LOC110537226 (LOC106575133)


Basic Information

Item Value
gene id LOC110537226
gene name LOC106575133
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19676656 ~ 19683059 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941028.1
TAATGAGAGGGGAGGACAAGgggtggaggagaagaaggaggaggagatggagagagaaggaggggaaaggagagaggacaaAATATTCAAAACAAAGGACGCTTTTGGACGACAGGAAAAGTTCTCGTAAACATCCAGCTCTTACAAGGATGGGCAGTCTTCCAATCGCCCTGCTCCTCTGCGGTTTCCATGACTGTAGGGAAGAGACGTACCCCTGTACCAGGATGTACTCTGTCCACCGGCCCATCAAGAGATGCATCCACTCCCTCTGCCTTTACAGCCTCCCTCGTGTCTATGTGATCAACAAGGAGATATGTGTTAGAACTGTCTGCCAACAGGATGAGTACCTGAAGGCTGAACTCTGCAGGGAGCGGTCCGGCTGGCCCAAACGCTTCCAGAGGTCAACCACCAATAAGAAACGCTGTCACAATCGCCGCAGCAACCCCAAAACCTGGCAAAACAAGGCCTGATGGGCCCAAGATggaggagatggaaggaggggcggaggaggaaggagagaaagagagaaggaggaggaaggagtaggAGGGAGGACACCCTTGGAGACAGAACACTGGGTTGTCTCCATAAAAAGACCCCGAAACACCATAAATTCACCGCTCAACACCTGGTGCTAGCCTGTGCCTtaacacacaaccacaaccatgcacacatacacacacacacaatatatatatatatatatatatataaaacacagtccacGTGACTCCAGTTAAGAACAGTCTGAGTCATATTTCTCAGTTATTCTATTAGCCCTGTGTTTTATTAGAACTGTATGTGAATATCAGGGGAGAAATCACTCCCCACAGATTGGACCTGTGTTTTAATAGAACTGTCTGTGAATATCAGGGGAGAAATCACTCCCCACAGATTGGACCTGTGTTTTAATTGACACGGATCATGTTCTGTGCCGTTGCGGGCTGTATCATACTGTTCAGATGGAACGCTGTTGAGTTCCTGTAGTTGTGTACTGTAGAGACAGTCTGAGAACAAAGTATCCACTCTGTCATTGCTGACACCTTATTGTAAAGCACTCTATCACAATCCAATACCAAAGCAGTGCAATACTACAAAGCAGTGCAATACTACCCAATAAAATGTCATTCATT
>XM_036941018.1
AATGAGAGGGGAGGACAAGgggtggaggagaagaaggaggaggagatggagagagaaggaggggaaaggagagaggacaaAATATTCAAAACAAAGGACGCTTTTGGACGACAGGAAAAGTTCTCGTAAACATCCAGCTCTTACAAGGATGGGCAGTCTTCCAATCGCCCTGCTCCTCTGCGGTTTCCATGCCCTCACAGCTGTAGCCCAAGCCCCGCAGGCTGAGGCGGAACTCCACAGAGGTGACTGGAATGAAGAGGAGGctttggtgtctgtctctaccctaccGCCTGACTGTAGGGAAGAGACGTACCCCTGTACCAGGATGTACTCTGTCCACCGGCCCATCAAGAGATGCATCCACTCCCTCTGCCTTTACAGCCTCCCTCGTGTCTATGTGATCAACAAGGAGATATGTGTTAGAACTGTCTGCCAACAGGATGAGTACCTGAAGGCTGAACTCTGCAGGGAGCGGTCCGGCTGGCCCAAACGCTTCCAGAGGTCAACCACCAATAAGAAACGCTGTCACAATCGCCGCAGCAACCCCAAAACCTGGCAAAACAAGGCCTGATGGGCCCAAGATggaggagatggaaggaggggcggaggaggaaggagagaaagagagaaggaggaggaaggagtaggAGGGAGGACACCCTTGGAGACAGAACACTGGGTTGTCTCCATAAAAAGACCCCGAAACACCATAAATTCACCGCTCAACACCTGGTGCTAGCCTGTGCCTtaacacacaaccacaaccatgcacacatacacacacacacaatatatatatatatatatatatataaaacacagtccacGTGACTCCAGTTAAGAACAGTCTGAGTCATATTTCTCAGTTATTCTATTAGCCCTGTGTTTTATTAGAACTGTATGTGAATATCAGGGGAGAAATCACTCCCCACAGATTGGACCTGTGTTTTAATAGAACTGTCTGTGAATATCAGGGGAGAAATCACTCCCCACAGATTGGACCTGTGTTTTAATTGACACGGATCATGTTCTGTGCCGTTGCGGGCTGTATCATACTGTTCAGATGGAACGCTGTTGAGTTCCTGTAGTTGTGTACTGTAGAGACAGTCTGAGAACAAAGTATCCACTCTGTCATTGCTGACACCTTATTGTAAAGCACTCTATCACAATCCAATACCAAAGCAGTGCAATACTACAAAGCAGTGCAATACTACCCAATAAAATGTCATTCATT
>XM_036941027.1
AATGAGAGGGGAGGACAAGgggtggaggagaagaaggaggaggagatggagagagaaggaggggaaaggagagaggacaaAATATTCAAAACAAAGGACGCTTTTGGACGACAGGAAAAGTTCTCGTAAACATCCAGCTCTTACAAGGATGGGCAGTCTTCCAATCGCCCTGCTCCTCTGCGGTTTCCATGAGGCGGAACTCCACAGAGGTGACTGGAATGAAGAGGAGGctttggtgtctgtctctaccctaccGCCTGACTGTAGGGAAGAGACGTACCCCTGTACCAGGATGTACTCTGTCCACCGGCCCATCAAGAGATGCATCCACTCCCTCTGCCTTTACAGCCTCCCTCGTGTCTATGTGATCAACAAGGAGATATGTGTTAGAACTGTCTGCCAACAGGATGAGTACCTGAAGGCTGAACTCTGCAGGGAGCGGTCCGGCTGGCCCAAACGCTTCCAGAGGTCAACCACCAATAAGAAACGCTGTCACAATCGCCGCAGCAACCCCAAAACCTGGCAAAACAAGGCCTGATGGGCCCAAGATggaggagatggaaggaggggcggaggaggaaggagagaaagagagaaggaggaggaaggagtaggAGGGAGGACACCCTTGGAGACAGAACACTGGGTTGTCTCCATAAAAAGACCCCGAAACACCATAAATTCACCGCTCAACACCTGGTGCTAGCCTGTGCCTtaacacacaaccacaaccatgcacacatacacacacacacaatatatatatatatatatatatataaaacacagtccacGTGACTCCAGTTAAGAACAGTCTGAGTCATATTTCTCAGTTATTCTATTAGCCCTGTGTTTTATTAGAACTGTATGTGAATATCAGGGGAGAAATCACTCCCCACAGATTGGACCTGTGTTTTAATAGAACTGTCTGTGAATATCAGGGGAGAAATCACTCCCCACAGATTGGACCTGTGTTTTAATTGACACGGATCATGTTCTGTGCCGTTGCGGGCTGTATCATACTGTTCAGATGGAACGCTGTTGAGTTCCTGTAGTTGTGTACTGTAGAGACAGTCTGAGAACAAAGTATCCACTCTGTCATTGCTGACACCTTATTGTAAAGCACTCTATCACAATCCAATACCAAAGCAGTGCAATACTACAAAGCAGTGCAATACTACCCAATAAAATGTCATTCATT
>TU138343
aaAATATTCAAAACAAAGGACGCTTTTGGACGACAGGAAAAGTTCTCGTAAACATCCAGCTCTTACAAGGATGGGCAGTCTTCCAATCGCCCTGCTCCTCTGCGGTTTCCATGCCCTCACAGCTGTAGCCCAAGCCCCGCAGGCTGAGGCGGAACTCCACAGAGGTGACTGGAATGAAGAGGAGGctttggtgtctgtctctaccctaccGCCTGACTGTAGGGAAGAGACGTACCCCTGTACCAGGATGTACTCTGTCCACCGGCCCATCAAGAGATGCATCCACTCCCTCTGCCTTTACAGCCTCCCTCGTGTCTATGTGATCAACAAGGAGATATGTGTTAGAACTGTCTGCCAACAGGATGAGTACCTGAAGGCTGAACTCTGCAGGGAGCGGTCCGGCTGGCCCAAACGCTTCCAGAGGTCAACCACCAATAAGAAACGCTGTCACAATCGCCGCAGCAACCCCAAAACCTGGCAAAACAAGGCCTGATGGGCCCAAGATggaggagatggaaggaggggcggaggaggaaggagagaaagagagaaggaggaggaaggagtaggAGGGAGGACACCCTTGGAGACAGAACACTGGGTTGTCTCCATAAAAAGACCCCGAAACACCATAAATTCACCGCTCAACACCTGGTGCTAGCCTGTGCCTtaacacacaaccacaaccatgcacacatacacacacacacaatatatatatatatatatatatataaaacacagtccacGTGACTCCAGTTAAGAACAGTCTGAGTCATATTTCTCAGTTATTCTATTAGCCCTGTGTTTTATTAGAACTGTATGTGAATATCAGGGGAGAAATCACTCCCCACAGATTGGACCTGTGTTTTAATAGAACTGTCTGTGAATATCAGGGGAGAAATCACTCCCCACAGATTGGACCTGTGTTTTAATTGACACGGATCATGTTCTGTGCCGTTGCGGGCTGTATCATACTGTTCAGATGGAACGCTGTTGAGTTCCTGTAGTTGTGTACTGTAGAGACAGTCTGAGAACAAAGTATCCACTCTGTCATTGCTGACACCTTATTGTAAAGCACTCTATCACAATCCAATACCAAAGCAGTGCAATACTACAAAGCAGTGCAATACTACCCAATAAAATGTCATTCATT

Function

NR:

description
microfibrillar-associated protein 5-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941028.1 False 1133 mRNA 0.47 5 19676656 19683059
XM_036941018.1 False 1234 mRNA 0.48 7 19676657 19683059
XM_036941027.1 False 1201 mRNA 0.48 6 19676657 19683059
TU138343 True 1156 TUCP 0.48 7 19676735 19683059

Neighbor

gene id symbol gene type direction distance location
LOC110537142 LOC106576877 coding upstream 31330 19637434 ~ 19645326 (+)
LOC110537165 LOC106605824 coding upstream 77240 19597513 ~ 19599416 (+)
LOC110537107 LOC106605819 coding upstream 97145 19565879 ~ 19579511 (+)
LOC110537095 LOC106576906 coding upstream 148737 19526163 ~ 19528660 (+)
LOC110537022 LOC106576929 coding upstream 195273 19444131 ~ 19481383 (+)
LOC118944064 NA coding downstream 15432 19698491 ~ 19699519 (+)
LOC110537243 LOC106576860 coding downstream 92370 19768270 ~ 19778335 (+)
LOC110537251 LOC106605841 coding downstream 113335 19796394 ~ 19828604 (+)
LOC110537257 LOC106576842 coding downstream 150330 19833389 ~ 19892698 (+)
ecac ecac coding downstream 215260 19898319 ~ 19910352 (+)
G119916 LOC106605822 non-coding upstream 81489 19591542 ~ 19595167 (+)
G119909 NA non-coding upstream 94282 19580821 ~ 19582374 (+)
G119883 NA non-coding upstream 113806 19552715 ~ 19562850 (+)
G119866 NA non-coding upstream 156979 19518941 ~ 19519677 (+)
G119795 NA non-coding upstream 170156 19504866 ~ 19506500 (+)
G119893 NA non-coding downstream 734 19683793 ~ 19685529 (+)
G119955 LOC106605829 non-coding downstream 27423 19710482 ~ 19713435 (+)
G119986 NA non-coding downstream 75399 19758458 ~ 19758725 (+)
G120018 NA non-coding downstream 136913 19819972 ~ 19821386 (+)
G120031 NA non-coding downstream 166440 19849499 ~ 19850437 (+)
G119794 u2af2 other upstream 169318 19506651 ~ 19507338 (+)
LOC110503718 LOC102193556 other upstream 419162 19131905 ~ 19259074 (+)
G119245 stl2 other upstream 715191 18934673 ~ 18992769 (+)
G119160 NA other upstream 1004336 18670513 ~ 18672320 (+)
G119952 nat14 other downstream 19040 19702099 ~ 19703788 (+)
G120059 grl1 other downstream 241013 19924072 ~ 19928477 (+)
casp2 LOC106605831 other downstream 335640 20018602 ~ 20030933 (+)
zyx zyx other downstream 462674 20145710 ~ 20165887 (+)

Expression


Co-expression Network