LOC110509570 (LOC106575203)


Basic Information

Item Value
gene id LOC110509570
gene name LOC106575203
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20312626 ~ 20318150 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590531.2
TGTAGTCCTATTCACTCTGAAGTTACCTTGTCATCAAAGCAACAGATGAGTGTAATGTAGTCCTATTCACTCTGAAGTTACCTTGTCATCAAAGCAacagagcaagtgagagagagagagagagacagacggacataAGAGAGTCTTAAAGATTGTTTTGGAACCTAATATCACAGTTTTTTATGAAAGACAGACGACCGACAAACGGCAGTGGAAagacagggggaggaagaggggcaaGTTTAGGGTTTTAAGCGGCACAGTGGTTCAGAGTGAACTAGGGGGGTCgtcatagagagaaagagagagagataggagtcTTTTGAAATGGCAGTTTCCCTTATGACTCATCTTTTGAATAATACTCTGACACACTGTGATCCCCAGTTCAGTCACACAGTCAGAGGGTCCAGAGTCACATCTATCtcattctctcatcctctctgagACACGATGCATCTCTTCTGGTGGATCACCCACAtctttctatccctcccttctctcctctctcttgtccaATCCCTCACGTGCGACAATGAGAAACAGTATGCTTGGCCACTGCATGACAGCCAATGGTGCTGCAACAAGTGTCCACCAGGTCAGCATCTGGTGGGACGCTGCACCGGTCAGAACAGCCCTACCCAGTGTGCTGACTGCGCCAGCGGCTACTACTCAGACAGCTACAACTTCAACATAGGCTGCAAATCCTGCGACGGCTGCAGCAtgagtgAGCTGCAGTATGTATCTAACTGTTCCACCAAGCAGAATGATGTGTGCAGCTGTAAACCAGGCTACCGCTGCAGAGGAAGTGGCACCTGTCTGGACTGTGAGGAGATCCCCAGCCCGAACACACCCAAACTCATACCGACACCTCCCATCATGCCAGCTACAGTGTCAAACCACTCGGTGCCTGGTATCCCTAATCATAGACCTAAACCTGTCACCAAACCTGGTACTGGGCCCAGAACAAATCCAAACCAAGatgATAGCAAGTGGCTcccggtgtgtgtgtctgcagtgtgtgtgtgtctactgctCACCTGCCTTGTTGCCATCTCAAAGCTCAAACCTTTTCTGCGATGGATTGGTTCACCAAACAGCTTCTGGTCTCCCAAAAAGACAACTCCAGCCAATCAGAGCACAGCGGAGGAGGAAGTGCCCATGCCGGTCCAGGAAGTGTGTGGAAAGCCAGAGCTGCTACTAGACGTTTGATGGAGGAAGTCAGTGTCAAAGGAGAGG
>TU139888
aagagagagagataggagtcTTTTGAAATGGCAGTTTCCCTTATGACTCATCTTTTGAATAATACTCTGACACACTGTGATCCCCAGTTCAGTCACACAGTCAGAGGGTCCAGAGTCACATCTATCtcattctctcatcctctctgagACACGGTAAGTCAGACTCTACACTTCCCTACTGAAACACGTTTTGTTCAGGTCTGTCGTTAGAGTCCTGGGCTTGCTTGATGTATCTATAATGGTATACAGTCAGACTCTACACTTCCCTACTGAAACACGTTTTGTTCAGGTCTGTTGTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590531.2 False 1239 mRNA 0.50 6 20312626 20318150
TU139888 True 301 lncRNA 0.35 2 20316640 20317850

Neighbor

gene id symbol gene type direction distance location
LOC110537330 fam131b coding downstream 180745 20094421 ~ 20131881 (-)
LOC110537306 LOC106605737 coding downstream 305783 20001127 ~ 20006843 (-)
gstk1 gstk1 coding downstream 315405 19987402 ~ 19997221 (-)
LOC110534384 LOC106605832 coding downstream 325346 19975980 ~ 19987280 (-)
LOC110534373 LOC106605835 coding downstream 369249 19929534 ~ 19943377 (-)
lag-3 lag-3 coding upstream 35964 20354114 ~ 20356998 (-)
tapbpl LOC100136300 coding upstream 53955 20372105 ~ 20377151 (-)
LOC110503568 c1r/c1s coding upstream 73827 20391977 ~ 20399493 (-)
LOC118936525 LOC106605721 coding upstream 95349 20413499 ~ 20420924 (-)
LOC110503575 LOC106605669 coding upstream 120645 20438795 ~ 20452556 (-)
G121044 LOC100135813 non-coding downstream 63327 20213812 ~ 20249299 (-)
G121093 NA non-coding downstream 88940 20222336 ~ 20223686 (-)
G121087 NA non-coding downstream 102190 20210156 ~ 20210436 (-)
G121086 NA non-coding downstream 102990 20209432 ~ 20209636 (-)
G121064 NA non-coding downstream 137549 20174733 ~ 20175077 (-)
G121152 NA non-coding upstream 1589 20319739 ~ 20320263 (-)
G121153 NA non-coding upstream 26345 20344495 ~ 20344730 (-)
G121160 LOC100194563 non-coding upstream 44073 20362223 ~ 20364183 (-)
G121167 NA non-coding upstream 110453 20428603 ~ 20434075 (-)
G121168 NA non-coding upstream 110706 20428856 ~ 20434379 (-)
G121046 NA other downstream 100259 20211068 ~ 20212367 (-)
LOC110537275 grl1 other downstream 384166 19924063 ~ 19928533 (-)
LOC118944062 LOC106575151 other downstream 617062 19692971 ~ 19695564 (-)
cacng6b LOC106606119 other downstream 824394 19484328 ~ 19499142 (-)
G119663 NA other downstream 1263596 19048307 ~ 19049030 (-)
LOC110509624 ret1 other upstream 144532 20462682 ~ 20465854 (-)
G121188 NA other upstream 180746 20498896 ~ 20500587 (-)
G121208 NA other upstream 308407 20626557 ~ 20627700 (-)
G121421 LOC106576258 other upstream 738448 21056598 ~ 21058849 (-)
G121533 LOC106583873 other upstream 970466 21288616 ~ 21346687 (-)

Expression


Co-expression Network