LOC110537142 (LOC106576877)


Basic Information

Item Value
gene id LOC110537142
gene name LOC106576877
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19637434 ~ 19645326 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941014.1
tgagagagtgtgtgttagggacagagagagggagggaggtaggaggggagagcaggagagagggaggagggggatagagagaggggaggagacagagagtgagtgaagTGGTGGTCtctcagggagagagacaaggTAAGTACCAAGGTCCCGAGGGATAGGAAGGTAGATATACCTCAGTGTCTGCTATAAAAACTACCAGCGCATGGACCTGCAGAGACAAAGTAACAATAACAGCCACTTGTGCTCCGATACAGATCTCCTAAAGAGTAGATCACCAGTGAAAGACAATAGTTAGGAACAGAACAGCAGCAGACCAACAGCAGACCTACAAAGGGTCAGGAAGTTGTTGAAGTCTATGTCGATGCTGACGAGGACCCAGACAAGCTGAACAGAGACAGACGTTCCCACTTGAGAAAACTCTACAATGACAGCTGCAGCTCAGGAACTGGACGAGCTATGTTTCCTCTCAGCCCAGTCCATGTCCACTCTGGAGACCTCCAACCACTTCCAGATGGTCAAGCTGCTGGGAGAGGGATCCTACGGCAAGGTCATGCTGGCCGTCCACAAGAAGAGAGgCACTCCCATGGCTCTGAAGTTCTTCCCCCGCCAGTCCACATCCCTCTTCTCTTTCCTGCGTGAATACAACCTCTCCCTTTCTTATtgcactcatccctctctcacccgGGCCCTGGGTATCTTCTTCTCCACCCCCTGCTACTATGTCTTCGCCCAGCAGGCTGGTCTCTATGGAGACCTCTACAGTGTCATCGTGTCAGAGgtggGTGTAGATGAAGAGTGTGTCCAGAGGGTGATGTCTCAGCTGAGTGGTGCCGTCTCATACCTCCACTCCATGGGCTTCGTCCACCGGGACATCAAACCAGAGAACATCTTCCTGTGTGACCGTGCCTGTCGCTGGGTCAAACTGGGTGACTTCGGCCTGGCCCGCCCCACTGGCTGCACCGTCCGCGCCGTCTGGTACGACTCGCCCTTCTGCACGCCTGAGGTGGAGCAGGCCAAAGAATCCGAGAAagtgagggagcagagagaggaggatggagaggaggaggagaacatttGGATCACAGTGGAGACCACTATAGACAGCTGGGCCCTGGGCGTGCTGGTCTACTGCCTGCTGACGGGATGCTTTCCCTGGGAAGAGACAACCCACGATGACCCCGCCTACCGGAGGTACAAGGAGTGGTACGAccgcgagacggagagggaggaaaggagcgaGAGGCTGAGAGGGGAAAAGGAAGTAATTTGGTGCGAAGGTGAAAGTGAAAAGGACAATATCCTGAGCCTGGAGAAGAATCAGAAGTTGAACCCTATGGCCCCACAGTTTGAAGGCTTCAGCCCACTGGTGATGTCTCTTTTCAGGGAGCTGCTTAACCCACGGCCCAGTCTTCGAGGAGGCCCTGATGAGATCCTCAGCTACCTGGGTGGGCCCTGGttgattgagacagagagagaggagaagaggaaagcagaggaggtagagaaggaggccAGGAAAATAAGAGAGGCAGGAAcggtggaggaagggagggagagggagggaagaggggagagataaaGTGTTTCATACTAGACAGGTTCGAGAATTTTTAAGATGTACTGTACATTTTGGAAGACAATATTTGCTTTATAGAGGTTGATATTCTGAATATTTTTCTGAACATTTCTTACTCTGTATTGATAGAATTGAGACAACTGTATTTTGATATTGCTGTATGTTTTACCTTGTAATAGTTCTCTACAGTGTAATGCAACTTaatattatatgtgtgtgtgagcgtgcatgtGCCATACCTGCCTGTGTATGTGCGTGCTTGAACATGATCGTGAGTGTGCATGTGGGCTTAGGGGCAGCTAGCCTCTTAAGAGAATACATGAATTAGTTCTCCTTCAACACACAGGCAGTATTATAATGATCACTCTATGACACTTTATGTTGTAAAAATATCTGAATAAACCAGTTTGTATTTATA

Function

NR:

description
serine/threonine-protein kinase SBK2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941014.1 True 1997 mRNA 0.51 4 19637434 19645326

Neighbor

gene id symbol gene type direction distance location
LOC110537165 LOC106605824 coding upstream 38018 19597513 ~ 19599416 (+)
LOC110537107 LOC106605819 coding upstream 57923 19565879 ~ 19579511 (+)
LOC110537095 LOC106576906 coding upstream 109515 19526163 ~ 19528660 (+)
LOC110537022 LOC106576929 coding upstream 156051 19444131 ~ 19481383 (+)
LOC110534362 LOC106575226 coding upstream 203803 19392737 ~ 19433631 (+)
LOC110537226 LOC106575133 coding downstream 31330 19676656 ~ 19683059 (+)
LOC118944064 NA coding downstream 53165 19698491 ~ 19699519 (+)
LOC110537243 LOC106576860 coding downstream 130103 19768270 ~ 19778335 (+)
LOC110537251 LOC106605841 coding downstream 151068 19796394 ~ 19828604 (+)
LOC110537257 LOC106576842 coding downstream 188063 19833389 ~ 19892698 (+)
G119916 LOC106605822 non-coding upstream 42267 19591542 ~ 19595167 (+)
G119909 NA non-coding upstream 55060 19580821 ~ 19582374 (+)
G119883 NA non-coding upstream 74584 19552715 ~ 19562850 (+)
G119866 NA non-coding upstream 117757 19518941 ~ 19519677 (+)
G119795 NA non-coding upstream 130934 19504866 ~ 19506500 (+)
G119899 NA non-coding downstream 15581 19660907 ~ 19750224 (+)
G119893 NA non-coding downstream 38467 19683793 ~ 19685529 (+)
G119955 LOC106605829 non-coding downstream 65156 19710482 ~ 19713435 (+)
G119986 NA non-coding downstream 113132 19758458 ~ 19758725 (+)
G120018 NA non-coding downstream 174646 19819972 ~ 19821386 (+)
G119794 u2af2 other upstream 130096 19506651 ~ 19507338 (+)
LOC110503718 LOC102193556 other upstream 379940 19131905 ~ 19259074 (+)
G119245 stl2 other upstream 675969 18934673 ~ 18992769 (+)
G119160 NA other upstream 965114 18670513 ~ 18672320 (+)
G119952 nat14 other downstream 56773 19702099 ~ 19703788 (+)
G120059 grl1 other downstream 278746 19924072 ~ 19928477 (+)
casp2 LOC106605831 other downstream 373373 20018602 ~ 20030933 (+)

Expression


Co-expression Network