LOC110537462 (LOC106576526)


Basic Information

Item Value
gene id LOC110537462
gene name LOC106576526
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20651234 ~ 20660987 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941433.1
AATGCCCAGAGAATTTTGTTCAATTTAATAGCGTCCCCAagtgacagagaaacagaggctGGAGATGGTCCACGAGATGATGAAAGAAAACCGAGACCTGCCactcatcaatcaacacatgcAGAAGACATTTGCTCTCCGACACCAAGAAATAGTTCAATCCAGTCCCACGGTAGAACATCTCAGAACACGCTGGCCAGCACTCTTCCTCGAAGCCCAGGTACATGCTGAGTTTCAGAGAATCACCAACCAGAGCCTGCAGCAGACGTTCTACTCTGCCTTGGACCACCACACGCCCCGCCTGCTGACCCTgttcagggaggaggaggggaagtcCACCACCCATGAAGGGAAGTTCTCAAGCATCCTGAGAGTGTACAACGAGCAGTGGGAGAACTCAGCAACCCTGGTATACTGGATGGAGTTGCCATTCTCTCAGTGGTGGGCCAGCACAATGAGGTGGTGGGTGGTATACCCATCAGACCGGCCCATGTATCCATTGTCCTTGAGGATAAGATCGTCATGACTAACTCCCGCTCCTGGCCAGACGCTCTCGTGGTTGTTTTTGGGTTACTCTACTCCCTCCATCTGAACTACCCCAAAGCCCTGGGCAGCACCTTTGAGTTCATGCAGAAAATCTTCCTGAATCTCGACGATGGAAAACTGAAGCCCAAGCGGCTAGCGCTGAAATATGAACTGTTGGCCTAATTCTGTAGTGATGAGATGGAATTTTACTTTGAGTGACCTCCTATATGCCGAGCGAGTGGTTTGAAAACAATGGTTATTTTTGTTTGgtttgcttttatatttttgtacgTTTTTTGTGCAAGTAATGGATTTGATATTGTATTTCAATTCACTTATAACCCTTTAATATGAAAAGAAGACACAGGTCAGTCAACACATTAACTTGCCACATACAGTCGATCTGCGACCCAGTTCTCTACCTTTGTTATACAGCTGCAGAAAACCCCCAAACGTTTTCTAGAAGATTTCACCTTTGCAGACATTCCGACTGGCACAAAATACATGTTGATAAGATGTTTATGAAAGTGTCTTTACCTGCTATTGTCTATCTTCTCTGGCAGTGTTGCGTGATCCTGGCCTTCTATCTGAATTCTAAATGCTCACCAAGACACAGGACTATGTCTTAACTGTTGTAACACACTGAGTATACGCTGAGTGTACATTATtgtgttgcacccccttttgcactcagaacagcctcaattcgtcaggcaTGGGCTCTACAAGATGTCaaagcgtttcacagggatgatggcccatgttgactccaatgtgtccaacagttgtgtcaagttggcgcGATGTCCTTTAGGTAATGGACTGTTCAGAGATGACGTCTGTGTGTGTTCCGTCTGACTCCTGTCCAGCTGAGGTTTCTCCACACTGCCGGCACAGCTCCATGTCAACTTGATGCAAACACTGGTATCTGTGAGACGGTTTCTCTGTCAACACAGCTCactggtttgtctgtctgtctcgttgGTCTGCCTGTCGCTGGTATGTGTGTCTGTTGCTTGTCTGGGAGGTAGTGTTGGTCGCCTTCACAGTTCTCTCAGACACaaaggtctctgtgtgtgtgtttttgtgtgtgcgcacatgcaaGTGAGTCTGTTCTTAATTACATGGAGCACCATGTCAGCATATTTCTCAGCTTGTGAATAGATGAGTGAGTTAATGAGTGAGGGTTTTATGTGTGTTTTCCTACGACTAAGGGAGTAGTTATTAGATTTCATTGTCATGCAGCCTGAGCCCTCCCCCTTTGACTGACACTGAGAATACTTCACCAGATTGGCAAAAACAAGAAACTATGAAACGCCTGTGACTCCAATTAGTATATAATCAAGGCAGACTGTCAGTCAGTCCATGGCTCTGTGATCACATAAGTAGTTCACTTACCGGTAGAACAGACGGCACCATTGACAGAAAGTCTTGCCTGATTGAACGCCGAGGGAAGCCTGGTACAGAAATGTCCATTTACTTAGAAATTACATGATTAAAATGGTAATTACACTAATTACACTAATAATTTGATTGGCGAAACTTCTGTGTTAGCCAAGCTGCAATGATGGACAGGCCATGTAAATGACATCTATTTATTCTATGCAACCTATTTCTACGTCTTTGACATTGTCCTTCTCACTCACCCTGGTGAAGGATGGCTCTAAGAATATCTCCCTGATGTGATGTCATCAGAATGGAATGTCAGGATCGTCCTGTAGATGCTGCAATACAGAATGCTGCCGACATACTTATCTAAGGTGACTTTAAACGCCACACAACCAATTTACCATGGAATATCTCCGCTCAACATGAGGGCAGGAGAAGGCTAATAGCACTTGTGACACGAATATACCTCTGTTTACTTCTTTACTACTAATGAACTCTTGTTGAATGCATGTTATTCCTATGGTTAATGCAGAGTACAGTAGCTGTTCTGAATGGCAACATGGCTGACTATACAGCGCTATAAACAGACTATAAGGCAAAGACCCACACTGTCAGTTCCTAACTGTAAATAGAGATCAAAGTAAAATAGTTTTATGTGAACAGTCAGACCGTAGCATGCTAACATAGTACGGTCCAGCTGCATATGCAATTACCATGTAAATACTGGATGGTTTTAACTTCACTTGGTATAAAGAGGGAATCGTAAGCCACACCATCACATGTACTGTATGAATAGGATGAAGTTGCCTCTTTGTGGTTGAAACATTATTAATACAAACTATAGGAGCATTTATTCTAAACAGCACAGAGGCATTTGTCACATTTAGCCTAGAACACATTCAGCCCTGAGCTTCTAACAGCATCGGTAAATCATAAGATTCCAGCTCCTCCTATCAGTTTCCTTCTTTCTTTTACAGTGTGGTCTGGAATGTTGGCTTTACAGGGATGGTGCTCACTGGTGCTACACAACTTTCATGTCTCACACTCATCCCATACATATGTCTCCTATTAGCTACACTcgcccagagagagggaggaaagggaaggagagaggggggggaagg
>XR_002475629.2
GTACAGAATTAGGCAGACCATGATTGATCGCATtctccagcacagtaggtgagGACATGCACTTTAAACGGTTGTTTTCGCGGACCGCCATGATATCATAGAAGAAAACTGTCGCATTCCACTCCAGCAGAGGGCGATAGTCAATCATTTGTGATGCCCTACACAGAGGGACATGCGCTTCTGTGTTTATATTCTGCAGAAGTGCATGCTAATTTTGCATGGaagaaaataaacaataaaaactaAAAGAGAGTTGAAGAGAGAATTTCTCAACCAGAAATTAATAGCGGCTGCTGAGGAGATATTTGGGGTCGTTGAAAAAACGATAACAGAGTACCAGCTAGACGTTTTCCATACGAAAGAGGAGAACGAACGTCTTCGTGGGCTGTTGATGTTGCACAAAGGAGTGTAAAGAGGAAGAGGATACCCACTGGATCAGTGAGGTTGAAGAACACATTCAAAAGCTGGAGTCTGATTCCAAAGAATATCCAGACCAAGTATCCACTTCTGAAGATTTCACATTCCAAATGGAGACAGAAGGGTCTGTAAATGAAGCCATCAAACTGAAAGTCATCCTCAACGACAACAGAATAGAGAAAGTGATTCTGCCCTCTCAACCTGACTCACTGAATGAGCTGATATCAACGCTCAAGGAGAAACTGCATCTGAAGTTTCATTTCAGTCTTCTTTATGAAGACCCTGATGTAAACAACGAGCTCTTCAACTTAGAGACCATTGAAGACTTGCCTTCTCCTAGGGCTACGGGAAAGTTTTGCGAATACCACGTGATACAGACCTCGGTTTAACCGGACTCTCAGCCACCGAGTTACAGGCCGCCCCACCAGAGCGGTTAGGAAGGTGGCCTGAGGTATTTGTCATACTCACTTTCTCAATGGAAGTTGAGTTTGCTCTGAGAGAGGGCTATTGTGCATATCTGAGACAGGAAACGGTGCTGAAAATAACGAAGGATCAAAAACACAACATTCTTGATAGGATGGCTTGGACAATCTTCAATTCCAAAGCGTACCCAAGTGACAGGCATTTTGGCAGCTGAGGCCCTTGTAACCAAGCACCCATGTTTGAAAGAGCCTGGCTCAAACGCAGGCTGTGATGGCTGGAAGAACAGCCTGAAATTCAAAACGGGAAACTACAGGCAGAAGTTACGCCATGTTGGGTTCCCAGAGGTTGCTGTGAACGGGGGGAGGAGGAGCAAGCATCGTCCTGACAATGAACAGCTCGAAGCAACATTAAACAAGCACGCCGGGCAGAAGGGAACTTCCTGCCCAACTTCCCTCAAGGAGAAGACGAGGCCAGCCTGGAGAAACAGAGACTGGAGATGGTCCACGAGATGACAAAAGAAAACTGAGACTTGCTGGGTCCCACAGTGGCACATTGTAAACAGGAAGAAGATACACACTGGATCAGTGAGGTTGAAGAATACATTGAAAGGCTGGAGTCTGATCCCAAAGACCCTGACCAAGTATCCACTTCTGAAGGTACATGCTGAGTTTCAGAGAATCACCAACCAGAGCCTGCAGCAGACGTTCTACTCTGCCTTGGACCACCACACGCCCCGCCTGCTGACCCTgttcagggaggaggaggggaagtcCACCACCCATGAAGGGAAGTTCTCAAGCATCCTGAGAGTGTACAACGAGCAGTGGGAGAACTCAGCAACCCTGGTATACTGGATGGAGTTGCCATTCTCTCAGTGGTGGGCCAGCACAATGAGGTGGTGGGTGGTATACCCATCAGACCGGCCCATGTATCCATTGTCCTTGAGGATAAGATCGTCATGACTAACTCCCGCTCCTGGCCAGACGCTCTCGTGGTTGTTTTTGGGTTACTCTACTCCCTCCATCTGAACTACCCCAAAGCCCTGGGCAGCACCTTTGAGTTCATGCAGAAAATCTTCCTGAATCTCGACGATGGAAAACTGAAGCCCAAGCGGCTAGCGCTGAAATATGAACTGTTGGCCTAATTCTGTAGTGATGAGATGGAATTTTACTTTGAGTGACCTCCTATATGCCGAGCGAGTGGTTTGAAAACAATGGTTATTTTTGTTTGgtttgcttttatatttttgtacgTTTTTTGTGCAAGTAATGGATTTGATATTGTATTTCAATTCACTTATAACCCTTTAATATGAAAAGAAGACACAGGTCAGTCAACACATTAACTTGCCACATACAGTCGATCTGCGACCCAGTTCTCTACCTTTGTTATACAGCTGCAGAAAACCCCCAAACGTTTTCTAGAAGATTTCACCTTTGCAGACATTCCGACTGGCACAAAATACATGTTGATAAGATGTTTATGAAAGTGTCTTTACCTGCTATTGTCTATCTTCTCTGGCAGTGTTGCGTGATCCTGGCCTTCTATCTGAATTCTAAATGCTCACCAAGACACAGGACTATGTCTTAACTGTTGTAACACACTGAGTATACGCTGAGTGTACATTATtgtgttgcacccccttttgcactcagaacagcctcaattcgtcaggcaTGGGCTCTACAAGATGTCaaagcgtttcacagggatgatggcccatgttgactccaatgtgtccaacagttgtgtcaagttggcgcGATGTCCTTTAGGTAATGGACTGTTCAGAGATGACGTCTGTGTGTGTTCCGTCTGACTCCTGTCCAGCTGAGGTTTCTCCACACTGCCGGCACAGCTCCATGTCAACTTGATGCAAACACTGGTATCTGTGAGACGGTTTCTCTGTCAACACAGCTCactggtttgtctgtctgtctcgttgGTCTGCCTGTCGCTGGTATGTGTGTCTGTTGCTTGTCTGGGAGGTAGTGTTGGTCGCCTTCACAGTTCTCTCAGACACaaaggtctctgtgtgtgtgtttttgtgtgtgcgcacatgcaaGTGAGTCTGTTCTTAATTACATGGAGCACCATGTCAGCATATTTCTCAGCTTGTGAATAGATGAGTGAGTTAATGAGTGAGGGTTTTATGTGTGTTTTCCTACGACTAAGGGAGTAGTTATTAGATTTCATTGTCATGCAGCCTGAGCCCTCCCCCTTTGACTGACACTGAGAATACTTCACCAGATTGGCAAAAACAAGAAACTATGAAACGCCTGTGACTCCAATTAGTATATAATCAAGGCAGACTGTCAGTCAGTCCATGGCTCTGTGATCACATAAGTAGTTCACTTACCGGTAGAACAGACGGCACCATTGACAGAAAGTCTTGCCTGATTGAACGCCGAGGGAAGCCTGGTACAGAAATGTCCATTTACTTAGAAATTACATGATTAAAATGGTAATTACACTAATTACACTAATAATTTGATTGGCGAAACTTCTGTGTTAGCCAAGCTGCAATGATGGACAGGCCATGTAAATGACATCTATTTATTCTATGCAACCTATTTCTACGTCTTTGACATTGTCCTTCTCACTCACCCTGGTGAAGGATGGCTCTAAGAATATCTCCCTGATGTGATGTCATCAGAATGGAATGTCAGGATCGTCCTGTAGATGCTGCAATACAGAATGCTGCCGACATACTTATCTAAGGTGACTTTAAACGCCACACAACCAATTTACCATGGAATATCTCCGCTCAACATGAGGGCAGGAGAAGGCTAATAGCACTTGTGACACGAATATACCTCTGTTTACTTCTTTACTACTAATGAACTCTTGTTGAATGCATGTTATTCCTATGGTTAATGCAGAGTACAGTAGCTGTTCTGAATGGCAACATGGCTGACTATACAGCGCTATAAACAGACTATAAGGCAAAGACCCACACTGTCAGTTCCTAACTGTAAATAGAGATCAAAGTAAAATAGTTTTATGTGAACAGTCAGACCGTAGCATGCTAACATAGTACGGTCCAGCTGCATATGCAATTACCATGTAAATACTGGATGGTTTTAACTTCACTTGGTATAAAGAGGGAATCGTAAGCCACACCATCACATGTACTGTATGAATAGGATGAAGTTGCCTCTTTGTGGTTGAAACATTATTAATACAAACTATAGGAGCATTTATTCTAAACAGCACAGAGGCATTTGTCACATTTAGCCTAGAACACATTCAGCCCTGAGCTTCTAACAGCATCGGTAAATCATAAGATTCCAGCTCCTCCTATCAGTTTCCTTCTTTCTTTTACAGTGTGGTCTGGAATGTTGGCTTTACAGGGATGGTGCTCACTGGTGCTACACAACTTTCATGTCTCACACTCATCCCATACATATGTCTCCTATTAGCTACACTcgcccagagagagggaggaaagggaaggagagaggggggggaagg
>XM_036941430.1
AGAATGCCCAGAGAATTTTGTTCAATTTAATAGCGTCCCCAagtgacagagaaacagaggctGGAGATGGTCCACGAGATGATGAAAGAAAACCGAGACCTGCCactcatcaatcaacacatgcAGAAGACATTTGCTCTCCGACACCAAGAAATAGTTCAATCCAGTCCCACGGTAGAACATCTCAGAACACGCTGGCCAGCACTCTTCCTCGAAGCCCAGGTACATGCTGAGTTTCAGAGAATCACCAACCAGAGCCTGCAGCAGACGTTCTACTCTGCCTTGGACCACCACACGCCCCGCCTGCTGACCCTgttcagggaggaggaggggaagtcCACCACCCATGAAGGGAAGTTCTCAAGCATCCTGAGAGTGTACAACGAGCAGGTCAGTGGGATTCACTTCATCAGGGATGGACAGTCTTGGTGTGGCTGCAGACTCTTGTTTCAACCAAGCAGTGACACACCTGGTTCACTTGATCAACTAATCTTCAACCAATACTTTGTTTACTGCTTGGTTGGAACAAAATCCTGTAGCCACACCTGCTTTTTGTGCATAAGATTGGCCACCCATGTGCTACATGGACATGTGCTTCAGCTATTAGCTGTGACTGGAACCAGATTAGATTACTCCTATGTTGCGGTTGACGAGCGCAACTTGCTGGATTATTTAAATGCTAAATGACAttgtgacattgtgacatcaccgTCATCACCGTGGCCCGTTCTGCAGTCCTGGCTGGTCTCCCTATGTTGTTACGTGAGGTTAGTTCTGCGAGGTACTCACCTGGTTTTACAGCCTGTACCATTATGAATGCattcttttctattgtgttttttaaact
>TU140013
AATTCTGTAGTGATGAGATGGAATTTTACTTTGAGTGACCTCCTATATGCCGATGTTGCGTGATCCTGGCCTTCTATCTGAATTCTAAATGCTCACCAAGACACAGGACTATGTCTTAACTGTTGTAACACACTGAGTATACGCTGAGTGTACATTATtgtgttgcacccccttttgcactcagaacagcctcaattcgtcaggcaTGGGCTCTACAAGATGTCaaagcgtttcacag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941433.1 False 3038 mRNA 0.44 3 20651234 20654961
XR_002475629.2 False 4314 mRNA 0.45 5 20651234 20660987
XM_036941430.1 False 847 mRNA 0.48 2 20653904 20654963
TU140013 True 238 lncRNA 0.43 2 20652999 20653565

Neighbor

gene id symbol gene type direction distance location
LOC110537423 LOC105029961 coding downstream 48746 20597056 ~ 20602488 (-)
LOC110537414 LOC106576265 coding downstream 68277 20506223 ~ 20582957 (-)
LOC110509434 NA coding downstream 146365 20465981 ~ 20504869 (-)
LOC110509624 ret1 coding downstream 185380 20462682 ~ 20465854 (-)
LOC110503575 LOC106605669 coding downstream 198678 20438795 ~ 20452556 (-)
LOC110537468 LOC106605860 coding upstream 2005 20662992 ~ 20665219 (-)
LOC110537475 LOC106605848 coding upstream 7581 20668568 ~ 20673278 (-)
LOC110537483 LOC106605857 coding upstream 12789 20673776 ~ 20688855 (-)
LOC110509793 LOC106576373 coding upstream 403080 21064067 ~ 21074205 (-)
LOC110537544 LOC106605712 coding upstream 661026 21322013 ~ 21348882 (-)
G121238 NA non-coding downstream 7412 20641755 ~ 20643822 (-)
G121219 NA non-coding downstream 22753 20585748 ~ 20628481 (-)
G121203 NA non-coding downstream 77283 20568600 ~ 20573951 (-)
G121197 NA non-coding downstream 102024 20532867 ~ 20549210 (-)
G121186 NA non-coding downstream 122329 20491944 ~ 20528905 (-)
G121209 NA non-coding upstream 33382 20694369 ~ 20695390 (-)
G121286 NA non-coding upstream 136407 20797394 ~ 20798054 (-)
G121310 NA non-coding upstream 202367 20863354 ~ 20863912 (-)
G121312 NA non-coding upstream 206306 20867293 ~ 20867528 (-)
G121314 NA non-coding upstream 209614 20870601 ~ 20870931 (-)
G121208 NA other downstream 23534 20626557 ~ 20627700 (-)
G121188 NA other downstream 150647 20498896 ~ 20500587 (-)
G121046 NA other downstream 438867 20211068 ~ 20212367 (-)
LOC110537275 grl1 other downstream 722774 19924063 ~ 19928533 (-)
G121421 LOC106576258 other upstream 395611 21056598 ~ 21058849 (-)
G121533 LOC106583873 other upstream 627629 21288616 ~ 21346687 (-)
G121738 NA other upstream 801706 21462693 ~ 21463030 (-)
G121756 NA other upstream 829280 21490267 ~ 21547037 (-)
G122733 LOC106592382 other upstream 1135520 21796507 ~ 21812432 (-)

Expression


Co-expression Network