LOC110537348 (LOC106575899)


Basic Information

Item Value
gene id LOC110537348
gene name LOC106575899
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20179254 ~ 20185414 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623314.2
TGTTGTTGGAGGTACGTCTTTGTCAGTTTCGCTCAGAAAATGCAGTCTTCGTCAATCTGCCGCCATAGACGGCCGCCTCTGTCTAGTTATTCAAAAGAGCGGTAGAACCTTGGCAAAACTCCTCCATCAGTATGACGCGTTATTCCAGCGACTACCACCCCGAAGCAACATGGAAGCCCACAGTGGTGACAAGCGTGGTCTTGAGCATTTAGACGAATATGAACCCAAACCAGCAAAACATATGCGTAGCCTGCACGATCGCATGGTGGAAAGGCGACTAGTAGTTATTTTAGAGGGGGCAACGCTGGAAACAGTGAAGGTTGGCAAGACATTTGAACTGCTGAACTGTGACCAACACAAGGGCATGATCATCAAAAGTGGACGGGACCCAGGGAAGATTCGACCTGACATTACACATCAGTGTTTGTTGATGCTGATGGACAGTCCATTGAACAGGGCAGGTCTCCTGCAGGTTTACATCCACACAGAGAGGAACGCCTTGATTGAGATCAACCCACAGACACGCATCCCCCGAACCTTCAACCGCTTCTGTGGCCTCATGGTCCAGCTCTTGCACAAGCTGAGTGTGAGGGCGGCTGACGGCCCCCAGCGCCTGCTGAAGCTCATCAAGAACCCTGTGTCAGACCACCTGCCCCCTGGCTGCCCCCGTATTTGTACCTCGTTCTCCTCTGGGGAGGCAGTGGGCGCCCGCACCGTGGTACCAGAGGAGGGGCCCGCCACTGTGGTGGTCGGAGCATTTGCACACGGAGCGGTGAATGTGGACTACACAGAGAAGACTGTTTCCATCAGTAACTACCCTCTCTCTGCTGCCCTCACCTGTCTTAGGTGAATGTGGACTACACAGAGAAGACTGTTTCCATCAGTAACTACCCTCTCTCtgcttgtcctctcctgtcttaGGTGAATGTGGACTACACAGAGAAGACTGTTTCCATCAGTAACTACCCTCTCTCTGCTGCCCTCACCTGTCTTAGGTGAATGTGGACTACACAGAGAAGACTGTTTCCATCAGTAACTACCCTCTCTCtgcttgtcctctcctgtcttaGGTGAATGTGGGCTACACAGAGAATACTGTTTCCATCAGTAACTACCCTCTCTCTGCTGCCCTCACCTGTCTTAGGTGAATGTGGACTACACAGAGAAGACTGTTTCCATCAGTAACTACCCTCTCTCtgcttgtcctctcctg
>XM_021623307.2
TGTTGTTGGAGGTACGTCTTTGTCAGTTTCGCTCAGAAAATGCAGTCTTCGTCAATCTGCCGCCATAGACGGCCGCCTCTGTCTAGTTATTCAAAAGAGCGGTAGAACCTTGGCAAAACTCCTCCATCAGTATGACGCGTTATTCCAGCGACTACCACCCCGAAGCAACATGGAAGCCCACAGTGGTGACAAGCGTGGTCTTGAGCATTTAGACGAATATGAACCCAAACCAGCAAAACATATGCGTAGCCTGCACGATCGCATGGTGGAAAGGCGACTAGTAGTTATTTTAGAGGGGGCAACGCTGGAAACAGTGAAGGTTGGCAAGACATTTGAACTGCTGAACTGTGACCAACACAAGGGCATGATCATCAAAAGTGGACGGGACCCAGGGAAGATTCGACCTGACATTACACATCAGTGTTTGTTGATGCTGATGGACAGTCCATTGAACAGGGCAGGTCTCCTGCAGGTTTACATCCACACAGAGAGGAACGCCTTGATTGAGATCAACCCACAGACACGCATCCCCCGAACCTTCAACCGCTTCTGTGGCCTCATGGTCCAGCTCTTGCACAAGCTGAGTGTGAGGGCGGCTGACGGCCCCCAGCGCCTGCTGAAGCTCATCAAGAACCCTGTGTCAGACCACCTGCCCCCTGGCTGCCCCCGTATTTGTACCTCGTTCTCCTCTGGGGAGGCAGTGGGCGCCCGCACCGTGGTACCAGAGGAGGGGCCCGCCACTGTGGTGGTCGGAGCATTTGCACACGGAGCGGTGAATGTGGACTACACAGAGAATACTGTTTCCATCAGTAACTACCCTCTCTCTGCTGCCCTCACCTGTGCCAAGATGTGCTCTGCCTTTGAGGAGGTCTGGGGCGTGTTGTGATGAAGTTGACAGCACACTGCTGCTCCAGCTAAAACTGTTGTCAACATGGACTAGAAATGGATTGGACAGTCAAGGAACATTGTACAGAAACGATCCACTTCACCAATTACCTCCTGTGGATCCGTATGATTCTATGGGTGTATGTATTGTGTGTAAAATATGGTATCTTACATTTCTCAACTTAGGCAAAGTTTCAATATTAAATAAATACTGTTTTGAATACACCATCTGTAAGGACTTGGCACCAAATATGGTCTTCCTACTGGTTTTTGTATACATGTATCCAGTGCATCATTGTTCCCATGGTTATACAGTGGAAATAAATGGTATAGTTTGTCC
>TU138741
CCACCCCGAAGCAACATGGAAGCCCACAGTGGTGACAAGCGTGGTCTTGAGCATTTAGACGAATATGAACCCAAACCAGCAAAACATATGCGTAGCCTGCACGATCGCATGGTGGAAAGGCGACTAGTAGTTATTTTAGAGGGGGCAACGCTGGAAACAGTGAAGGTTGGCAAGACATTTGAACTGCTGAACTGTGACCAACACAAGGGCATGATCATCAAAAGTGGACGGGACCCAGGGAAGATTCGACCTGACATTACACATCAGTGTTTGTTGATGCTGATGGACAGTCCATTGAACAGGGCAGGTCTCCTGCAGGTTTACATCCACACAGAGAGGAACGCCTTGATTGAGATCAACCCACAGACACGCATCCCCCGAACCTTCAACCGCTTCTGTGGCCTCATGGTCCAGCTCTTGCACAAGCTGAGTGTGAGGGCGGCTGACGGCCCCCAGCGCCTGCTGAAGCTCATCAAGAACCCTGTGTCAGACCACCTGCCCCCTGGCTGCCCCCGTATTTGTACCTCGTTCTCCTCTGGGGAGGCAGTGGGCGCCCGCACCGTGGTACCAGAGGAGGGGCCCGCCACTGTGGTGGTCGGAGCATTTGCACACGGAGCGGTGAATGTGGACTACACAGAGAAGACTGTTTCCATCAGTAACTACCCTCTCT
>TU138748
ACTGGTTTTTGTATACATGTATCCAGTGCATCATTGTTCCCATGGTTATACAGTGGAAATAAATGGTATAGTTTGTCCTCTTGTTTCCATTGTTCCTTGTCAAAGAGACTGTAGGAGAGTAGGGAACAAAACAATTTCACTCATGATGGGGAGAAAAGTCATGTTTTCATGTAGTACTGGTCGAATAATCACTCAATATACATGTAATTTGGGAGTAACAATGTAATAAAAACCAATACAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623314.2 False 1213 mRNA 0.52 5 20179254 20184791
XM_021623307.2 False 1225 mRNA 0.49 5 20179254 20185250
TU138741 False 670 TUCP 0.55 5 20179408 20184625
TU138748 True 242 lncRNA 0.35 1 20185173 20185414

Neighbor

gene id symbol gene type direction distance location
zyx zyx coding upstream 13367 20145710 ~ 20165887 (+)
LOC110534391 clcn1 coding upstream 85537 20031891 ~ 20093717 (+)
casp2 LOC106605831 coding upstream 148321 20018602 ~ 20030933 (+)
LOC110537299 LOC106605834 coding upstream 207274 19963914 ~ 19971980 (+)
LOC110537283 mprd coding upstream 226047 19946090 ~ 19953207 (+)
nop2 LOC106576663 coding downstream 5035 20190285 ~ 20196858 (+)
LOC110537365 LOC106605735 coding downstream 11773 20197023 ~ 20201032 (+)
LOC110534400 ncapd2 coding downstream 16893 20202143 ~ 20228607 (+)
LOC118944183 NA coding downstream 17653 20202903 ~ 20203211 (+)
LOC118944182 NA coding downstream 19580 20204830 ~ 20205130 (+)
G120213 NA non-coding upstream 4767 20173740 ~ 20174487 (+)
G120212 NA non-coding upstream 6809 20172049 ~ 20172445 (+)
G120210 NA non-coding upstream 8498 20170545 ~ 20170756 (+)
G120209 NA non-coding upstream 9136 20169800 ~ 20170118 (+)
G120195 NA non-coding upstream 45278 20133774 ~ 20133976 (+)
G120184 NA non-coding downstream 26206 20211456 ~ 20212371 (+)
G120238 NA non-coding downstream 83248 20268498 ~ 20270723 (+)
G120254 NA non-coding downstream 127150 20312400 ~ 20312765 (+)
G120188 NA non-coding downstream 139852 20325102 ~ 20326230 (+)
G120211 NA other upstream 7873 20171082 ~ 20171381 (+)
G120059 grl1 other upstream 250777 19924072 ~ 19928477 (+)
LOC110537243 LOC106576860 other upstream 400919 19768270 ~ 19778335 (+)
G120259 NA other downstream 134489 20319739 ~ 20320256 (+)
G120169 NA other downstream 222612 20407862 ~ 20419128 (+)
erfl3 LOC106576393 other downstream 715024 20900204 ~ 20977481 (+)
LOC110509768 LOC106576258 other downstream 806504 20990131 ~ 21058856 (+)
LOC118938333 LOC106605563 other downstream 1356847 21532987 ~ 21547038 (+)
LOC110537348 LOC106575899 other upstream 548 20179254 ~ 20185414 (+)

Expression


Co-expression Network