Gene
RNA
| Item | Value |
|---|---|
| gene id | nop2 |
| gene name | LOC106576663 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 20190285 ~ 20196858 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase |
| id | name | namespace |
|---|---|---|
| GO:0006364 | rRNA processing | biological_process |
| GO:0032259 | methylation | biological_process |
| GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| K14835 | NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021623329.2 | True | 2895 | mRNA | 0.48 | 16 | 20190285 | 20196858 |
20,183,000
20,184,000
20,185,000
20,186,000
20,187,000
20,188,000
20,189,000
20,190,000
20,191,000
20,191,000
20,192,000
20,193,000
20,194,000
20,195,000
20,196,000
20,197,000
20,198,000
20,199,000
NC_048566.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110537348 | LOC106575899 | coding | upstream | 5035 | 20179254 ~ 20185414 (+) |
| zyx | zyx | coding | upstream | 24398 | 20145710 ~ 20165887 (+) |
| LOC110534391 | clcn1 | coding | upstream | 96568 | 20031891 ~ 20093717 (+) |
| casp2 | LOC106605831 | coding | upstream | 159352 | 20018602 ~ 20030933 (+) |
| LOC110537299 | LOC106605834 | coding | upstream | 218305 | 19963914 ~ 19971980 (+) |
| LOC110537365 | LOC106605735 | coding | downstream | 165 | 20197023 ~ 20201032 (+) |
| LOC110534400 | ncapd2 | coding | downstream | 5285 | 20202143 ~ 20228607 (+) |
| LOC118944183 | NA | coding | downstream | 6045 | 20202903 ~ 20203211 (+) |
| LOC118944182 | NA | coding | downstream | 7972 | 20204830 ~ 20205130 (+) |
| LOC118944180 | NA | coding | downstream | 8882 | 20205740 ~ 20206032 (+) |
| G120213 | NA | non-coding | upstream | 15798 | 20173740 ~ 20174487 (+) |
| G120212 | NA | non-coding | upstream | 17840 | 20172049 ~ 20172445 (+) |
| G120210 | NA | non-coding | upstream | 19529 | 20170545 ~ 20170756 (+) |
| G120209 | NA | non-coding | upstream | 20167 | 20169800 ~ 20170118 (+) |
| G120184 | NA | non-coding | downstream | 14598 | 20211456 ~ 20212371 (+) |
| G120238 | NA | non-coding | downstream | 71640 | 20268498 ~ 20270723 (+) |
| G120254 | NA | non-coding | downstream | 115542 | 20312400 ~ 20312765 (+) |
| G120188 | NA | non-coding | downstream | 128244 | 20325102 ~ 20326230 (+) |
| G120211 | NA | other | upstream | 18904 | 20171082 ~ 20171381 (+) |
| G120059 | grl1 | other | upstream | 261808 | 19924072 ~ 19928477 (+) |
| G120259 | NA | other | downstream | 122881 | 20319739 ~ 20320256 (+) |
| G120169 | NA | other | downstream | 211004 | 20407862 ~ 20419128 (+) |
| erfl3 | LOC106576393 | other | downstream | 703416 | 20900204 ~ 20977481 (+) |
| LOC110509768 | LOC106576258 | other | downstream | 794896 | 20990131 ~ 21058856 (+) |
| LOC118938333 | LOC106605563 | other | downstream | 1345239 | 21532987 ~ 21547038 (+) |
