LOC110537104 (LOC106605828)


Basic Information

Item Value
gene id LOC110537104
gene name LOC106605828
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19554918 ~ 19556242 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934601.1
CCCATTTCTTGAGAATCTCCCCACAGAGAAAGTCAACACAGTTTGGCCTTTACTGAAGATGACAAAACCCATACATTTGGGCTCTTCAGTAATCGAATGATTTTCATGAATGTAAAGGACGTCCACAGACCAACATTTTACACATCAACCAATGTGCTCTTTGGTCCAATAATGATAGGAAGCCACTGAGCACGATCATATCATTCAATAGGAAAAACTGCAGACGAGATGAACACCTCCATCCATGTGCTTTAACTGACTACTTTGTGGCACAGGACTGGACACAAGACTGGTAACAGGACACAAAGCCAAGAGAGCGACAAAGCAAAGAGAAACATACAAAAGGAGTAACAGAGATATTTACAGAAGCTACTAAAGGAGTACGAAAGAAACATCTAAAAGATAACAACAAAGATGGAGACCCTGGATCCCTCCGCTCTCCCAGGTGCCACCACCGCTGTGACCTATGACTCCAAATCAGAGATGGTGACCCTACCAGGAGGGGTTGTCTCTGTGGCAGGCATCACTGTGATAACCGGGGGCGCTGAACTGTCCTGTGGCTCTTGCATGCTAGCCTTTGGTGTTTGGGGCACTCTAATTGGCCTAAGCGTGGTTGCCCTGGGTATCTGGGACCAATCAGTGCAGGTCGGGGGTCAGACCTCGCACCTCCTGGGGCTGGGATTGGTGGTTCTGGCTATCAGTTTTGGGGTGGTGGGCAGTGTGGTGGGCTTTCGCTTCCTgacgaaggggaggagagagataacgagggaggagagggaggatgggaagGTGGTGctcatagaggagagagggaggagtgttaAAAAAACTGTGACTGTGTAAAAAAaaagaggggatgagagaaaAACGTTTTCAAGTTGTGATTATTGCACATAGTGGTCTGGCTGTGTTGCACACTGTCACACTTTAGTATTAGTGGAAGAACAGTTATGTTTTATATGAATGTTATGAATTTGTTTCACACCATAAAAATGTACTTTGGTTGAGTAACTTTCAGATAAAATATTTGACCAT
>XM_036934602.1
GCTCCCATTTCTTGAGAATCTCCCCACAGAGAAAGTCAACACAGTTTGGCCTTTACTGAAGATGACAAAACCCATACATTTGGGCTCTTCAGTAATCGAATGATTTTCATGAATGTAAAGGACGTCCACAGACCAACATTTTACACATCAACCAATGTGCTCTTTGGTCCAATAATGATAGGAAGCCACTGAGGACTGGACACAAGACTGGTAACAGGACACAAAGCCAAGAGAGCGACAAAGCAAAGAGAAACATACAAAAGGAGTAACAGAGATATTTACAGAAGCTACTAAAGGAGTACGAAAGAAACATCTAAAAGATAACAACAAAGATGGAGACCCTGGATCCCTCCGCTCTCCCAGGTGCCACCACCGCTGTGACCTATGACTCCAAATCAGAGATGGTGACCCTACCAGGAGGGGTTGTCTCTGTGGCAGGCATCACTGTGATAACCGGGGGCGCTGAACTGTCCTGTGGCTCTTGCATGCTAGCCTTTGGTGTTTGGGGCACTCTAATTGGCCTAAGCGTGGTTGCCCTGGGTATCTGGGACCAATCAGTGCAGGTCGGGGGTCAGACCTCGCACCTCCTGGGGCTGGGATTGGTGGTTCTGGCTATCAGTTTTGGGGTGGTGGGCAGTGTGGTGGGCTTTCGCTTCCTgacgaaggggaggagagagataacgagggaggagagggaggatgggaagGTGGTGctcatagaggagagagggaggagtgttaAAAAAACTGTGACTGTGTAAAAAAaaagaggggatgagagaaaAACGTTTTCAAGTTGTGATTATTGCACATAGTGGTCTGGCTGTGTTGCACACTGTCACACTTTAGTATTAGTGGAAGAACAGTTATGTTTTATATGAATGTTATGAATTTGTTTCACACCATAAAAATGTACTTTGGTTGAGTAACTTTCAGATAAAATATTTGACCAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934601.1 False 1035 mRNA 0.46 2 19554918 19556239
XM_036934602.1 True 953 mRNA 0.46 2 19554918 19556242

Neighbor

gene id symbol gene type direction distance location
LOC110537080 LOC106576890 coding downstream 6764 19527995 ~ 19548154 (-)
LOC110534365 LOC106576897 coding downstream 30086 19514279 ~ 19524832 (-)
u2af2a u2af2 coding downstream 40937 19506668 ~ 19513981 (-)
cacng6b LOC106606119 coding downstream 55776 19484328 ~ 19499142 (-)
LOC110508916 LOC106605783 coding downstream 476965 19062094 ~ 19077953 (-)
LOC110537188 LOC106605820 coding upstream 26805 19583047 ~ 19585670 (-)
LOC118936409 LOC106576885 coding upstream 35297 19591539 ~ 19595179 (-)
LOC110537113 epn1 coding upstream 45656 19601898 ~ 19625084 (-)
LOC110537155 necp1 coding upstream 127593 19683835 ~ 19692640 (-)
LOC118944062 LOC106575151 coding upstream 136874 19692971 ~ 19695564 (-)
G120738 NA non-coding downstream 62576 19492071 ~ 19492342 (-)
G120736 NA non-coding downstream 64670 19489284 ~ 19490248 (-)
G120733 LOC106576929 non-coding downstream 71587 19480389 ~ 19483331 (-)
G120786 NA non-coding upstream 62371 19618613 ~ 19619612 (-)
G120801 NA non-coding upstream 104649 19660891 ~ 19750081 (-)
G120772 NA non-coding upstream 126047 19682289 ~ 19683468 (-)
LOC110534366 LOC106605829 non-coding upstream 158091 19706293 ~ 19715203 (-)
G119663 NA other downstream 505888 19048307 ~ 19049030 (-)
G119512 LOC105019016 other downstream 753531 18799500 ~ 18801387 (-)
LOC110534340 LOC106605761 other downstream 908255 18627912 ~ 18646884 (-)
LOC110536756 ndufa3 other downstream 1012421 18541050 ~ 18543176 (-)
LOC110537275 grl1 other upstream 367856 19924063 ~ 19928533 (-)
G121046 NA other upstream 654826 20211068 ~ 20212367 (-)
LOC110509624 ret1 other upstream 906440 20462682 ~ 20465854 (-)
G121188 NA other upstream 942654 20498896 ~ 20500587 (-)

Expression


Co-expression Network