LOC110509817 (LOC106576382)


Basic Information

Item Value
gene id LOC110509817
gene name LOC106576382
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21075240 ~ 21103699 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941570.1
TAATGGATACACCCCAGTTGGATCTACCATCAAAACTTCGTTACCCATGAAGCAGTGCTATCAGCCAGCGCGTTGCTGTGCGTCAAGTCCAACCACTGTGCCAAGCGAAGAAGAAAGGGGGAGACGTACAAGCTAGCTAAAACGATATGCTACCAATGCAGTTAAATTTGTAACGACTACTTTAGAAAGGATAGGTCAACTCTGTGCCTGCTTGGCTTTAAATCGCAACAGACTTTTCCCCTGCCCCGGCTTTAGCGCACATAGATATGAGCGGCAGCGGGCGGCCCAGGACCAGCTCGTTTGCTGAGCCTCCAGGGGCTCCCGGAGCCGTTTCAGCCGCCGCCGGATCGTCTGTTACCGGAGGGATTTCTGCAGGAAAATCTGGGGCTTCACAGGCCACAGGGAGCAGCTCGACTGGCTTCGGAAATTTGAAACTAGCCCGAGACAGTGGCAAGGTGACGACTGTGGTGGCCACACCAGGCCAGGGTCCAGACCGCCCACAGGAGGTGTCCTACACAGACATCAAGGTGATCGGGAATGGTTCCTTCGGCGTGGTGTACCAGGCCCGCCTCATTGACAGCCAGGAGATGGTTGCCATCAAGAAGGTTCTGCAGGATAAGAGGTTTAAGAACCGAGAACTACAGATCATGAGGAAATTGGACCACTGCAACATAGTCAGGCTACGTTACTTTTTCTACTCCAGTGGGGACAAGAAAGATGAGGTGTATCTGAACCTAGTGCTGGACTTTGTTCCAGAGACGGTGTACAGGGTGGCCCGGCACTTCAACAAGGCCAAGACCACCATCCCCATTATATACGTCAAGGTGTACATGTACCAGCTGTTCCGCAGTCTGGCCTATATCCATTCCCAGGGCGTGTGTCACAGAGACATCAAACCCCAGAACCTGCTGGTGGACCCCGAGACAGCCATCCTCAAACTCTGTGACTTCGGCAGTGCTAAGCAGCTTGTTCGCGGGGAGCCCAACGTGTCCTATATCTGCTCGCGGTACTACCGTGCCCCTGAGCTCATCTTTGGCGCCACGGACTACACGTCCAACATTGACATCTGGTCAGCGGGCTGCGTGCTGGCCGAACTGCTGCTGGGACAGCCCATCTTCCCcggggacagtggagtggaccaACTGGTAGAGATCATCAAGGTTTTGGGGACTCCGACGAGAGAGCAGATCCGAGAGATGAACCCCAACTACACAGAGTTCAAATTCCCCCAGATCAAAGCACACCCCTGGACAAAGGTGTTTAAGCCGCGTACCCCCCCAGAGGCCATCTCCCTGTGTTCCCGTCTGTTAGAGTACACCCCTGTGACCAGGCTGTCCCCCCTGGAGGCCTGCGCCCATGCCTTCTTCGAAGAGCTGCGCCAGCCcactgcccgtctgcccagcggacGAGAACTTCCCCTCCTCTTCAACTTCAGCCCCGTCGAGCTATCTATCCAGCCCCAGTTGAACTCCACACTCATTCCTCCTCACGCTCGAGCACAGACATCACCTGCCTCACACGatGGCAGTGTGTCGGACAGTACCGCCCAGCCCAGCTCAGTACCTGGATCCATCAACAGcacctgaacccccccccccgtcccccatTCACCCTGTCTTTCCCCTTTTCCTCTCAACCCCATCCCTCTCTTACTATTCTTCCACCCCCTCTTAGATCCAAACTTCAAAAgacaactatacacacacacacatacaacaacaaTACTACAAAATCATCTATTATCCCTTGAATATTCCCATTataggtgtaaaaaaaatatctgtTGGTGGCAGTAGTCCAATGACTGTTGGGTTGTAGAAGATGGGTGAATCTGACAAAAGCTATTCTGTATTATAATCTCTGCTAAACAAATTGTATCCCTTTTTTAAAAAACGTATTTATTTGAAAGTGCATTTTGTTTTAGTGATGTATGCCAGTGAATGGGATGCATCAACTGAAGCCTGTTTCAGTTCAGACAGTTTAGGACAATCTTCCATTGAGGTTAAAAACCAAACGGTCACGTGGTCAGAGGACAGATCAGGGACTGCCAATGGGAAAACTCTGGGGAATGGAGGTGTTCATCTACCAAGACATTACTCCTAAACCGAGTCCAAAGTGTTAATTAGTTCTGAAAATTGAAGAactgtgtttttatttgttttattaaatTGGATACCAAACAGCAGCGAATGGAACTGGCATTTTAAATTCGATGAGGtaatttttaattaaaaaaataataataatttatagaAGCTTTTATCACAAAGGTGATTCAAAAATAATCCAAAGGCGGAAACCGCTAGCTGTTTTATTAAACTGTTTCTGAGAAGAAACATCGAAGTGAAAGTCTTAATGTCTTTTATTTGAATAAGAGGGACCTTTTTTAAAAGAATGGAATGTACATATTCAGTTTCTATAAGCTCTTGTCCCAGTCAGTTTAGCTGGAGACGTGTTGGTGAGAAGTAACCTTTGCACATCTCTAAAGGGGAGTAGAGCGGAGCTGTAGGGGCCCGCTGCATCTCTTGTGCAGTGGAGATATGCAACCTGTGTATAGGAAGGGGTAGGGCTCCTCCAGTCACACCTGTACACCAATGGCCATATAGCCGTACTTGAACCAAAGCTCTGTCACATCAACTTTGAAAGTACTTGGCACTTtcactcctccctttctctcatttTTCCTCAATTCAGTCTAGATGCACAATTACACTGCATGTAGGGGAGGTCTTAAGTGTTAGTGCGCTTGTGTGTGAATGAGGTTTTTTCGTGTTTGACCATCTTCCATCTCCAAATCAACCCACTGTAGCACTCTTGTTTTTGTAAGTCTAGATTCTAACAGCATCAGTGATTTATCATCAGTTAAACCTTGTTTTCATCTGGCCCACCAACACAGACTTGCATGTTCACCATGCGTTAGAGCAACCacacctgttctctctccccactcGTCACCGCACAACAACGATGGTTTGATCTAAAATACCTGCACCCAAAAAATGTAAATGCCCCAACCACTTCTGGAGccttctgttcctctcctccttcctctcccactctctccttccctctctttctctcactgtaaATATCAAGTACctttttttatttagttttttttgttattATATTGTTCTTGTAATTTCATTTTATTTTCTCTAGCAGAGGGGAGCTGGTGTAGCAGCGACCAGGCTCCTTCTCAGTCTGTCTGTAAATACAACTTCATTTCAGTCCCTGGCTCGGGGGGAATAACAGAACAAAATGTTTCTCTtgtttttattctctctccctccatttctctctcgtTGCCTTTCTCCCATAAATATTATGATCactttatttattgtattttgggGGGTTTTATTTTGTTTCTCTGGGGAGGGTTTGTTGTCGGCCGAAGGGTTTATTTTGTAAGAAGTCATCAGTGCCCATGTCATGCAAAATATTCCAACTTCCAAGATTATTGGACTTTGATCCAAACTTGGGAGTGTTTTCCAATAAAGGTCCTGTATTTGCAAGTACACATCCTAGCCAGTAGGTGGAactacattttattttcattgaTGTGAAGGGATTCTCACATGACTGCGTCTATGGTAGTCTGGCTGATGTCCCAACAGTATAAATGGCTGATCCTATGTGGGGTTATTGGTGATATTGCTGTATCTGGGTGGGTTTGAATGAGGGGTTGGGTGGGGAGGGTTGTGTAATATGTCCCAAGGCGTGTCCCTTCTCCCGTGTCCCATGTGTTTTGTGTAATGGGTTTAACCTGTTACTTCTGTCTGTGATTACATGAATGAGTGATTGAATTTAATGAATGGATGAAAGAACTGACAAATCTTACAAAAGTGTGAGTTGGGAGACCGtggatacattttaaaaaaaatcttagcTCTTCATTTTAGGAAAACAATGttatttttgtgttttattttccTGGCACAAGTTGGTTTTAATTTGTTGTGATCCTGATCTTTATGGCCCTGCACAAGGGTCATACCACATCACTGGTGGGAACGGAATGGTTTTGAAGTGGatgcgagagagggggggacggagagagactGTTTTTGTTTGTTGGTATAAATCAACTTATGAATAAAGTGATGAAACTGC

Function

NR:

description
PREDICTED: glycogen synthase kinase-3 beta-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08822 GSK3A; glycogen synthase kinase 3 alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941570.1 True 4116 mRNA 0.46 10 21075240 21103699

Neighbor

gene id symbol gene type direction distance location
LOC110509768 LOC106576258 coding upstream 16384 20990131 ~ 21058856 (+)
erfl3 LOC106576393 coding upstream 97759 20900204 ~ 20977481 (+)
pou2f2a pou2f2 coding upstream 190164 20741051 ~ 20885076 (+)
LOC110537492 LOC106605858 coding upstream 379810 20679841 ~ 20695430 (+)
LOC110537453 atn1 coding upstream 425967 20629126 ~ 20649273 (+)
LOC110509776 LOC106576357 coding downstream 1801 21105500 ~ 21136731 (+)
LOC110534415 grik5 coding downstream 44623 21148322 ~ 21311249 (+)
LOC110537588 NA coding downstream 291465 21395164 ~ 21411507 (+)
LOC110537581 LOC106605559 coding downstream 373943 21477642 ~ 21491358 (+)
LOC110534436 LOC106605563 coding downstream 408641 21512340 ~ 21530893 (+)
G120512 NA non-coding upstream 63475 21007089 ~ 21011765 (+)
G120502 NA non-coding upstream 104256 20970455 ~ 20970984 (+)
G120498 NA non-coding upstream 112427 20962063 ~ 20962813 (+)
G120495 NA non-coding upstream 116412 20958105 ~ 20958828 (+)
G120487 NA non-coding upstream 141196 20932743 ~ 20934044 (+)
G120540 NA non-coding downstream 4394 21108093 ~ 21108341 (+)
G120555 NA non-coding downstream 61315 21165014 ~ 21165265 (+)
G120556 NA non-coding downstream 62990 21166689 ~ 21167553 (+)
G120557 NA non-coding downstream 69296 21172995 ~ 21174078 (+)
G120559 NA non-coding downstream 71776 21175475 ~ 21175735 (+)
G120169 NA other upstream 656112 20407862 ~ 20419128 (+)
G120259 NA other upstream 754984 20319739 ~ 20320256 (+)
LOC110537348 LOC106575899 other upstream 890615 20179254 ~ 20185414 (+)
LOC118938333 LOC106605563 other downstream 438398 21532987 ~ 21547038 (+)
G121677 NA other downstream 481722 21585421 ~ 21586101 (+)
LOC110537735 LOC106595974 other downstream 717515 21821165 ~ 21825285 (+)
G122030 NA other downstream 912963 22015130 ~ 22018815 (+)
LOC110537939 apoc1 other downstream 1238828 22342491 ~ 22346615 (+)

Expression


Co-expression Network