LOC110503568 (c1r/c1s)


Basic Information

Item Value
gene id LOC110503568
gene name c1r/c1s
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20391977 ~ 20399493 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941286.1
GTCAATTGTAGTCTTttaactccaccaccaccactactctgtctctcgggccctttcactctctccctcttccccccttctcattCGTCTATTTCAGCCAAGTCAAACAGAGCAGGTTTTAACATGACTTTTAGACTCGTAGTCTAGCATAATACCTCACCATAGGTCTCTATTGGGACACACAGACTGCAAGGAATTCAAGTCTAATACATGTGAGCAATAGCCACACAACAGTAAAACAATAACAACAGAAACATTTGTAGCCAGGACCTTCAACATGGACTGGACCCATCCGTTCATCTGgctgctgtgtgtgtctgtgtgtgagtgttggcGGTTGGCCCGGTCCCTGCCAGCCCTACATGGGGTGGTCCAGTCCCCCCAGTTCCCCCAGCCGTATCCAGCTGCCCTGTCACAACAGTGGGACCTCAGTGTACCTGAGGGCTACCAGCTCCAGCTCAGCTTCACTCACCTGGACATCAGGCCGTCAGCCGACTGCTACTACGACTCCCTCACGGTTGTATATGACAAGAAGGTCCTTGCAAAGTTCTGTGGTCAGGAGAATTCTGCTGATGGACATCACCCAGGCAACCGGCCACTTTTGTCTCCAGGCAACAGGCTCACCCTGGTCCTTCAGACAGACGACACAAACCCTGAGCCATACCATCACCTCGGCTTCTCCGCCCATTATCAGGCCAAAGACATAGATGAGTGTTCAGCTCCAGACCCTGTGGATGGTTCTGGTCCACTCTGCTCCCAGATCTGCCACAACACCCTGGGCTCCTACATGTGCTCCTGTCGCCATGGCTACGAGCTCCGCCCTGACCAGCGCACCTGTGTCTtGTCCTGTGGTAGGGGTATATTTGATGAACCAGGGGGGACACTGTCCAGCCCAGGGTACCCTGACCCATCACCCCACGGCCTGGCCTGTCAGTACGTCATCTCTGTGGAGCCTGGGTTCATCGTCAATCTCAACTTCACTGACAGCTTCCACATAGAGCACATAGGCACCCAGAATGGACCCAGCTGCCTCTACCACTGGTTACAGGTGTCCATCCCCGACAAGGAACCCCAGAAGCTGTGTGGAGGGAAGAGTCCTGGACTAATGCCCACTAACTCTTACACTGTCCAGCTAGACTACCACACTGACTGGGCTGGTCTGAGCCAGGGCTGGAGCCTGCACTACACTActcagaGGGTGCAGTGTGCTTCACCCAGTTCTATCACCAATGGAAGAGTCACCCCAAACGTTCCCCAGTACTATTACAGAGACTACATCCAAGTCAGCTGTGACCCTGGCTACAAACTAATGATGgatGGCAGAGAGATCAAGAGCTATGCCTCCATGTGTCAAAAGAATGGGCAGTggcatctctccctccctgagtGCCACATAATTGACTGTGGGGAACCCGAAGCATTGCTGAATGGAGGGGTAAAGTTAATATCTGGCTCTCAGAACCAGCACCTCTCCGTCATTCAGTACCACTGCAATGAACCTTTCTACTCACTCCTTGGAGGAGCAACTGtGAGCTACACGTGTGCAGCAGATAGAACATGGAGAGACAACCTTCACACCCCTGTCATTCCCTCATGTATCCCAGTCTGTGGCCGGCCCACGGTGTCCGTCTCAGGCTTTCAGAGGATCATGGGGGGAGACAAAGCCCCAGACAAAACCATCCCCTGGCAGGTGATGCTCAGTGTGGAGGGAGGCAAAGGAGGGGCCATGGTGATCGGGGACCGCTGGATCATGACTGCAGCTCATAACCTGGTGCGGCAGGGCAAACTTGTGCTAAAGGAGAAAGTTTGGGTTTTTTTGGGAGACAATGATGCAGAAAAACTAGCAAAGCTCACCCCACTTGGTGTCgcctccctccacccccaccctgaatacaaaaacacagacaGTGCAAACTACAATCATGACATCGCCCTGATAAAACTCCAACAACCACTCACATTCCACGCTGCCATCATGCCATTGTGTCTGCCACCAGAGAACGCTACATACAACAGTGGCCAGATTGGTATGGTGTCAGGCTTTGGCGTGCAAGAAGATGATATACTTGCCAACAATCTCAGGTACATACTCCTACCAGTAGTGAAAGAGGATGAGTGCCAAGACTCTGTCAACAGAGCAAAAGCAGCAACGCCAACAGAGAAGATCCCTGTTCTGACAGACAACATGTTCTGTGCCGGAGTACCTGAGGGGGGCAAGGACTCCTGTATGGGGGACGGTGGAGGGGCATACGTCTTGAGGGATAGTATTACTAAACGGTTTTGGGCTGCAGGTATTGTCAGTTGGGGTGTGGGTTGTGGGCAGACTGGTAGATATGGAGTGTATACCCGTGTGGCTAAATACATTAGCTGGATCAATAAAACCATGGAGGACAATAAGTAAAATATATAGGCAAAGACAACGAGGGAAAAAGAACAGAAATACAAAAGTATTTTCAATTCAAGTCATGATCTATGAATCCAAATAAAGCCCACAAGTTTCATCTCT

Function

NR:

description
complement C1r subcomponent precursor

GO:

id name namespace
GO:0006956 complement activation biological_process
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01330 C1R; complement component 1, r subcomponent

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941286.1 True 2506 mRNA 0.51 13 20391977 20399493

Neighbor

gene id symbol gene type direction distance location
tapbpl LOC100136300 coding downstream 14826 20372105 ~ 20377151 (-)
lag-3 lag-3 coding downstream 34979 20354114 ~ 20356998 (-)
LOC110509570 LOC106575203 coding downstream 73827 20312626 ~ 20318150 (-)
LOC110537330 fam131b coding downstream 260096 20094421 ~ 20131881 (-)
LOC110537306 LOC106605737 coding downstream 385134 20001127 ~ 20006843 (-)
LOC118936525 LOC106605721 coding upstream 14006 20413499 ~ 20420924 (-)
LOC110503575 LOC106605669 coding upstream 39302 20438795 ~ 20452556 (-)
LOC110509624 ret1 coding upstream 63196 20462682 ~ 20465854 (-)
LOC110509434 NA coding upstream 66488 20465981 ~ 20504869 (-)
LOC110537414 LOC106576265 coding upstream 106730 20506223 ~ 20582957 (-)
G121160 LOC100194563 non-coding downstream 27794 20362223 ~ 20364183 (-)
G121153 NA non-coding downstream 47247 20344495 ~ 20344730 (-)
G121152 NA non-coding downstream 71714 20319739 ~ 20320263 (-)
G121093 NA non-coding downstream 168291 20222336 ~ 20223686 (-)
G121167 NA non-coding upstream 29110 20428603 ~ 20434075 (-)
G121168 NA non-coding upstream 29363 20428856 ~ 20434379 (-)
G121174 NA non-coding upstream 67659 20467152 ~ 20468133 (-)
G121175 NA non-coding upstream 69518 20469011 ~ 20470007 (-)
G121176 NA non-coding upstream 70615 20470108 ~ 20471953 (-)
G121046 NA other downstream 179610 20211068 ~ 20212367 (-)
LOC110537275 grl1 other downstream 463517 19924063 ~ 19928533 (-)
LOC118944062 LOC106575151 other downstream 696413 19692971 ~ 19695564 (-)
cacng6b LOC106606119 other downstream 903745 19484328 ~ 19499142 (-)
G119663 NA other downstream 1342947 19048307 ~ 19049030 (-)
G121188 NA other upstream 99403 20498896 ~ 20500587 (-)
G121208 NA other upstream 227064 20626557 ~ 20627700 (-)
G121421 LOC106576258 other upstream 657105 21056598 ~ 21058849 (-)
G121533 LOC106583873 other upstream 889123 21288616 ~ 21346687 (-)

Expression


Co-expression Network