LOC106576906)


Basic Information

Item Value
gene id LOC110537095
gene name LOC106576906
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19526163 ~ 19528660 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622866.2
CACTCATGAGTCACTGTTTTTACCTGCCAGTGAAGAACCGGAAGGATACAGTTTGAGTGGATTCTACTTACATTTTTAAGAGATAAATATTGAAAAGATACTAATCAAAACGCATTTGCACTTGTGATGAGGTGAGTGACCATGGCGCAGCACTATGATGGTCTGTCCCACTGTAAACTGGCCCTGGTGTTTGCCATATTGATGGACCTGCTAGGTGTCTCTGCTCTTCTGGTGGGGGTTTTCGCCCCATTAGAGATTAAGGGACAGGACTTTGGGGACCTGTTGGTGTACTCTGGGGCTCTACTGATGCTCATGTCCCTGGGAGGATGGGTCATGTGGTACAGCGGGAACCTTGAGGGCCTGACCTCCAGGAAGGAGCTAGGGGGAACCATGGGTGCCATGGACCGGCTGGCCCGCTCCCTCAGCCGCAGGATACGACTCCCCAGGAGCCACAGCAGCCCCTCATGATGCTTCATGGTCAGGCGTAGGAGAAGGGTGTGGTTGTAGGGGAGGGTCCTCACTGTCTCCATTAGACTATTGGCCCCTGATAGTCAAACTGCCTGGGGGTCTGGGAGCAGTATTGTTGGCATTGAGGGAGTGCTATTAAATGAACCATGCTATGGCCCGTGATGTGAACAGGcaaaagaggggttgggaggaGCACCCTTCTCAAACCTAACAGTAATCTGCGCCGCTCGGTCATGTTGTCATCAAGGCAGCATATGTTCACATTTTCAAACTAGTTTTCAATAGGAAGGCAGATAATGATTGCTTTTGATAAAAATTATTTTTGGTATGTGTAAACACAGAATCCTATTCATTACTCCATGCCCGGTTCCAAAACGAATGTAATCAACGCCAACCCATTTCACCCGGGACAGGAATAAGATTCCGTTtttaagatatatatatttttatagaaCTCCCTCATTCTTTAACCCAAGTTCCACCGCCTCCACAGTGGAAGAGACTTACATACTGATAGTTCACTAGTGTCAATTACAAGATGGAAAAACTGTTGGTCATTGCATTTTATTGTGACTTAACCTTTGCTGAAACACCTGCGGTAGATAACAGAATTGTACACTGTCTGAATAGGATTTTAAACGATCAAGCATGGAGGCTATTCATAGATCACTTGGTTGGTTTGTTTAGGCTTGAATCTGTACAGAATTGATCTTTATATTCATAATAATTAATGTGTTGTGGTTTTCTTTGAATCGTAATAGGGTTTTTGTATTAAATTATAAAATTGTattaaaactataaaat
>TU138235
GAAGAACCGGAAGGATACAGTTTGAGTGGATTCTACTTACATTTTTAAGAGATAAATATTGAAAAGATACTAATCAAAACGCATTTGCACTTGTGATGAGGTGAGTGACCATGGCGCAGCACTATGATGGTCTGTCCCACTGTAAACTGGCCCTGGTGTTTGCCATATTGATGGACCTGCTAGGTGTCTCTGCTCTTCTGGTGGGGGTTTTCGCCCCATTAGAGATTAAGGGACAGGACTTTGGGGACCTGTTGGTGTACTCTGGGGCTCTACTGATGCTCATGTCCCTGGGAGGATGGGTCATGTGGTACAGCGGGAACCTTGAGGGCCTGACCTCCAGGAAGGAGCTAGGGGGAACCATGGGTGCCATGGACCGGCTGGCCCGCTCCCTCAGCCGCAGGATACGACTCCCCAGGAGCCACAGCAGCCCCTCATGATGCTTCATGGTCAGGCGTAGGAGAAGGGTGTGGTTGTAGGGGAGGGTCCTCACTGTCTCCATTAGACTATTGGCCCCTGATAGTCAAACTGCCTGGGGGTCTGGGAGCAGTATTGTTGGCATTGAGGGAGTGCTATTAAATGAACCATGCTATGGCCCGTGATGTGAACAGGcaaaagaggggttgggaggaGCACCCTTCTCAAACCTAACAGTAATCTGCGCCGCTCGGTCATGTTGTCATCAAGGCAGCATATGTTCACATTTTCAAACTAGTTTTCAATAGGAAGGCAGATAATGATTGCTTTTGATAAAAATTATTTTTGGTATGTGTAAACACAGAATCCTATTCATTACTCCATGCCCGGTTCCAAAACGAATGTAATCAACGCCAACCCATTTCACCCGGGACAGGAATAAGATTCCGTTtttaagatatatatatttttatagaaCTCCCTCATTCTTTAACCCAAGTTCCACCGCCTCCACAGTGGAAGAGACTTACATACTGATAGTTCACTAGTGTCAATTACAAGATGGAAAAACTGTTGGTCATTGCATTTTATTGTGACTTAACCTTTGCTGAAACACCTGCGGTAGATAACAGAATTGTACACTGTCTGAATAGGATTTTAAACGATCAAGCATGGAGGCTATTCATAGATCACTTGGTTGGTTTGTTTAGGCTTGAATCTGTACAGAATTGATCTTTATATTCATAATAATTAATGTGTTGTGGTTTTCTTTGAATCGTAA
>TU138236
GAAGAACCGGAAGGATACAGTTTGAGTGGATTCTACTTACATTTTTAAGAGATAAATATTGAAAAGATACTAATCAAAACGCATTTGCACTTGTGATGAGGTGAGTGACCATGGCGCAGCACTATGATGGTCTGTCCCACTGTAAACTGGCCCTGGTGTTTGCCATATTGATGGACCTGCTAGGTGTCTCTGCTCTTCTGGTGGGGGTTTTCGCCCCATTAGAGATTAAGGGACAGGACTTTGGGGACCTGTTGGTGTACTCTGGGGCTCTACTGATGCTCATGTCCCTGGGAGGATGGGTCATGTGGTACAGCGGGAACCTTGAGGGCCTGACCTCCAGGAAGGAGCTAGGGGGAACCATGGGTGCCATGGACCGGCTGGCCCGCTCCCTCAGCCGCAGGATACGACTCCCCAGGAGCCACAGCAGCCCCTCATGATGCTTCATGGTCAGGCGTAGGAGAAGGGTGTGGTTGTAGGGGAGGGTCCTCACTGTCTCCATTAGACTATTGGCCCCTGATAGTCAAACTGCCTGGGGGTCTGGGAGCAGTATTGTTGGCATTGAGGGAGTGCTATTAAATGAACCATGCTATGGCCCGTGATGTGAACAGGcaaaagaggggttgggaggaGCACCCTTCTCAAACCTAACAGTAATCTGCGCCGCTCGGTCATGTTGTCATCAAGGCAGCATATGTTCACATTTTCAAACTAGTTTTCAATAGGAAGGCAGATAATGATTGCTTTTGATAAAAATTATTTTTGGTATGTGTAAACACAGAATCCTATTCATTACTCCATGCCCGGTTCCAAAACGAATGTAATCAACGCCAACCCATTTCACCCGGGACAGGAATAAGATTCCGTTtttaagatatatatatttttatagaaCTCCCTCATTCTTTAACCCAAGTTCCACCGCCTCCACAGTGGAAGAGACTTACATACTGATAGTTCACTAGTGTCAATTACAAGATGGAAAAACTGTTGGTCATTGCATTTTATTGTGACTTAACCTTTGCTGAAACACCTGCGGTAGATAACAGAATTGTACACTGTCTGAATAGGATTTTAAACGATCAAGCATGGAGGCTATTCATAGATCACTTGGTTGGTTTGTTTAGGCTTGAATCTGTACAGAATTGATCTTTATATTCATAATAATTAATGTGTTGTGGTTTTCTTTGAATCGTAATAGGGTTTTTGTATTAAATTATAAAATTGTattaaaactataaaataaccTACCATAGGGCATTTGTGAAGATTTGGGGTGTAAAGTATTACATTATATTGACTTGAAAACAGATATTTTATGAAAGTATTTACAAAAGTTTATTTTTCATAGATTATCTTGCATAGAGTCGTTATGATGAACATTTTCAGACAtgagtcacacacaaacactctttcAAATACTGCATAAAATACTTTAAGTATCTTTTGAGACTTCCACTCCCTTATCGCTCTGCAAATGAAAACttagaacaaaacaaaaaaattaaaTGTGTTTCACAAGGTCATGACGAGCAGACATAAGATAATTTCTCTGGGAGAAATCCTAGCAGTTTTTTTTTTCTAGAATCTTCAAGAGGATTAGCCAATAATTTCAAaagatttgacacacacacacacagagagagagatgataataAAGTGCAATTACGCTGTAGATTTACCCAGCATGGGAACTGAAGGCCAGGGTCTTATGCAACAATAGTTACTAGGAACCCAGCAGCTTCAACACTACATCTCAGTATCAATGTAAACGAGTTTGATCAAACGTCATGGAATGATGATATGAATCTGAGTGTGCATGTTTTGTGGTAAAAACAAACCCTAACCATTCTTAACTAACCAAACAAAAGTCAAGACTCTTACTGTAAAATACTTTGCTACAGTGATgtgccacccggcacagccagaagaggactggccaccccacatagcctggttcctctctaagtttcttcctagatttt

Function

NR:

description
transmembrane protein 238

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622866.2 False 1272 mRNA 0.44 2 19526163 19527919
TU138235 False 1195 TUCP 0.45 2 19526194 19527873
TU138236 True 1982 TUCP 0.41 2 19526194 19528660

Neighbor

gene id symbol gene type direction distance location
LOC110537022 LOC106576929 coding upstream 44780 19444131 ~ 19481383 (+)
LOC110534362 LOC106575226 coding upstream 92532 19392737 ~ 19433631 (+)
LOC110512786 LOC105019084 coding upstream 178863 19307576 ~ 19347300 (+)
LOC110503718 LOC102193556 coding upstream 267089 19131905 ~ 19259074 (+)
LOC110520830 LOC106605779 coding upstream 525953 18994838 ~ 19000210 (+)
LOC110537107 LOC106605819 coding downstream 37960 19565879 ~ 19579511 (+)
LOC110537165 LOC106605824 coding downstream 69594 19597513 ~ 19599416 (+)
LOC110537142 LOC106576877 coding downstream 109515 19637434 ~ 19645326 (+)
LOC110537226 LOC106575133 coding downstream 148737 19676656 ~ 19683059 (+)
LOC118944064 NA coding downstream 170572 19698491 ~ 19699519 (+)
G119866 NA non-coding upstream 6486 19518941 ~ 19519677 (+)
G119795 NA non-coding upstream 19663 19504866 ~ 19506500 (+)
G119856 LOC106606119 non-coding upstream 32039 19492925 ~ 19494124 (+)
G119855 NA non-coding upstream 33524 19492421 ~ 19492639 (+)
G119844 NA non-coding upstream 62247 19463328 ~ 19463916 (+)
G119883 NA non-coding downstream 24796 19552715 ~ 19562850 (+)
G119909 NA non-coding downstream 52902 19580821 ~ 19582374 (+)
G119916 LOC106605822 non-coding downstream 63623 19591542 ~ 19595167 (+)
G119899 NA non-coding downstream 132988 19660907 ~ 19750224 (+)
G119893 NA non-coding downstream 155874 19683793 ~ 19685529 (+)
G119794 u2af2 other upstream 18825 19506651 ~ 19507338 (+)
G119245 stl2 other upstream 564698 18934673 ~ 18992769 (+)
G119160 NA other upstream 853843 18670513 ~ 18672320 (+)
G119153 LOC106605761 other upstream 890122 18633839 ~ 18636041 (+)
G119952 nat14 other downstream 174180 19702099 ~ 19703788 (+)
LOC110537243 LOC106576860 other downstream 240351 19768270 ~ 19778335 (+)
G120059 grl1 other downstream 396153 19924072 ~ 19928477 (+)
casp2 LOC106605831 other downstream 490780 20018602 ~ 20030933 (+)

Expression


Co-expression Network