opn9 (LOC106576962)


Basic Information

Item Value
gene id opn9
gene name LOC106576962
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20250289 ~ 20259650 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941236.1
GTTTTCATGCTTTCACTTTACTTCACTATAGTTGACTTGGTgcttagagaacactgggtttccATCATACTAATTGATAATCATAAGTCATTCGTTTTTCAAATGAACCACTTAATCAAGTATAAGTAATGAATTAGTGTCTGTTAGCTTTAATTAGTGAAAATGCTGTCACATGTTCTTCTAGTGACAGTAACACACAGCATGACTTCCTGGACGAAGGTGTGAGtcaacaggagagagaacatgttGATGGCTGAACACCTACTGCTACACACCAAGGCATCCTCTGATCTTGATGTCTCTGGGAGGAAATGGCTCGTGGAGGGTCTCTgtcccatcctccatccctcctgccTTCCTTTCTCACCTCTCCCCCAGCACTGACCTGGGAGTTGCCATCTTCCTCATCCTCACAGgtGTAGTGTCAGTGGTTGGGAATGGCATAGTGCTGTTGGTTTACTGTAGAAAGAAGAAGAAACTCAGACCACCAGAACTCATGACTATTAACCTGGCCATCTGTGATTTTGGATACAGCCTCTTGGGGGCGCCATGCCTCATAATTTCCAGTGTGTCCCATGGCTGGGTGTTTGGGGAAGCAGGGTGCCTGTGGTACGGGTTGCAGGGCTTTGTTTTTGGGATCGGCTCCCTCATCACCACCTGTCTCATCTCTCTGGACCGCTGCCTCAAGATCTGCAGCTTCAGATACGgtCAGTGGATCGAGAGACGTCACATGTCCATGTCCATAGGGCTGGTGTGGTTCTACTCTCTATTCTGGGCCTCCCTGCCTGTTTTTGGCTTCGGCAGCTACGGACCAGAACCCTTTGGGACCAGCTGCACCATCAACTGGTGGGGGATGAGGTCATCTTTGATCGACAGGGCCTACATCTTGCTGATCCTGATCATGTGCTTCTTTCTCCCCACACTGACCATCGTCGCCTCCTACATGACCATTCTGCTGACGgtttaCCGTTCTAGTCGCGCTCTGGCATCTATTCCCTCCTCAACTGTCACTCACACCAACAAAGACCTGAGACTCACAAAGatAGCAGCTGTGGTGTGCTCCACCTTCCTCTTATCCTGGACTCCCTATGCCATTGTCTCCCTCTACTCTGCCTTGGCCCCCAAGGATGAGCATTGGGCCGGGGAGGCCATGCAGGGAGGAGGCCCCTCCATGGGGACTGGAGGATCCACCGGGATGGCCTCAGCCTTCCCAAACATCCCCAACATTATGGGTCTCCTCAATTGGACCTCCACGGAAAACTACGGAAGCAACTACGGAAGTGTCTACTACGACCCTGGAGAATCCTTGCGGGACGTGACCAACCCAGATCCATACTCCTATTCTGGCTTAGGCCACAGTCTGTCTGCTGCTTCCACGCGCAGTTCAGCCCCAGGCCAGGAGGGGGAGTCGGAGACAGGGAGCAACCGGCCGGTGTCCTGCCTGCCACCTATGGTGTCTCTGATACCAGCAATGTTTGCCAAGTCTCACTGCATGATTAACCCTTTCATCTACCAGATCATGAACAAGGAGTTCAGAGAGGACGTGTACGACATACTGTTTGGGAGACAGaacggggagaggaggagaatgcaGGGAAGAGCAGGGAGCTACTCTGACAccCCCAAAGGCAGCCTCTCCTACTGCCACAGCTGGCGAGGGAGGAGCAACCCCAAGGCCATGCCCATGGTGGAgttgggaaagaaagagagggctGGCGACACCATCTCGGTGGGGTGGGACGCCCTGGGCATGGCGTCGCTGGACACACAGGTCAACATAGACGGGCAGAGTCTgagcgaagcagggagagagctggggggtTCCACCTCTAGTAGTCTGATGAccgagtgacagagggagagatggataagAGATGTTGAGAGGATGGAGGTGTTTAGGAGCAGAGACTTCTTTAAAAACAGctttaaaataaaacatgttttgtgtAAGAACAACCAGAGTATTGTATCATAGTGAGTGTTTTGAGTAGTgactctttttttaaatgtagccaAAACATTAGTATTATTATATAACCAACAATTATGATATGTAAAATATACACTGTTGTATTTTTACATATTGTgtgtattttttacctttatatCTAAGCACCAACAAGATGTCTGCTGCAGTTTTGAAAATGGTATTCCATCTTTTAGTTTAGTCTATTTTGtagtttttttgttgtctttgtcAACACTGTCCTGATAGGCCTGTAGGTTATGGTTTACATTATAGTTTCACACAATAGAATAGTGTGTAaaattgtatgtgtgtattttgTAACAAAATAAAATCGAGCCAAG
>XM_021623368.2
CTAAACATACACAGTTTATTGTAACCTTTCAAGTCAGACTTGTGTGTAGGTTGACTTTAAGCCCCATAAGAGCAGGATTGAAGATCAGGTTAATGTTGTAGTTCAGTTTGTAGCCAGTAAGCTATGTATTTATTTCAACATCCCAGTGTCTATCTCTCTCACGTCATGCTCAGACAAGGCAGTCATCTTATTGAAGAGAAGACTTGTGTCTCCTGGGTGTTGTTGCTCTCATTGTTAGACACATACAAATTATGAGTCAGTTACATGTGTACTCATGTTATTATATCACAATTGGTGATATCTCTTCTACGGCATTCAGTTTAAACAATGgatagagagataaagagtgacagagatacagagagagagagaaagagagcatggaagagagagaggaagagggtgagagcatagaagagagagaaagagattgatgagagtgtgtgagagagagagagagagggaggtcaaAAAGGCTCAGATCCTTCCATTTATTTTCCCTCTGTGTGCCTTTTCGGACCACACACTCACTGATCATTTCTCCGCCAGATTGTCGACAGCAAGTTGATTTACTCTTCTCAGAAATAGAGCACAAAAATTGACAGAGGCTTAAGATTTAAAAAAGAGCTTAACTcacaacacagacagactgaaCAAAAGAGTGAGATAGGAAGTaaaaaagagaggtagagaggggcaGGTTGACCGACGAAGAGGAAGTTGATGTCTCTGGGAGGAAATGGCTCGTGGAGGGTCTCTgtcccatcctccatccctcctgccTTCCTTTCTCACCTCTCCCCCAGCACTGACCTGGGAGTTGCCATCTTCCTCATCCTCACAGgtGTAGTGTCAGTGGTTGGGAATGGCATAGTGCTGTTGGTTTACTGTAGAAAGAAGAAGAAACTCAGACCACCAGAACTCATGACTATTAACCTGGCCATCTGTGATTTTGGATACAGCCTCTTGGGGGCGCCATGCCTCATAATTTCCAGTGTGTCCCATGGCTGGGTGTTTGGGGAAGCAGGGTGCCTGTGGTACGGGTTGCAGGGCTTTGTTTTTGGGATCGGCTCCCTCATCACCACCTGTCTCATCTCTCTGGACCGCTGCCTCAAGATCTGCAGCTTCAGATACGgtCAGTGGATCGAGAGACGTCACATGTCCATGTCCATAGGGCTGGTGTGGTTCTACTCTCTATTCTGGGCCTCCCTGCCTGTTTTTGGCTTCGGCAGCTACGGACCAGAACCCTTTGGGACCAGCTGCACCATCAACTGGTGGGGGATGAGGTCATCTTTGATCGACAGGGCCTACATCTTGCTGATCCTGATCATGTGCTTCTTTCTCCCCACACTGACCATCGTCGCCTCCTACATGACCATTCTGCTGACGgtttaCCGTTCTAGTCGCGCTCTGGCATCTATTCCCTCCTCAACTGTCACTCACACCAACAAAGACCTGAGACTCACAAAGatAGCAGCTGTGGTGTGCTCCACCTTCCTCTTATCCTGGACTCCCTATGCCATTGTCTCCCTCTACTCTGCCTTGGCCCCCAAGGATGAGCATTGGGCCGGGGAGGCCATGCAGGGAGGAGGCCCCTCCATGGGGACTGGAGGATCCACCGGGATGGCCTCAGCCTTCCCAAACATCCCCAACATTATGGGTCTCCTCAATTGGACCTCCACGGAAAACTACGGAAGCAACTACGGAAGTGTCTACTACGACCCTGGAGAATCCTTGCGGGACGTGACCAACCCAGATCCATACTCCTATTCTGGCTTAGGCCACAGTCTGTCTGCTGCTTCCACGCGCAGTTCAGCCCCAGGCCAGGAGGGGGAGTCGGAGACAGGGAGCAACCGGCCGGTGTCCTGCCTGCCACCTATGGTGTCTCTGATACCAGCAATGTTTGCCAAGTCTCACTGCATGATTAACCCTTTCATCTACCAGATCATGAACAAGGAGTTCAGAGAGGACGTGTACGACATACTGTTTGGGAGACAGaacggggagaggaggagaatgcaGGGAAGAGCAGGGAGCTACTCTGACAccCCCAAAGGCAGCCTCTCCTACTGCCACAGCTGGCGAGGGAGGAGCAACCCCAAGGCCATGCCCATGGTGGAgttgggaaagaaagagagggctGGCGACACCATCTCGGTGGGGTGGGACGCCCTGGGCATGGCGTCGCTGGACACACAGGTCAACATAGACGGGCAGAGTCTgagcgaagcagggagagagctggggggtTCCACCTCTAGTAGTCTGATGAccgagtgacagagggagagatggataagAGATGTTGAGAGGATGGAGGTGTTTAGGAGCAGAGACTTCTTTAAAAACAGctttaaaataaaacatgttttgtgtAAGAACAACCAGAGTATTGTATCATAGTGAGTGTTTTGAGTAGTgactctttttttaaatgtagccaAAACATTAGTATTATTATATAACCAACAATTATGATATGTAAAATATACACTGTTGTATTTTTACATATTGTgtgtattttttacctttatatCTAAGCACCAACAAGATGTCTGCTGCAGTTTTGAAAATGGTATTCCATCTTTTAGTTTAGTCTATTTTGtagtttttttgttgtctttgtcAACACTGTCCTGATAGGCCTGTAGGTTATGGTTTACATTATAGTTTCACACAATAGAATAGTGTGTAaaattgtatgtgtgtattttgTAACAAAATAAAATCGAGCCAAG

Function

NR:

description
melanopsin-B-like

GO: NA

KEGG:

id description
K08385 OPN5; G0-opsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941236.1 False 2310 mRNA 0.49 9 20250289 20259650
XM_021623368.2 True 2738 mRNA 0.48 9 20250595 20259650

Neighbor

gene id symbol gene type direction distance location
LOC100329212 LOC100135813 coding upstream 991 20243430 ~ 20249298 (+)
cnp-1-2 cnp-1-2 coding upstream 18074 20227621 ~ 20232215 (+)
LOC118944184 NA coding upstream 41138 20208863 ~ 20209151 (+)
LOC118944180 NA coding upstream 44257 20205740 ~ 20206032 (+)
LOC118944182 NA coding upstream 45159 20204830 ~ 20205130 (+)
LOC110537377 LOC106576644 coding downstream 165 20259815 ~ 20297138 (+)
LOC110509548 LOC106575195 coding downstream 38836 20298486 ~ 20310775 (+)
LOC110509528 tnr1a coding downstream 66728 20326378 ~ 20337673 (+)
plekhg6 LOC106605732 coding downstream 78602 20338252 ~ 20353846 (+)
LOC110509663 LOC100194563 coding downstream 102767 20362226 ~ 20364212 (+)
LOC110534400 ncapd2 non-coding upstream 26653 20202143 ~ 20228607 (+)
G120184 NA non-coding upstream 37918 20211456 ~ 20212371 (+)
LOC110537348 LOC106575899 non-coding upstream 64875 20179254 ~ 20185414 (+)
G120213 NA non-coding upstream 75802 20173740 ~ 20174487 (+)
G120212 NA non-coding upstream 77844 20172049 ~ 20172445 (+)
G120238 NA non-coding downstream 8848 20268498 ~ 20270723 (+)
G120254 NA non-coding downstream 52750 20312400 ~ 20312765 (+)
G120188 NA non-coding downstream 65452 20325102 ~ 20326230 (+)
G120263 NA non-coding downstream 81324 20340974 ~ 20341290 (+)
G120268 LOC106605731 non-coding downstream 95088 20354738 ~ 20355147 (+)
G120211 NA other upstream 78908 20171082 ~ 20171381 (+)
zyx zyx other upstream 93179 20145710 ~ 20165887 (+)
casp2 LOC106605831 other upstream 225306 20018602 ~ 20030933 (+)
G120059 grl1 other upstream 321812 19924072 ~ 19928477 (+)
G120259 NA other downstream 60089 20319739 ~ 20320256 (+)
G120169 NA other downstream 148212 20407862 ~ 20419128 (+)
erfl3 LOC106576393 other downstream 640624 20900204 ~ 20977481 (+)
LOC110509768 LOC106576258 other downstream 732104 20990131 ~ 21058856 (+)
LOC118938333 LOC106605563 other downstream 1282447 21532987 ~ 21547038 (+)

Expression

opn9(LOC106576962) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
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opn9(LOC106576962) Expression in each Bioproject

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opn9(LOC106576962) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network