LOC110537243 (LOC106576860)


Basic Information

Item Value
gene id LOC110537243
gene name LOC106576860
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19768270 ~ 19778335 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623137.2
CGATTACGCTTGCTCGTCCACTCACAACCTCCAACATCCCAGCATACACTGCGTTACGGTCTTCCGGTGAGAGAGGACATCAATCATACCAGAGAGGACACAAGAAACAGTCCAAGTGTTGACATAGTGAGACTGCCAGCTAGCCAGCATGTCTGACGTTATTGAGGAGAAGATAAAGAACTACAGGACGGCTCCCTTCGACGCCCGCTTCCCCAACACCAACCAGACCCGCAACTGCTTTCAGAACTATCTggACTTCCACAGGTGCAACAAAGCTTTGTCAGACAAAGGCCAGGATGTGGCTCCCTGTGACTGGTACCAGAGGGTCTACAAGAGTATCTGTCCCATGAGCTGGGTCGCCAAGTGGGACGACCAGATAGAGGCCGGAAGCTTTCCCGGAAAGATCTAAAATGGCTGACCTCAGGACTATCTGTTAGCCACACCTTCAACTTTGATCCCTGTAGTGTGACTAAGGACATGTGTTGACCACGTACCACACCATTCTTAATGTTATTAACAGTGTTACTTATGTTACAAGCACTTAATAAAAATGCGCACCCGTTTTGAA
>TU138435
aatggtTGATTAACTAGTAACACTATAATTGAAGTTCTGCTCATAAACTGCTTATAAAAAGCATACACTGCGTTACGGTCTTCCGGTGAGAGAGGACATCAATCATACCAGAGAGGACACAAGAAACAGTCCAAGTGTTGACATAGTGAGACTGCCAGCTAGCCAGCATGTCTGACGTTATTGAGGAGAAGATAAAGAACTACAGGACGGCTCCCTTCGACGCCCGCTTCCCCAACACCAACCAGACCCGCAACTGCTTTCAGAACTATCTggACTTCCACAGGTGCAACAAAGCTTTGTCAGACAAAGGCCAGGATGTGGCTCCCTGTGACTGGTACCAGAGGGTCTACAAGAGTATCTGTCCCATGAGCTGGGTCGCCAAGTGGGACGACCAGATAGAGGCCGGAAGCTTTCCCGGAAAGATCTAAAATGGCTGACCTCAGGACTATCTGTTAGCCACACCTTCAACTTTGATCCCTGTAGTGTGACTAAGGACATGTGTTGACCACGTACCACACCATTCTTAATGTTATTAACAGTGTTACTTATGTTACAAGCACTTAATAAAAATGCGCACCCGTTTTGAACCTG
>TU138434
CAACATCCCAGCATACACTGCGTTACGGTCTTCCGGTGAGAGAGGACATCAATCATACCAGAGAGGACACAAGAAACAGTCCAAGTGTTGACATAGTGAGACTGCCAGCTAGCCAGCATGTCTGACGTTATTGAGGAGAAGATAAAGAACTACAGGACGGCTCCCTTCGACGCCCGCTTCCCCAACACCAACCAGACCCGCAACTGCTTTCAGAACTATCTggACTTCCACAGGTGCAACAAAGCTTTGTCAGACAAAGGCCAGGATGTGGCTCCCTGTGACTGGTACCAGAGGGTCTACAAGAGTATCTGTCCCATGAGCTGGGTCGCCAAGTGGGACGACCAGATAGAGGCCGGAAGCTTTCCCGGAAAGATCTAAAATGGCTGACCTCAGGACTATCTGTTAGCCACACCTTCAACTTTGATCCCTGTAGTGTGACTAAGGACATGTGTTGACCACGTACCACACCATTCTTAATGTTATTAACAGTGTTACTTATGTTACAAGCACTTAATAAAAATGCGCACCCGTTTTGAACCTG
>TU138433
CGGTCTTCCGGTGAGAGAGGACATCAATCATACCAGAGAGGACACAAGAAACAGTCCAAGTGTTGACATAGTGAGACTGCCAGCTAGCCAGCATGTCTGACGTTATTGAGGAGAAGATAAAGAACTACAGGACGGCTCCCTTCGACGCCCGCTTCCCCAACACCAACCAGACCCGCAACTGCTTTCAGAACTATCTggACTTCCACAGGTGCAACAAAGCTTTGTCAGACAAAGGCCAGGATGTGGCTCCCTGTGACTGGTACCAGAGGGTCTACAAGAGTATCTGTCCCATGAGCTGGGTCGCCAAGTGGGACGACCAGATAGAGGCCGGAAGCTTTCCCGGAAAGATCTAAAATGGCTGACCTCAGGACTATCTGTTAGCCACACCTTCAACTTTGATCCCTGTAGTGTGACTAAGGACATGTGTTGACCACGTACCACACCATTCTTAATGTTATTAACAGTGTTACTTATGTTACAAGCACTTAATAAAAATGCGCACCCGTTTTGAACCTG

Function

NR:

description
PREDICTED: cytochrome c oxidase subunit 6B1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623137.2 False 568 mRNA 0.49 4 19775429 19778331
TU138435 False 591 TUCP 0.42 5 19768270 19778335
TU138434 False 541 TUCP 0.42 4 19775460 19778335
TU138433 True 516 TUCP 0.49 4 19775485 19778335
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118944064 NA coding upstream 75910 19698491 ~ 19699519 (+)
LOC110537226 LOC106575133 coding upstream 92370 19676656 ~ 19683059 (+)
LOC110537142 LOC106576877 coding upstream 130103 19637434 ~ 19645326 (+)
LOC110537165 LOC106605824 coding upstream 176013 19597513 ~ 19599416 (+)
LOC110537107 LOC106605819 coding upstream 195918 19565879 ~ 19579511 (+)
LOC110537251 LOC106605841 coding downstream 18063 19796394 ~ 19828604 (+)
LOC110537257 LOC106576842 coding downstream 55058 19833389 ~ 19892698 (+)
ecac ecac coding downstream 119988 19898319 ~ 19910352 (+)
LOC110537283 mprd coding downstream 167759 19946090 ~ 19953207 (+)
LOC110537299 LOC106605834 coding downstream 185583 19963914 ~ 19971980 (+)
G119986 NA non-coding upstream 16704 19758458 ~ 19758725 (+)
G119899 NA non-coding upstream 25205 19660907 ~ 19750224 (+)
G119955 LOC106605829 non-coding upstream 61994 19710482 ~ 19713435 (+)
G119893 NA non-coding upstream 89900 19683793 ~ 19685529 (+)
G119916 LOC106605822 non-coding upstream 180262 19591542 ~ 19595167 (+)
G120018 NA non-coding downstream 41641 19819972 ~ 19821386 (+)
G120031 NA non-coding downstream 71168 19849499 ~ 19850437 (+)
G120032 NA non-coding downstream 71405 19849736 ~ 19850902 (+)
G120048 NA non-coding downstream 101635 19879966 ~ 19881716 (+)
G120059 grl1 non-coding downstream 145741 19924072 ~ 19928477 (+)
G119952 nat14 other upstream 71641 19702099 ~ 19703788 (+)
LOC110537095 LOC106576906 other upstream 246769 19526163 ~ 19528660 (+)
G119794 u2af2 other upstream 268091 19506651 ~ 19507338 (+)
LOC110503718 LOC102193556 other upstream 517935 19131905 ~ 19259074 (+)
casp2 LOC106605831 other downstream 240368 20018602 ~ 20030933 (+)
zyx zyx other downstream 367402 20145710 ~ 20165887 (+)
G120211 NA other downstream 392751 20171082 ~ 20171381 (+)
LOC110537348 LOC106575899 other downstream 401077 20179254 ~ 20185414 (+)

Expression

LOC110537243(LOC106576860) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 500.
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LOC110537243(LOC106576860) Expression in each Bioproject

Bar chart with 21 bars.
LOC110537243(LOC106576860) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10000.
End of interactive chart.

Co-expression Network