LOC110509793 (LOC106576373)


Basic Information

Item Value
gene id LOC110509793
gene name LOC106576373
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21064067 ~ 21074205 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590907.2
CGCTTGATGACTGACAGGGAATGTATCCAATCACTTCCTTCCTAAGTCACAAGGCCAGAGCGCAAGGCAGCAGAGCGTGCCGACAACAGGGGGATGATCCGAGGACAAACGATGTTTTTCTTGCACCGAAATGTTTCTCTGCCAGACGATTCACGATTTGAAATGCGTACTGTCAAATCAGTGCATTAATTCACTTATAGCCGGAACGGAGAGTGCATTGTTGCTTCTGCGGAGCTTTGTGACTACCTCACGAGGGATTGTCCAACGACAGTAGATGAGAGGCTCCCTCCCTGTTGTCCTGACATCACAGAACATCATAGTGAGAGACCTGAGGAAAGAGGCTAGCTACTTTACAAATCATTGTTACTGGTTCAAGCCCTAAAACTCACAACACACTGTTTGCTCACTAACAGACATCAGTCTTCAGTTCAACAATCGAGGCACACTTGTATCAAGAtcgtaacacagagctgtaactCAGACCAGGACAGGAGCCTTTTTATCATTCTTTGAATTGTGCTGACCAACACACACGGTCCTAAAAAACCGCCTTGCAGTAGTCATGGATGACCAGCAGGAGGACCCAGAGGGCATGTACGACGTGCAGCACCAGTACATGTGCAGCGAGTGCCACCAGCTCTTCAACACCCTAGAAGAAGTGCTGATGCACCAGCAGATCCACACAGggcaggagggagaagagggggaggccATGGCCATCCAGGGCATCTCAGAGTACGGGGACAGCCAGTATCAGTGCCTGGAGTGTGGTGCCCTCCTCAGGAACCCAGATGAACTGCTACTGCACCAGGAGCTGCAcatgagagaggcagggttggaGACAGAGGACcatgaactgtgtgagGTGTTAGAGACAGACGAGGCAGGGACAGAGGGCCAGGTGTCGGGGCCTGTCCAGTACCAGTGTCTAGACTGCCTGGCCCTGTTTGACTCTCCAGAGGTGTGGCTGGCCCACAGACAGACCCACAGCAAGAGCAGCACACACAGTGCCACAGAGACTgAGTATGTGTTGCAGCCCGATGGTACTGTGACACCCTTGGTCAGTGTTCAGAACTTTGTCTTGAGTGAACAACAAGCTGGGGAGATCTTAGCACAGGTCCTggcccaacaacaacaacatcagtcTGCCCCCCAGCCCTCGACCCCCTCCCGGGCCACCTTCCCACCCCCCGTCTCCCCCCTTCCCGGCTCGGCCACCATGCGTCTCCAGATCTGCAGTGCCCAGGCCCTGGCCGATGGATCCAGTACCCCCGGGCTACGGCGCGCCAAGCTGCTGCCCCCTCTGCTCACTCCTCTAGGGGTGGGCTCGGTAGGAAAGCTAGGGGTTCCAGAGAACGGCCTCCAGAGACTGGAGGTGGCGCTGTCTGCTGTCCGGGAGGAGAAAGAGCAGCAGGGGGAGGTGGTGATCTTCCACCCCTATGAGTGCTCCGAGTGTGCCCTCCTCTTCCAGACCCCAGAGGACTTCCTGCAACACCAGGGGGAGCACTTCCTGGCCCAGGAGAAGGAGAGTGGTGAGGACGGGGTGATGATGGGATacgaggaggacagagggagggaggaggagagagaggaggagaatgggGGGAGGGtggcagaggagagggggaagggaacagggagaCGCGCCCTGGCTAAAAGATCTAGAAACACACCCCTATGCCTGCACTGCAGCCAATGCCAGCGTACCTTCACATCAGCCAATCGGCTGGCGGCACACAGGCGCGTGCACGAGCATGGCACATACGAGTGCCGGGAGTGCGACAAGGTGTTTAAGAAGGCGATGTCACTGCAGACACACATGCGCTCTCACTCCGGGGAGGCTCGGTATCTGTGTGTGGACTGTGGTCACGGCTTCAACACAGAGATGACCCTCATCATACACAGGAAGTCTCACACAGCAGAGCCGCTCCACAGGTGTGAGCACTGTGCCAAGACCTTCACCAATATGACCAAGTTCCTGTACCACCGTAGAACACACACCACCAAAGCAGCCACCACTACACCTACCCCCGTCGTCCTGGTCCCAGCGGCCCCCAGGAGGATGTCCCTGTCAGCCCTGTCCATCCTTCAGAGAGCCCGGGCcctgagggagaggggtgagggcaGCCCCATGGAGGGGGACGAGGAGAACCTGATGGCCCCCCTTACTGAGGCTGAGATGGAGATAGGCGAGTCGGGGGAGGACACTGCCTCCAGCTCCCTGAACAGggcagagggaggaaaggagaacgGGGTGGATGTGGAGGGGACACCAGGGGGCAGTGGAGAGTCCCAACCGGGAGAACATACTGCTGATCCTGGTTCCTCTACTGACCCTAACCCCTCTGGTCCAGCTGGCCCCCGGGGAGCGTTCCCCTGCCCCTCCTGCCCTGAAGCTTTCCCCTCCCTGCTCCGCTTGGTCAAACACCGCCATACGGCCCACGTCTCCGAGCGACACTTCAAGTGCTCCGTGTGCACCAAGACCTTCAAGAAGCAGATGCACCTACGCAACCACCTGCGCACACACACCGGCGAGCGGCCCTTCCAGTGCTCAGACTGCGGAAAAACCTTCTCGTCCCTGGCCAACCTGTCTCGCCACAACCTCACGCACTCTGGCGTGCGCCCCTACCGCTGCGACATCTGCCACCGGACATTCACCCAGTCATCCAACCTCCGGCAGCACCGCCTACTCCATGCCAACCTCCCTCCCTGGCCCTGCCCGGACTGCCCCGCCACCTTCGTACGGCCGGCCAAGCTAGCCGCCCACCGCTACACTGTTCACCCGGGGGCCCCGGCCCCGTTCTCCTGCCCCCAATGCCAGGCTGGCTTCCTGCACAGGAGGAAGAGAGACCACCACTGTCAGGAGGTCCACCCCACTGAGGcccaggcagacagagagagtgggttAGAGAGCCAGCCCCAAGTGTACCCTGACGGGGAGCCCCTCTCAGAGCCCTCCACCTCAGAAGACACCGGGACCACCAGCATCATGAGAGGGGGCCTGGACTGCACTGTGTGTGGGAAGAAGCTCAACTCTGCAGCCAACTGGCGTCTGCATCAGCTGAGCCACGGCCTGGTTCCTGGTCGGTCCTGTGGTGGTGCAGTGGCCAGGGGTAAATCCCACCAGTGCCTAACCTGCGGTAAGCTGTTTGTCTCCTCCTCTGGCGTGACCTTGCATCAGCGCATCCACACAGGAGAGCGCCCCTTCCCCTGCAACCTGTGTGGCAAGCGCTTCCGTCAGAACACGCACCTGCGAGAGcacctgcgcacacacacaggggagcgGCCGTTCCGCTGCGAAATATGTGACAAGGGCTTTGTCCAGAGCATGCACCTGGCGGAGCACCGGCGGACGCACACGGGGGAGCGCCCCCACGCCTGTCTGGTGTGCGGCAAGGCCTTCAAGTCCTTCTCCAACCTGCGGAACCACAGGAAGACCCACGCACGCCAGCAGAGGCAGGAGGAGGCGGCCGCAGCACAGGTTGCCATGGAGACCAGCGCCGCCGTGGCGCTAGTGGAGGCATCCCAGGTGGAACTGGCCAATGGGCAGCCTCAGCTGTTCCACATACAGACGTCGACCCAACAGCAGACTCAGGGTACTCCCACCATCATGTGTAATGAGTTTGGGGAGACCATCGCCATCATAGAGACCAGTGAGGGAGGAACCCTACCCCTGGCTGAGGCTATAGAGATCTACCACACAGCCCTGGAGAGCAGTCTGAGGATGGACTCCATCTCTGTAGACAGTCTACAGCTCATCTAAAGGCCAGACAGAGACAACTCAGAACCATGACCGGACCATCAGATAACCCTCACACGACGATCTAGATGTTCTGAGGGTCAAAGAGACACGACTCGGAACTATCACAGAACTGTCATAGAACCATCAAACAAGCCTCAAATATGTATCTACAGCTACCGAGAGCCAGTGAGAGGCTCAACTATTGGAGAACCATGACATAACTACCTGTGTGGGCTGTGGGAGTGTACTGACTCTTGACTGGCAGAGAGCATGTTTTACTGACTGTTATCCTATTGGGGTGAATGTATGGGGAGCAGTAGAAGATTAAACTGTGATCTAGTGAACTACAGCAGTGTAGGAACACTGGTCTGGTTGTCATTGTTGAGTACAAAAATGATTGTCTAAAATTGCAGCAGGCAGGACAACAGTAGGTGTTCATTCACTCCTCCAGACCAAATGTGTTACGATCTCATGTTCAGAAAGACAAGACAGAGCCGGTCAGTGGTGGTGGAGAGGTAGTGACAGACGTGAATCGAGGGCCATTTCCTGTGTTTGTCATGTTCTTGACTGCCCATGGATGTTCATTCAGTGCTTGTCTGTAATATGTGATTTTTACTTTGAAAACAATGACTGTTTCTCTTTTTGCTGTAAATAGATAAATGAATGATTAAATGATATTTGATAATA

Function

NR:

description
zinc finger protein 574-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590907.2 True 4429 mRNA 0.57 8 21064067 21074205

Neighbor

gene id symbol gene type direction distance location
LOC110537483 LOC106605857 coding downstream 375212 20673776 ~ 20688855 (-)
LOC110537475 LOC106605848 coding downstream 390789 20668568 ~ 20673278 (-)
LOC110537468 LOC106605860 coding downstream 398848 20662992 ~ 20665219 (-)
LOC110537462 LOC106576526 coding downstream 403080 20651234 ~ 20660987 (-)
LOC110537423 LOC105029961 coding downstream 461579 20597056 ~ 20602488 (-)
LOC110537544 LOC106605712 coding upstream 247808 21322013 ~ 21348882 (-)
LOC110534425 LOC106605569 coding upstream 302221 21376426 ~ 21379023 (-)
LOC110537611 NA coding upstream 479313 21553518 ~ 21555867 (-)
LOC118938339 LOC106605559 coding upstream 503944 21578149 ~ 21586856 (-)
LOC110534443 LOC106605563 coding upstream 512773 21586978 ~ 21594470 (-)
G121402 NA non-coding downstream 27721 21034039 ~ 21036346 (-)
G121391 LOC106576258 non-coding downstream 46512 21016522 ~ 21017555 (-)
G121386 NA non-coding downstream 55767 21007525 ~ 21008300 (-)
G121373 NA non-coding downstream 73959 20989661 ~ 20990108 (-)
G121378 NA non-coding downstream 76789 20986996 ~ 20987278 (-)
G121437 NA non-coding upstream 10174 21084379 ~ 21089156 (-)
G121456 NA non-coding upstream 49096 21123301 ~ 21123516 (-)
G121457 NA non-coding upstream 51862 21126067 ~ 21126526 (-)
G121462 NA non-coding upstream 63434 21137639 ~ 21137875 (-)
G121467 NA non-coding upstream 74127 21148332 ~ 21148671 (-)
G121421 LOC106576258 other downstream 5218 21056598 ~ 21058849 (-)
G121208 NA other downstream 436367 20626557 ~ 20627700 (-)
G121188 NA other downstream 563480 20498896 ~ 20500587 (-)
LOC110509624 ret1 other downstream 598278 20462682 ~ 20465854 (-)
G121046 NA other downstream 851700 20211068 ~ 20212367 (-)
G121533 LOC106583873 other upstream 214411 21288616 ~ 21346687 (-)
G121738 NA other upstream 388488 21462693 ~ 21463030 (-)
G121756 NA other upstream 416062 21490267 ~ 21547037 (-)
G122733 LOC106592382 other upstream 722302 21796507 ~ 21812432 (-)
G122761 LOC106578847 other upstream 777228 21851433 ~ 21856413 (-)

Expression


Co-expression Network