Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110509624 |
| gene name | ret1 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 20462682 ~ 20465854 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| ret1 | Contributes to RNA polymerase III activity. Involved in tRNA transcription by RNA polymerase III. Part of RNA polymerase III complex. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy 8 with or without oligodontia and-or hypogonadotropic hypogonadism. Orthologous to human POLR3B (RNA polymerase III subunit B). |
| description |
|---|
| proto-oncogene tyrosine-protein kinase receptor Ret |
| id | name | namespace |
|---|---|---|
| GO:0006810 | transport | biological_process |
| GO:0005215 | transporter activity | molecular_function |
| GO:0008289 | lipid binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036941353.1 | False | 1176 | mRNA | 0.44 | 4 | 20462689 | 20465854 |
| TU139863 | True | 883 | TUCP | 0.45 | 4 | 20462682 | 20465789 |
20,460,000
20,461,000
20,462,000
20,463,000
20,464,000
20,465,000
20,466,000
20,467,000
20,468,000
20,469,000
20,470,000
NC_048566.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110503575 | LOC106605669 | coding | downstream | 10133 | 20438795 ~ 20452556 (-) |
| LOC118936525 | LOC106605721 | coding | downstream | 41765 | 20413499 ~ 20420924 (-) |
| LOC110503568 | c1r/c1s | coding | downstream | 63196 | 20391977 ~ 20399493 (-) |
| tapbpl | LOC100136300 | coding | downstream | 85538 | 20372105 ~ 20377151 (-) |
| lag-3 | lag-3 | coding | downstream | 105691 | 20354114 ~ 20356998 (-) |
| LOC110509434 | NA | coding | upstream | 127 | 20465981 ~ 20504869 (-) |
| LOC110537414 | LOC106576265 | coding | upstream | 40369 | 20506223 ~ 20582957 (-) |
| LOC110537423 | LOC105029961 | coding | upstream | 131202 | 20597056 ~ 20602488 (-) |
| LOC110537462 | LOC106576526 | coding | upstream | 185380 | 20651234 ~ 20660987 (-) |
| LOC110537468 | LOC106605860 | coding | upstream | 197138 | 20662992 ~ 20665219 (-) |
| G121168 | NA | non-coding | downstream | 28310 | 20428856 ~ 20434379 (-) |
| G121167 | NA | non-coding | downstream | 28614 | 20428603 ~ 20434075 (-) |
| G121160 | LOC100194563 | non-coding | downstream | 98506 | 20362223 ~ 20364183 (-) |
| G121153 | NA | non-coding | downstream | 117959 | 20344495 ~ 20344730 (-) |
| G121152 | NA | non-coding | downstream | 142426 | 20319739 ~ 20320263 (-) |
| G121174 | NA | non-coding | upstream | 1298 | 20467152 ~ 20468133 (-) |
| G121175 | NA | non-coding | upstream | 3157 | 20469011 ~ 20470007 (-) |
| G121176 | NA | non-coding | upstream | 4254 | 20470108 ~ 20471953 (-) |
| G121186 | NA | non-coding | upstream | 26090 | 20491944 ~ 20528905 (-) |
| G121192 | NA | non-coding | upstream | 43532 | 20509386 ~ 20510757 (-) |
| G121046 | NA | other | downstream | 250322 | 20211068 ~ 20212367 (-) |
| LOC110537275 | grl1 | other | downstream | 534229 | 19924063 ~ 19928533 (-) |
| LOC118944062 | LOC106575151 | other | downstream | 767125 | 19692971 ~ 19695564 (-) |
| cacng6b | LOC106606119 | other | downstream | 974457 | 19484328 ~ 19499142 (-) |
| G119663 | NA | other | downstream | 1413659 | 19048307 ~ 19049030 (-) |
| G121188 | NA | other | upstream | 33042 | 20498896 ~ 20500587 (-) |
| G121208 | NA | other | upstream | 160703 | 20626557 ~ 20627700 (-) |
| G121421 | LOC106576258 | other | upstream | 590744 | 21056598 ~ 21058849 (-) |
| G121533 | LOC106583873 | other | upstream | 822762 | 21288616 ~ 21346687 (-) |
| G121738 | NA | other | upstream | 996839 | 21462693 ~ 21463030 (-) |
