ecac (ecac)


Basic Information

Item Value
gene id ecac
gene name ecac
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19898319 ~ 19910352 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124455.1
TCTTTCTCAAGTCAGCTTGACGTTGCATGTTCCCTTAGTACCTGACTGTCAATTAGGAGTAAAGGATTAACTGTTTTCTTCTGTAGAAGccatTTCAAATAGACTCACCATATGAGAGGATGGCCCCGGCCTTGGCAAGATCTGCTCCAGGTGAGCTCAACCATTGGTGGAGCCAGTTTAGGTTCCGCCTCCAGAACAGGAAGGGGTGGAAAGAGATGCTGGATGAAACTTTTTTGCTGCAGAACAAAAGGACGAATGGCGTCCCTCTCTTTTTTGCCGCCAAAGAGAACAGTGCAGGTTGCATTAAGAAACTTCTGGACTGTGCATCCACTAACATCTTTGAGAGAGGGGCTCTGGGGGAGACCGCGCTGCATGTGGCAGTTATGAATGATAACATGGAAGCTGCTTTAGCTCTGATGGACGGAGCACCTGAACTCATCAATGAgcccatgacctctgacctcttccTTGGCATGACACCTCTCCACATTGCCGTGGTGAATCAGAACTTTAACCTAGTCCGCAGTCTGATTGGTAAAGGGGCGGATGTGGCCACGCCCAGAGTCACAGGCCTGTACttcaggaagagaagaggagggctgCTCTACTATGGTGAGCACATCCTGGCATTTGCGGCCTGTGTGGGGAATCAGGACATCATCTCCATGGTGATCAACGCAGGAGCCAGCACCAGGGCCCAGGACTCCATTGGTAACACAGTGCTCCACATCCTGGTCCTGCAGCCCAATAAGACTATAGCATGCCTGGTGTTGGATCTGCTGTTGGCACGTGACATTGAGCTGGACCAGGCTGTGCCACTAGACATGGTGCCCAACTACCATGGCTTAACACCCTTCAAACTGGCTGCCAAGGAGGGCAACCTTGTGGCCTTCCAGCACCTGGTCAATCGGAGGCGAATCAACCAGTGGAACCTGGGACccttgacctctaacctctatgaCCTCACAGAGATCGACTCCTTGGTTGCCGACGACGACTGCTCTGTGCTTGAGCTCATCGTGGGCagcaagaggagagagGCAAAGAGGATACTGGAAGTGACTCCTGTTAGGCAATTGGTCAGTCTCAAGTGGAACCTCTATGGAAAACATTACTTTAGgttgttgctgctgctgtaccTCCTGTACATTGGGACCTTCACACTGTGTTGTGTGTATCGCCCCCTAAAGGACGCTCCAGAGAATTACACTGTATCTGACATGGACAAAACCATCCGCGTGCAGAAAACTCTGAAGGAGAGTTATGTGACCTATGGGGACAACTTGCGTCTGGCAGGAGAGATGATCAGTGTCCTGGGTGCCCTGGTTATTCTGCTACTGGAGGTCCCAGATATGCTGAGAGTAGGGGCCAAGCATTACTTTGGACAAACGGCCCTGGGGGGGCCCTTCCATGTCATTCTTATTGCCTATGCGTTCCTGGTggtgctgctgtgtgtgttcagggtcaGTGGGGTGCAGGGGGAAACAGTTGTCATGGCTGTGTGTCTGGTGCTGGGCTGGAGCAATGTTATGTTCTTCGCCCGAGGCTTTCAGATGCTGGGGCCTTACGTCATCATGATACAGAAGATTATATTTGGAGACCTGACCAAGTTCATGTGGCTGAGCTTCATCGTGCTCATAGGGTTTTCCACCCccctGTGGGTGGTGTATATGACTCAGGACCCAGACTCTCTACCTGCGTACCGCTCCTTCCCCATCACGCTGTTCTCCCAGTTTGAGCTGAGTGTGGGTCTGATAGACCTGCCAGTGGACCACACCATCACAACGCCCCCTATTGTCCATGTGCTGCACTGCACCTTCTCTGTGGTCTCCTACGTATTGCTGCTCAACCTGCTCACAGCCATGATGAGTGATACACAATGGAGAGTTGCCCAGGAGAGGGACGAGCTCTGGAGGACACAgGTGGTGGCCACTACCCTGATGTTGGAGAGAAGGTTGCCCCGCTGCCTGTGGCCCCGGCTGGGGGTGTGTGGACTGCTCTACGGCCTGGGGGAGCGGTGGTACCTCCGGGTTGAGGATCGCAACGACCCACTGGTGCAAAAGATGCGTCGCTACGTGCAAGCCTTCTCTAAGGATGAGGACCAGAGCAAGGAGcgggaggagatggagaacacTGACATGTCAAAAGGACCTGGAAGCCCTCTGATCAGACCCAAACACAGGGGTGGGATAGATGGATACAGGAAGTCCCTGGCACGCTGGCAGATGATTCGCCACAGCGCTCTGGGTTTAGATGTGGAACAGGAAGAGCCTGAGGATGACCAGGAAGTAAGATAGAGCTGAGGTTTAAGACAACAAAACAGATCGTTATGTTGTTATTATATAGTATACg

Function

NR:

description
epithelial calcium channel

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005262 calcium channel activity molecular_function

KEGG:

id description
K04975 TRPV6; transient receptor potential cation channel subfamily V member 6

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124455.1 True 2352 mRNA 0.53 16 19898319 19910352

Neighbor

gene id symbol gene type direction distance location
LOC110537257 LOC106576842 coding upstream 5621 19833389 ~ 19892698 (+)
LOC110537251 LOC106605841 coding upstream 69715 19796394 ~ 19828604 (+)
LOC110537243 LOC106576860 coding upstream 119988 19768270 ~ 19778335 (+)
LOC118944064 NA coding upstream 198800 19698491 ~ 19699519 (+)
LOC110537226 LOC106575133 coding upstream 215260 19676656 ~ 19683059 (+)
LOC110537283 mprd coding downstream 35738 19946090 ~ 19953207 (+)
LOC110537299 LOC106605834 coding downstream 53562 19963914 ~ 19971980 (+)
casp2 LOC106605831 coding downstream 108250 20018602 ~ 20030933 (+)
LOC110534391 clcn1 coding downstream 121539 20031891 ~ 20093717 (+)
zyx zyx coding downstream 235358 20145710 ~ 20165887 (+)
G120048 NA non-coding upstream 16603 19879966 ~ 19881716 (+)
G120032 NA non-coding upstream 47417 19849736 ~ 19850902 (+)
G120031 NA non-coding upstream 47882 19849499 ~ 19850437 (+)
G120018 NA non-coding upstream 76933 19819972 ~ 19821386 (+)
G119986 NA non-coding upstream 139594 19758458 ~ 19758725 (+)
G120059 grl1 non-coding downstream 13720 19924072 ~ 19928477 (+)
G120079 NA non-coding downstream 47342 19957694 ~ 19957965 (+)
G120085 NA non-coding downstream 50622 19960974 ~ 19961182 (+)
G120082 NA non-coding downstream 77051 19987403 ~ 19990796 (+)
G119952 nat14 other upstream 194531 19702099 ~ 19703788 (+)
LOC110537095 LOC106576906 other upstream 369659 19526163 ~ 19528660 (+)
G119794 u2af2 other upstream 390981 19506651 ~ 19507338 (+)
G120211 NA other downstream 260730 20171082 ~ 20171381 (+)
LOC110537348 LOC106575899 other downstream 269056 20179254 ~ 20185414 (+)

Expression


Co-expression Network