tapbpl (LOC100136300)


Basic Information

Item Value
gene id tapbpl
gene name LOC100136300
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20372105 ~ 20377151 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124554.1
AAGCTTCTCTAAATTCTGCAATGACGCACCTGCTTCGAACGCTGAAAACAACTTAGAACGCAATAAGAAAAATACACGCTGGAAACATGGCATCTATTAATCGATGTTTGATAAATCAATAGGTCTGATCATTCTTAATATGTCAAACTAATAACGTTCTACGTGAACATTTAATTAACCATTTGTAACTTTATTTGATTTACCTCCAAACAAAAGTGAAAGTAACTTCACTGTATAACAGCCTAACATTTTAACTGTCTCTAAATTGTATTTGGTTTCGAGCGTGGTCATTAATTAAATTGTGAAATTAGGGGTCTATTCTGTATATTTATGAATGGTCAGTAATTACTGTTGAATAAAAAACTACTGGAAAGATGCTTGAAATCCTGCTTTTTGGATATTTGATTACATGCGTTTCTGgCCAGGGAGGAGCAGACGTGGTGCTGTCATGTtctctggtggaggagggtagtGGGATGGGGGGAATGGGAGGTGGGGCTCTCTTCAGCCGCACCCCAGCAACACTTGTcctcagagacctggccgtgacCCCTGATCTTTCACCTGATACTCTGACCCCCTTCAACCCTCCTGCTGTCCCCGATCCTGACAACATCATCTTGGAGGCTAAAGTTGAGTCTCCTGAGATCCCAGAGGCAGACCTGCTGCTCCACGCTGACTGTAACGAGCAGGAAGTGACATGTGAGATCAGCCGCTACTTCCCTCGTAATGCCAAGGAGGGCTCCACAGAACCAGCCTATTTCATTGGCTCCTTGCAGATAGAGGGGGGTGGGCTCAGCCTCACATTGGTCCTGCAGACACTGCCACTGGACCAATCAGATCGTCCAGCTCTCATGCAGAGCAAACTGGAACTCCCCCTCAGCCAATCAGGAACTTTGCTGACTGAGGTGGTGTTCCTGGTGTTCTCTCGCTCAGAGTCCCACTCCGCTCCTCTAAGGGGCATGGCCCTCCTGGACTGTGGCTTCAGGCAGCAGGCCCCACCCCCAGGGCGGGAGCTGGGGCTTGAGTGGCGGCTGCAGCACAGAGGAAGTGGGAGGAAAGTGCTGGAGATTAGGGCGGGGCAgacggagacagaggaggggcCAGCAGTACACGTGGAGAGGGAGGGTTCGAGCGTGGATGCCGCCCTGCTGGTGGGGCAGGGTAATGCGTCTCTGACTCTGGCCAGACTGAAGGTATCTGACGAGGGGACCTACATCTGCACCGTCAGCACTGGACTGTACCAGGCCCAGCAGGTCATACAGCTACACGTCACACAACCTcctcatgtttctctctctgaggaGAAGCTGGTATTTTGGGATGAGTTGCCCCAGAAACTGAGCTGCCACTGCAAGAACTACTACCCTCTGGATGTCCAGatGGAGTGGTTCTCCGTCTCCTCTACAGACTCAGAGCCTAGCGTCCTATCAGACCAGGTGTCTCTCTCCAGCCATCGGCAGCACAGCGACAGGACCATGTCCATCTCCTCCCACCTCACCCTTCACCCCTCCACCTTCCCCCCTGGAACCACGGTCACCTGCAGAGTGACCCACCCGGCCCTGGACACACCCCTCTCCCTCAGCCTGACAGTAGAGACACCTGAGCCAGATTCCTACTGGATGGTCCTGGGTTTTCTGGTTATCACCATTCTGTTCTTCTACCAAGTGATGAAATAGAGTTCCGACCTAATTCACAGACCTGGATTCTTTCAGGGTCGCAGAGGCACAGCACCTGAAGCTGTTGAAAACCAATATCTTAAAGAGTTGCTGTAATGTGAATTACTGTTGTACTATAAACAGTTGTACATTTTcttcaaataaatgttttcttCGATAGTA

Function

NR:

description
tapasin-related precursor

GO:

id name namespace
GO:0019885 antigen processing and presentation of endogenous peptide antigen via MHC class I biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124554.1 True 1841 mRNA 0.50 9 20372105 20377151

Neighbor

gene id symbol gene type direction distance location
lag-3 lag-3 coding downstream 15107 20354114 ~ 20356998 (-)
LOC110509570 LOC106575203 coding downstream 53955 20312626 ~ 20318150 (-)
LOC110537330 fam131b coding downstream 240224 20094421 ~ 20131881 (-)
LOC110537306 LOC106605737 coding downstream 365262 20001127 ~ 20006843 (-)
gstk1 gstk1 coding downstream 374884 19987402 ~ 19997221 (-)
LOC110503568 c1r/c1s coding upstream 14826 20391977 ~ 20399493 (-)
LOC118936525 LOC106605721 coding upstream 36348 20413499 ~ 20420924 (-)
LOC110503575 LOC106605669 coding upstream 61644 20438795 ~ 20452556 (-)
LOC110509624 ret1 coding upstream 85538 20462682 ~ 20465854 (-)
LOC110509434 NA coding upstream 88830 20465981 ~ 20504869 (-)
G121160 LOC100194563 non-coding downstream 7922 20362223 ~ 20364183 (-)
G121153 NA non-coding downstream 27375 20344495 ~ 20344730 (-)
G121152 NA non-coding downstream 51842 20319739 ~ 20320263 (-)
G121044 LOC100135813 non-coding downstream 122806 20213812 ~ 20249299 (-)
G121167 NA non-coding upstream 51452 20428603 ~ 20434075 (-)
G121168 NA non-coding upstream 51705 20428856 ~ 20434379 (-)
G121174 NA non-coding upstream 90001 20467152 ~ 20468133 (-)
G121175 NA non-coding upstream 91860 20469011 ~ 20470007 (-)
G121176 NA non-coding upstream 92957 20470108 ~ 20471953 (-)
G121046 NA other downstream 159738 20211068 ~ 20212367 (-)
LOC110537275 grl1 other downstream 443645 19924063 ~ 19928533 (-)
LOC118944062 LOC106575151 other downstream 676541 19692971 ~ 19695564 (-)
cacng6b LOC106606119 other downstream 883873 19484328 ~ 19499142 (-)
G119663 NA other downstream 1323075 19048307 ~ 19049030 (-)
G121188 NA other upstream 121745 20498896 ~ 20500587 (-)
G121208 NA other upstream 249406 20626557 ~ 20627700 (-)
G121421 LOC106576258 other upstream 679447 21056598 ~ 21058849 (-)
G121533 LOC106583873 other upstream 911465 21288616 ~ 21346687 (-)

Expression


Co-expression Network