LOC118944062 (LOC106575151)


Basic Information

Item Value
gene id LOC118944062
gene name LOC106575151
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19692971 ~ 19695564 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961711.1
cccccacACTCATCACACCACTCGCTCTCGCCTGATTGACTGTGTGAGACAAATTAGGCTTCTGAAATGATCAACAAATTTGACAGTGTTCTGTTGGCCCAGAAGAAGTTTATCTACCACTATAAGAACATGCGCTGGGCCAAGGGCCGACACGAAACCTACCTGTGCTTTGTGGTCAAGAGGCGGGTGGGACCAAACTCACTCTCCTTCGACTTTGGACACCTGCGCAACCGGTCCGGCTGTCATgttgagCTGCTGTTCCTGCGCCTCCTGGAAGCAGGCGCCCTGTGTCCAGGCCTGTGGGGTTATGGAGCTCCAGACAGTGTGGGACTGTGTTACTCAGTCACCTGGTTCTGTTCCTGGTCCCCCTGCTCAGACTGCTCCTACAGGCTGGCCCAGTTCCTCAGCCAGACCCCCAACCTCCGCCTCAGGATCTATGTCTCCAGGCTCTACTTCTGTGACCCGGAGGACAGCAGTGCGAGAGAGGGTCTCCGCATGCTGCAGAGAGCCGGGGTGCAGATCACTGTCATGAACTATGAAGACTATTTCTACTGTTGGCAGACCTTTGTAGCTTGCAGACAGCGTGTGTTTAAGGCCTGGGACGGACTGCATCAGAACTCTGTTCAACTGGCCAGGAAACTTAACGACATCCTCCAgCCTGGTGAGGCAGAAGATTGGGGAGATGCTTTTGAGCTACTTGGACTGTGA
>TU139489
GCAGATCACTGTCATGAACTATGAAGGTAGAGAGGGTTTGTgtaagtgtgtgggtgtgtgagtacGTCTCTCATTATAATTCTGTCTCTTCCCTGTAGACTATTTCTACTGTTGGCAGACCTTTGTAGCTTGCAGACAGCGTGTGTTTAAGGCCTGGGACGGACTGCATCAGAACTCTGTTCAACTGGCCAGGAAACTTAACGACATCCTCCAgCCTGGTGAGGCAGAAGATTGGGGAGATGCTTTTGAGCTACTTGGACTGTGATTCACCTCTATCCCTGTCATATATGCTGATATGGAGCTATTTATTTATGCTCCTCCCACTGGTGCTATCTGTCAGTGTTTTACTGTAAAGATCACTTTAATCTATCACGGTAAAGTAAATAATAATAACTGAAATAGGTCAACTG
>TU139490
cctccccccacACTCATCACACCACTCGCTCTCGCCTGATTGACTGTGTGAGACAAATTAGGCTTCTGAAATGATCAACAAATTTGACAGTGTTCTGTTGGCCCAGAAGAAGTTTATCTACCACTATAAGAACATGCGCTGGGCCAAGGGCCGACACGAAACCTACCTGTGCTTTGTGGTCAAGAGGCGGGTGGGACCAAACTCACTCTCCTTCGACTTTGGACACCTGCGCAACCGGTCCGGCTGTCATgttgagCTGCTGTTCCTGCGCCTCCTGGAAGCAGGCGCCCTGTGTCCAGGCCTGTGGGGTTATGGAGCTCCAGACAGTGTG

Function

NR:

description
PREDICTED: single-stranded DNA cytosine deaminase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961711.1 False 708 mRNA 0.55 5 19693116 19695560
TU139489 False 410 lncRNA 0.43 2 19692971 19693500
TU139490 True 331 TUCP 0.50 3 19693689 19695564

Neighbor

gene id symbol gene type direction distance location
LOC110537155 necp1 coding downstream 476 19683835 ~ 19692640 (-)
LOC110537113 epn1 coding downstream 68032 19601898 ~ 19625084 (-)
LOC118936409 LOC106576885 coding downstream 97937 19591539 ~ 19595179 (-)
LOC110537188 LOC106605820 coding downstream 107446 19583047 ~ 19585670 (-)
LOC110537104 LOC106605828 coding downstream 136874 19554918 ~ 19556242 (-)
LOC110537161 nat14 coding upstream 7605 19703165 ~ 19706164 (-)
LOC110534366 LOC106605829 coding upstream 10733 19706293 ~ 19715203 (-)
il11 il-11 coding upstream 20014 19715574 ~ 19722525 (-)
LOC110537231 LOC106605844 coding upstream 67221 19762781 ~ 19773090 (-)
LOC110537264 LOC106605836 coding upstream 218895 19914455 ~ 19923922 (-)
G120772 NA non-coding downstream 9648 19682289 ~ 19683468 (-)
G120786 NA non-coding downstream 73504 19618613 ~ 19619612 (-)
G120745 NA non-coding downstream 118369 19519645 ~ 19574747 (-)
LOC110537080 LOC106576890 non-coding downstream 159218 19527995 ~ 19548154 (-)
G120738 NA non-coding downstream 200774 19492071 ~ 19492342 (-)
G120854 NA non-coding upstream 57858 19753418 ~ 19753636 (-)
G120858 NA non-coding upstream 81828 19777388 ~ 19778564 (-)
G120869 NA non-coding upstream 87632 19783192 ~ 19783409 (-)
G120871 NA non-coding upstream 91079 19786639 ~ 19786860 (-)
cacng6b LOC106606119 other downstream 204884 19484328 ~ 19499142 (-)
G119663 NA other downstream 644086 19048307 ~ 19049030 (-)
G119512 LOC105019016 other downstream 891729 18799500 ~ 18801387 (-)
LOC110534340 LOC106605761 other downstream 1046453 18627912 ~ 18646884 (-)
LOC110536756 ndufa3 other downstream 1150619 18541050 ~ 18543176 (-)
LOC110537275 grl1 other upstream 228538 19924063 ~ 19928533 (-)
G121046 NA other upstream 515508 20211068 ~ 20212367 (-)
LOC110509624 ret1 other upstream 767122 20462682 ~ 20465854 (-)
G121188 NA other upstream 803336 20498896 ~ 20500587 (-)
G121208 NA other upstream 930997 20626557 ~ 20627700 (-)
LOC118944062 LOC106575151 other upstream 189 19692971 ~ 19695564 (-)

Expression


Co-expression Network