LOC110537483 (LOC106605857)


Basic Information

Item Value
gene id LOC110537483
gene name LOC106605857
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20673776 ~ 20688855 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623558.2
GGAACGCCCTCCTTTGTTAACCGCATACAGTGTCTACGCTATGTTGTTGTAAATGTTCCTGTCATTATCCGTTAGCAAGCTGACacaacttttttcctcaaaaaaatGTCTAATATACAGTTATTGAGAGTGTTTCTCAGCCAGAGATTGACAATGGCAGCTGAGGAGATATTCGGCGTCATTGAAGAAACGATAGCAGAGTACCAGGAAGAGAACAGCCGTCTGCGTAGCATGCTCGATGTAGTTATTAAACCAGATATACTATTACACAGAATAGACATCCAACAGTCCACCCACCACCCTGTATCTGAAAAGGAGGTTCTCCCTGAGCAGCAACACTGTGAGCAGGAGTGGAGCCCCAGGCTGGGGCAGGAAGACCCACATTACATACAGATAAAAGAGGAACCGGAGGAACTAGAGTCATCTTTGAAAAATGACTACAACCACCAGGACCTGACTCAGTCCTCACTTCTTTATGAAACCCAAAGTGAAGACTACGAAGAGACGTACTGTCTTCCCAGCACCTCAACTGCACAGAGGAACTACTCCCTACCCAGCACCTTAACTGAACAGAACATGATACAGATCAAATCAGAACTTGATGCAGAAGACAATGGAGTATCAGAACCATCCCGTGAGCCTCAGCCCCTATTTGCAGAAAATCTAGAGTCTTCTGCAGCTCAGAGTAAAAACATGAAATGTGTCAAAGGGGTAGAGAGTAGACCTCTGTCAGGTTCAAAGCCACTTAAACCCAAGAGATCACCATCAAAGAGATTACAGACAGTAAGAAAACAAAGTGCCTATATCCACTGTAAATTTTGTGGAATGTATTTCTCTTACTTAGCTTCTTTAGTGAATCATGCAAGAAAGCATGCACAGGACAAAGAATGTCTATGTGGTGTGTGTGGAATACACTTAGAGTCCACAGAAAGTATGTTAGATCATCTAGAAACCCACGTTGGAGCTAGAGTTTGTCATGTTTGTGGTACATTTTTCCCTGGGAGTGCTGAGCTGAATGATCATATGAAGGTTCACCCAGGGGAGAAATCGTTTCGCTGTCCTGATTGTGGCAAGTGTTTCAGAAAAAATCCAGATCTCACAGCGCACAAGAGGATTCATACAGGGGAGAGACCGTACCGCTGCCAGTTTTGTGGCAAAGGATTCAGTCAGAGTGGAAACCTGGCTGTGCATATGAAGAGCCACTCTGGGGAGAAACCGCATTGCTGCCCTGTTTGTGGGAAATGTTTCAGCAGTAAATCTtatatgaacacacacatgaaGATTCACACAGGGGAGAGGCCATTTTGCTGTCGTGTATGCGGAAAATGTTTCATAAGAAACCCTGATCTGACAGTCCACATGAGGACTCATACAGGGGTGAAACCATATAAGTGCCAGTATTGTGGCCAAGGATTCAAGCAGAATTATCACCGGAAACTACACATGAAGATCCACATGGGAAAAACCATATCATTGCCATCTTTGTGACATGTATTTCAGCACTAGCACCCAGTCAACCGGGCTTGAGATTTCACATGGAAGAGAAGGTGTCACTGCCATGACTGGCAGAGGCTTTGCATAGACTGGAAGTTTGGGAGGACATATAATGACAATGCACAGAATACTTTAGTGTAGAAAATACTGACTGTAGACCTGGTTTGTGATACATGTTTCACTCAGCCGCTTTATTGAGGAAATATGTTACTCGCAGTGACTATTAATGTGGTTGTTTTACCTGTTTTGAAATCACTAATTGTAAGTTGCTCTGGGTAAGAGTGTcaactaaatgaccaaaatgtaaatgcagGAAGTCCAATTGACACAGGACAGAATCCATATAATTGTTTTATGAAAAACATACATAATGCAATGATTGCTGCTAAATGCTTAAAATGGATGAACTCCCCTAGAAGATACGAGAAGAACATTCACAAGAGGGAGAAAACATAATGACAACCCGACAAAAAACCTCATGACAACGTGACAGTCGTCCCGTGTAGGCAGAGTCTTTCAGACAATACAAGAAGTGCATTAAAACATCTAATTCCCTAAA
>XM_036941455.1
ACTGCGAacatagagaaaggagagaaagagagagaaagagacaagcaCAGTTGGATTGGATATCTGTCAATTTGGTTGTTTCTCAAGATCAAGCAGGCAAGCTTAACACTGGTTCAAAGGCAATCACTTGGAGTTTGAATTGTTTTTGATGTCTCCAAGTCCACTGTTTAACATTACGGCTTACGTGGACTGTTTTACGTCGCTTCTAAATCACATCCAACAGTCCACCCACCACCCTGTATCTGAAAAGGAGGTTCTCCCTGAGCAGCAACACTGTGAGCAGGAGTGGAGCCCCAGGCTGGGGCAGGAAGACCCACATTACATACAGATAAAAGAGGAACCGGAGGAACTAGAGTCATCTTTGAAAAATGACTACAACCACCAGGACCTGACTCAGTCCTCACTTCTTTATGAAACCCAAAGTGAAGACTACGAAGAGACGTACTGTCTTCCCAGCACCTCAACTGCACAGAGGAACTACTCCCTACCCAGCACCTTAACTGAACAGAACATGATACAGATCAAATCAGAACTTGATGCAGAAGACAATGGAGTATCAGAACCATCCCGTGAGCCTCAGCCCCTATTTGCAGAAAATCTAGAGTCTTCTGCAGCTCAGAGTAAAAACATGAAATGTGTCAAAGGGGTAGAGAGTAGACCTCTGTCAGGTTCAAAGCCACTTAAACCCAAGAGATCACCATCAAAGAGATTACAGACAGTAAGAAAACAAAGTGCCTATATCCACTGTAAATTTTGTGGAATGTATTTCTCTTACTTAGCTTCTTTAGTGAATCATGCAAGAAAGCATGCACAGGACAAAGAATGTCTATGTGGTGTGTGTGGAATACACTTAGAGTCCACAGAAAGTATGTTAGATCATCTAGAAACCCACGTTGGAGCTAGAGTTTGTCATGTTTGTGGTACATTTTTCCCTGGGAGTGCTGAGCTGAATGATCATATGAAGGTTCACCCAGGGGAGAAATCGTTTCGCTGTCCTGATTGTGGCAAGTGTTTCAGAAAAAATCCAGATCTCACAGCGCACAAGAGGATTCATACAGGGGAGAGACCGTACCGCTGCCAGTTTTGTGGCAAAGGATTCAGTCAGAGTGGAAACCTGGCTGTGCATATGAAGAGCCACTCTGGGGAGAAACCGCATTGCTGCCCTGTTTGTGGGAAATGTTTCAGCAGTAAATCTtatatgaacacacacatgaaGATTCACACAGGGGAGAGGCCATTTTGCTGTCGTGTATGCGGAAAATGTTTCATAAGAAACCCTGATCTGACAGTCCACATGAGGACTCATACAGGGGTGAAACCATATAAGTGCCAGTATTGTGGCCAAGGATTCAAGCAGAATTATCACCGGAAACTACACATGAAGATCCACATGGGAAAAACCATATCATTGCCATCTTTGTGACATGTATTTCAGCACTAGCACCCAGTCAACCGGGCTTGAGATTTCACATGGAAGAGAAGGTGTCACTGCCATGACTGGCAGAGGCTTTGCATAGACTGGAAGTTTGGGAGGACATATAATGACAATGCACAGAATACTTTAGTGTAGAAAATACTGACTGTAGACCTGGTTTGTGATACATGTTTCACTCAGCCGCTTTATTGAGGAAATATGTTACTCGCAGTGACTATTAATGTGGTTGTTTTACCTGTTTTGAAATCACTAATTGTAAGTTGCTCTGGGTAAGAGTGTcaactaaatgaccaaaatgtaaatgcagGAAGTCCAATTGACACAGGACAGAATCCATATAATTGTTTTATGAAAAACATACATAATGCAATGATTGCTGCTAAATGCTTAAAATGGATGAACTCCCCTAGAAGATACGAGAAGAACATTCACAAGAGGGAGAAAACATAATGACAACCCGACAAAAAACCTCATGACAACGTGACAGTCGTCCCGTGTAGGCAGAGTCTTTCAGACAATACAAGAAGTGCATTAAAACATCTAATTCCCTAAA

Function

NR:

description
zinc finger protein OZF-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623558.2 False 2053 mRNA 0.43 2 20673776 20676032
XM_036941455.1 True 1988 mRNA 0.43 2 20673776 20688855

Neighbor

gene id symbol gene type direction distance location
LOC110537475 LOC106605848 coding downstream 498 20668568 ~ 20673278 (-)
LOC110537468 LOC106605860 coding downstream 8557 20662992 ~ 20665219 (-)
LOC110537462 LOC106576526 coding downstream 12789 20651234 ~ 20660987 (-)
LOC110537423 LOC105029961 coding downstream 71288 20597056 ~ 20602488 (-)
LOC110537414 LOC106576265 coding downstream 90819 20506223 ~ 20582957 (-)
LOC110509793 LOC106576373 coding upstream 375212 21064067 ~ 21074205 (-)
LOC110537544 LOC106605712 coding upstream 633158 21322013 ~ 21348882 (-)
LOC110534425 LOC106605569 coding upstream 687571 21376426 ~ 21379023 (-)
LOC110537611 NA coding upstream 864663 21553518 ~ 21555867 (-)
LOC118938339 LOC106605559 coding upstream 889294 21578149 ~ 21586856 (-)
G121238 NA non-coding downstream 29954 20641755 ~ 20643822 (-)
G121219 NA non-coding downstream 45295 20585748 ~ 20628481 (-)
G121203 NA non-coding downstream 99825 20568600 ~ 20573951 (-)
G121197 NA non-coding downstream 124566 20532867 ~ 20549210 (-)
G121209 NA non-coding upstream 5514 20694369 ~ 20695390 (-)
G121286 NA non-coding upstream 108539 20797394 ~ 20798054 (-)
G121310 NA non-coding upstream 174499 20863354 ~ 20863912 (-)
G121312 NA non-coding upstream 178438 20867293 ~ 20867528 (-)
G121314 NA non-coding upstream 181746 20870601 ~ 20870931 (-)
G121208 NA other downstream 46076 20626557 ~ 20627700 (-)
G121188 NA other downstream 173189 20498896 ~ 20500587 (-)
LOC110509624 ret1 other downstream 207987 20462682 ~ 20465854 (-)
G121046 NA other downstream 461409 20211068 ~ 20212367 (-)
LOC110537275 grl1 other downstream 745316 19924063 ~ 19928533 (-)
G121421 LOC106576258 other upstream 367743 21056598 ~ 21058849 (-)
G121533 LOC106583873 other upstream 599761 21288616 ~ 21346687 (-)
G121738 NA other upstream 773838 21462693 ~ 21463030 (-)
G121756 NA other upstream 801412 21490267 ~ 21547037 (-)
G122733 LOC106592382 other upstream 1107652 21796507 ~ 21812432 (-)

Expression


Co-expression Network