LOC110537475 (LOC106605848)


Basic Information

Item Value
gene id LOC110537475
gene name LOC106605848
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20668568 ~ 20673278 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623547.2
AGGCGACGACCttgggtataaaaaaaaaataagccCATGTAAGCGCATTGGGCTTGTTTTGGACAGAGTTAAAGGAaagtgaaacctctcgcttcgcctcagCGCTCTTTATATTTTCGACTTGGTAGCTATCTAGCCAACTTTCCTTCTCTACAAATGTCTAAAATAGAGTTATTGAGAATGTTTCTAAACCAGAGATTGATAGCGGCAGCTGATGAGATATTTGGTGTCGTTGAAGAAACCCTAGCAAGGTACCAGGAAGAGGTTTCTCGCACAAGGGAGGAGAACAGTCGTCTACGGCTCACGCTCGATATCCGTACTAAACCAGATATCAAGTTACATAGACAAGatctCCAGCATCTAACTGTCACCGTGTCTGATGAGGTGGTTTCCCCTGAGCAGCAGGAGTGGAGCCCCAGTCTGGGGCAGAAGGACCCAGAACCCACACGGATGAAAGATGAACAGAATGAACCAAGGACCAGTCAGGAGGATGAGAATCATTTCAATGAGTTTATCAATTCTTACGGCTGTGTATCAAGTGACTATTATCAGGACCCAACTCAGCCCTCACATGGAGAGAGATACTCTCTACCCAGCACCTCAACTGAACAGATCAAAACAGAACCTTATGTAGAAGACTATGGTGTATCAGAACCAACCAGAGAGTCTCAGCCCTTCTCTGCAGTAGATACGGAGTGTTCTGCAGCTCAGAGTGAAAACAGAGGACATATTGACATGATGGAGTGTGGAGGATCTCTGTCAGGTCTAATGTTAAAGCCTCTCAAATCAAAGAGAACAAAGACAGTAAAAGGACAAAGTTCTCATAGTGTTAAGGACAGGAAATTGAACCATCTAAAATCACACTCGAGACCCAGTGTAAGCTGGGATGCTGCTCCTAGTTGTAAGGTATGTGGAAAGCAATTTGACTCCATGGCGTCTTTATTAAATCATGTGCAAACGCACACACAGGATAAAGAACATCTTTGTGGTGTGTGTGGAAAATTCTGTCAGTCTACAGAAAGTATGATGGATCACCTACAAACTCACATCGGAGCAAAGTGTTGTCATATTTGTGGTAAATATTTTGCTTGGGATGCTTTCCTGAAAAGGCATTTGAGGagtcatacaggggagaagccgtTTCACTGTCATGATTGTGGCAAAGGATTCAGTCAGAGTGGAAACCTGGCGGTGCATATGAAGAGCCACTCTGGGGAGAAACCACATCGCTGCCCTGTTTGTGGGAAATGTTTCAGCAGAAACCCTGATCTGACAGTCCACATGAGGACTCATACAGGGGTGAAACCATATAAGTGCCAGTATTGTGGCCAAGGATTCAAGCAGAATTATCACCGGAAACTACACATGAAGATCCACATGGGAAAAACCATATCATTGCCATCTTTGTGACATGTATTTCAGCACTAGCACCCAGTCAACCGGGCTTGAGATTTCACATGGAAGAGAAGGTGTCACTGCCATGACTGGCAGAGGCTTTGCATAGACTGGAAGTTTGGGAGGACATATAATGACAATGCACAGAATACTTTAGTGTAGAAAATACTGACTGTAGACCTGGTTTGTGATACATGTTTCACTCAGCCGCTTTATTGAGGAAATATGTTACTCGCAGTGACTATTAATGTGGTTGTTTTACCTGTTTTGAATACactgactgtaagttgctctgggtaAGACAGTGCAATtatgtttcactgttagtctacacctgttgcttACAAAGCGTGTCACAAaaagattgatttgatttgattgctgcTAAATGCTTCAAATGGATGAAGTCCCCTAGAAGGTCTGAGAACATTCACAAGAGGGAGAAACCATAATAACAACCTGATGAAAATCCTCCTGACAACATGGCAGTTGTCCCCTGTGTAGGGAGAGTGTTTCAGACAGTACAAGAGGTGCATTAAAATATGTAGTTCTCTGAATCGACTGGCTTTATTTctatgaaatacagtgccttcagaaagtattcataccccttgacttattccacattttgttctgttacagcctgTATTCAAAGTTGATTCATatttttcctcacccatctacacacaataccccataataacgaagtga

Function

NR:

description
zinc finger protein 260-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623547.2 True 2106 mRNA 0.43 2 20668568 20673278

Neighbor

gene id symbol gene type direction distance location
LOC110537468 LOC106605860 coding downstream 3349 20662992 ~ 20665219 (-)
LOC110537462 LOC106576526 coding downstream 7581 20651234 ~ 20660987 (-)
LOC110537423 LOC105029961 coding downstream 66080 20597056 ~ 20602488 (-)
LOC110537414 LOC106576265 coding downstream 85611 20506223 ~ 20582957 (-)
LOC110509434 NA coding downstream 163699 20465981 ~ 20504869 (-)
LOC110537483 LOC106605857 coding upstream 498 20673776 ~ 20688855 (-)
LOC110509793 LOC106576373 coding upstream 390789 21064067 ~ 21074205 (-)
LOC110537544 LOC106605712 coding upstream 648735 21322013 ~ 21348882 (-)
LOC110534425 LOC106605569 coding upstream 703148 21376426 ~ 21379023 (-)
LOC110537611 NA coding upstream 880240 21553518 ~ 21555867 (-)
G121238 NA non-coding downstream 24746 20641755 ~ 20643822 (-)
G121219 NA non-coding downstream 40087 20585748 ~ 20628481 (-)
G121203 NA non-coding downstream 94617 20568600 ~ 20573951 (-)
G121197 NA non-coding downstream 119358 20532867 ~ 20549210 (-)
G121209 NA non-coding upstream 21091 20694369 ~ 20695390 (-)
G121286 NA non-coding upstream 124116 20797394 ~ 20798054 (-)
G121310 NA non-coding upstream 190076 20863354 ~ 20863912 (-)
G121312 NA non-coding upstream 194015 20867293 ~ 20867528 (-)
G121314 NA non-coding upstream 197323 20870601 ~ 20870931 (-)
G121208 NA other downstream 40868 20626557 ~ 20627700 (-)
G121188 NA other downstream 167981 20498896 ~ 20500587 (-)
LOC110509624 ret1 other downstream 202779 20462682 ~ 20465854 (-)
G121046 NA other downstream 456201 20211068 ~ 20212367 (-)
LOC110537275 grl1 other downstream 740108 19924063 ~ 19928533 (-)
G121421 LOC106576258 other upstream 383320 21056598 ~ 21058849 (-)
G121533 LOC106583873 other upstream 615338 21288616 ~ 21346687 (-)
G121738 NA other upstream 789415 21462693 ~ 21463030 (-)
G121756 NA other upstream 816989 21490267 ~ 21547037 (-)
G122733 LOC106592382 other upstream 1123229 21796507 ~ 21812432 (-)

Expression


Co-expression Network