LOC110537581 (LOC106605559)


Basic Information

Item Value
gene id LOC110537581
gene name LOC106605559
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21477642 ~ 21491358 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941681.1
CAGGTTCAATGCGGACAGTGTCTTATGAGCCCACGTTGCCTCAGCCACTGTAGATAGATCATGAGTTTCAACAGGGTCAGAAAACCGGCCTCATTGGCCATGTACCATCCAGCCTCCTCCCAGGACCCGTATAGTACAGACAGAGTTGATAAGATTTACAGTAAACCATAATCAACTTGTGTCAACAAAAAACACAGTGGGAAAAATGTGCGTGGGCAAAACAGGGCGTGGGTAGTtgggtaggtgtgtgtgagtgtgttctggtgacaggtagggtggaTAGGTACATTTGCATCACCTGACTCCAGGTGATCCTGAATAAATATTTGCTGACTGAGGAGACTGTGACTGATCAGTATCGACATTTTCGGATTTACCAAGAAGTCTGGACGGTCATTTGGTTAATAGGAAATTGTCCTGTTCATTTCTGATCCGAGGTGTTTGATAAGAGGCAGAACTATGGAGTATCCTCTGGTGTGGGTTCTCATCCTGGTGCTGCTCAACTTCACTACAGATGTCTCTGGCCAGGTGGTGGTTCCCTCGATGAACCCCTTAGCTGTGGGCAGTAATGTCACCCTGAACCTAGTTCCTCAAAGCCCCATCAACATAGGGACCTGGTCATATGAAACTACAATCATCGTACTTTTCTATCCTGGTGGCAGTAGTGTGAGTACAAGTTATCAAAGCAGAGTCTCATTCAGCCGTTCCTCCTCAGAGCTGTCCATAAGCTCTCTCCAACTCAACGACTCAGGACGATATACCGTGCAGGGAATGGAGCCAGTCCTGAAAGCTGTGGTGACTTTGTCTGTCCAGGAGCCCATTTCAAACGTGACTCTAAGGGCCAACGCCACTGATCTAGTGGAATTGAACGACACTGCCATTTTCACCTGCTCTGTCTCGTCTGGCACCTCCCTCTCCTACCGCTGGCTGAATGGCAGCTCAGAAGTCACAGCCAGTGACAGAGTTCGGCTTGGTGGTGGGAACAGCACTCTCACCATAATCAGTGTGACACGATATGATGAAGGGCCGTTCAGATGTGAGGTCATCAATGGAATCAGCAATGGCACCAGCCAGCCCATTGGCCTCAATGTTAGATATGGCCCAAGTAACCTCACCATGATGGTAGTTCCTGAGATGACCATAGGACATACAGCCTACAAGACGGGCTCTGACATCACTCTGTCCTGCTCCGCTCAGTCCAAACCCGCTGTGTCCTACAAGTGGAGGTTTAATGGGACGTTCCTCAACGAGCAAAGCCCACAGCTCAGCCTGCAGAACACCAGAGAGAACCAGACAGGAAGTTACGCCTGCTTAGCTTACAACAATGTCACACTCCGATACGCCACCACGAGCACAATGATAAAGATTGTGGAGCCGATATCAGCGGTGTCGTTGAACCGTGATGGGAAGCCACCGATACTGGATCAGTCGTTCACTCTGCGGTGTGAGGTGACTGGACCTGTAGACTACATTCACTGGTTGATGAATGGCCAGCTCATCTCCCTAAACAACAGAACATTCTTCTCTACGGGCAACAAGACAATGGTTATCAATCCAATCCAGTTGTCTGACAATGGAGAATATCTCTGTGAGGCCTTTAATGCTGTCAGCAACCTGACCAGCATGACTTACAAGCTTGTGGTAAACTTTGGACCAGAGAGACCTGCTGTAACTAGTCCGGATATAGCAATGACAGGACACAGCGTGACCTtcaactgctcagcctcctctCAGCCTCCCAGTCAGTTCAGTTGGATCTTCAATGACTCCCAGGTGGGGGCTGGCTCAGTGTATGAGACTGGCGCACTGATCTTAGCCAATAATGGAGAGTACACCTGTGTGGCCTTCAACAACATCACTGGCAGAAACAGAACTGTCTCCAAGATGCTCACCATCATTGAACCTGTGACCATGACCATGGTGAAAGTCATTGGAGCCCAGCCAATACTGAACGAGAGATTCTCTCTGACCTGTGGCACCGCTGGAACGGTTTACTCCATTCAGTGGATGAGGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACATTCAACTCATTACAGCATTCTGACAACGGAGACTATCAGTGTTCTGCCTCCAATCCCCTCAGCAACATGACCAGCCCAGAATACAGACTGATCGTCAACTATGGTCCAGAGAGACCTGTTATTATGAGTCCGGATATAGCAATGACAGGATACATCGTGACCTtcaactgctcagcctcctctCAGCCTCCCAGCCAGTTTAGCTGGTTCTTCAATGACTCTCAGCTGGAGACTGGCTCAGTGTATGAGACTGGTCCACTGACCTTAGCCAGTCAAGGGGAGTACACCTGTGTGGCCTTTAACAATGTCACTGTCAGAAACAGCACTGTCTCCAAGATGCTCACCGTCATTGCACCTGTGACCATGACCATGGTGAAAGTCATTGGAGCCCAGCCAATACTGAACGAGAGATTCTCTCTGACCTGTCTCACCGCTGGAACGGTTTACTCCATTCAGTGGATGAGGAACGGCTGGGATCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACATTCAACTCATTACAGCATTCTGACAACGGAGACTATCAGTGTTCTGCTTCTAACCCCCTTAGTAACATGACCAGCCCAAACTATAGACTGATCGTGAACTATGGACCAGAGATGCCTGTTATAACGGGACCAGCATTAGGAGAAACAGGACACAACTTGACCTTAAACTGCCTggcctcctctcagcctctcagccagttcagctggttcttcaatGGCTCCCATGTGGCGACTGGCTCAGTGTATGAGACGGGCCCTCTGACTTTAGCCAGTCAAGGGGAGTACACCTGTGTGGCCTTCAACAATGTCACTGTCAGAAACAGCACTGTCTCCAAGATGCTCACCATCATTGCACCTGTGACCATGACCATGGTGAAAGTCATTGGAGCCCAGCCAATACTGAACGAGAGATTCTCTCTGACCTGTGGCACCGCTGGAACGGTTTACTCCATTCAGTGGATGAGGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACATTCAACTCATTACAGCATTCTGACAACGGAGACTATCAGTGTTCTGCTTCTAACCCCCTTAGTAACATGACCAGCCCAAACTATAGACTGATCGTGAACTATGGACCAGAGATGCCTGTTATAACGGGACCAGCATTAGGAGAAACAGGACACAACTTGACCTTAAACTGCCTggcctcctctcagcctctcagccagttcagctggttcttcaatGGCTCCCATGTGGCGACTGGCTCAGTGTATGAGACGGGCCCTCTGACTTTAGCCAGTCAAGGGGAATACACCTGTGTGGCCTTCAACAACATTACTGGCAGAAACAGCAATGCTTCCAAGATGCTCACCGTCATTGAGGCTATAAAGTCAGTGATGGTGAAACGAAACAAAATTCCAATATCATCtgacaacctaaccctgacctgtGATGTCACCGGGCGCTATGACACCATCTACTGGATGAAGGACAACCTGTCTCTGGTCCTGAACAACACCTTGAACTCTGACATAACCATCTCTAACAACTCTCTGCACTTCAGTCCAGTCAAGGTGTCTAACGATGGAAACTATCAGTGCGTTGCCACCAATCTCTTTGGTCCACACACCAGCCCTAAATACCAGCTACGGGTGAACTatggcCCCCTGAGTGTGAACATCTCTGGCCCAGTCTCATTGGTGGTTGGTTCAGTAATCACAGTCACGCTGAAGTGTTCTGCTGACTCCCGGCCAACCAGCGATTACGGGTGGATATTCAACAACCAATCAGTGCTAGGGACTGGTCCTTTGATGGCTGTTATCGCCTCCTTGGAGAATGCAGGGGACTACACTTGTGTGGCCAAGAACCCTGTGACCAATATCTCTATGTCCAAGACCATTAGTCTGGATGTCACTGGCCACTCGCCTGCCCCTCCATTCCTGTCCAGAGTTGGTCTGATGCTGACGGCCCtgctagccctctctctctgcctctgatcAACCACTGAGACCACCACAGTAAGCACACTGCATGTCTGTCTGCTGGCTGGGAGCCAATCACTCTCTACCTTCACTGACTCCCCTCACTGAAAAAGGACTGGATAGAAATAAGTGATTTTGTTTATATTGTACTTGCCCCATCTTGCCACCATAGGGCTGGGTTTAGTATGCCCAGCTCCTTTCCAATGCTTTTACATTGtgaggagagagaacaagaggtcAGATGGGAGGGGTCTATCCCCTTAGAATAGAACCCACCTCGACAGTGTGTTTTTGTCAATCATCtctataaataaaaacaaaaatctTGAAAACTGGTCTTCAACATGATAAATGAAAGGGCAAACATCCACTGCTCAGCAGCACTGCCTAGTTCTGTTTCTAAAAGTTCTTAGATATTTACTGCCCTTGTGACTGTGACTGTTGCCCTGGAGTCCATTCACTGAGTCcctttctgtgttctgtgtttgatCATGTATGTAAACGCTGTTATTTAAGTACAAATTCAGGTTTAATTAACTTGTAAATACCTTAAAGgtaaaaacatttaaattgatAGTACAGTTAACTGGTGTTTAtgtaaaaaatgacttgtttttgCATAAGCTTGTAGATTCTCGGAGGAGAAGCAGGCTTGTGCTGTTGTCTTATGTTAATATTTCCTCTTCATTAATTATTGTCTTAAATAAAGTGTTGTCTTTTCACACCTGTCCTACTGAA

Function

NR:

description
hemicentin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941681.1 True 4824 mRNA 0.48 15 21477642 21491358

Neighbor

gene id symbol gene type direction distance location
LOC110537588 NA coding upstream 66135 21395164 ~ 21411507 (+)
LOC110534415 grik5 coding upstream 166393 21148322 ~ 21311249 (+)
LOC110509776 LOC106576357 coding upstream 340911 21105500 ~ 21136731 (+)
LOC110509817 LOC106576382 coding upstream 373943 21075240 ~ 21103699 (+)
LOC110509768 LOC106576258 coding upstream 418786 20990131 ~ 21058856 (+)
LOC110534436 LOC106605563 coding downstream 20982 21512340 ~ 21530893 (+)
LOC118944067 LOC106597946 coding downstream 39890 21531248 ~ 21533013 (+)
LOC118938333 LOC106605563 coding downstream 41629 21532987 ~ 21547038 (+)
LOC110537595 LOC106605558 coding downstream 64547 21555905 ~ 21570363 (+)
LOC110537622 LOC106605554 coding downstream 180132 21671490 ~ 21676920 (+)
G121618 NA non-coding upstream 12831 21464429 ~ 21464811 (+)
G120646 NA non-coding upstream 97355 21380076 ~ 21380287 (+)
G120641 NA non-coding upstream 101075 21376234 ~ 21376567 (+)
G120632 NA non-coding upstream 114621 21362619 ~ 21363021 (+)
G120627 NA non-coding upstream 118149 21352155 ~ 21359493 (+)
G121676 NA non-coding downstream 95233 21586591 ~ 21594643 (+)
G121726 NA non-coding downstream 174925 21666283 ~ 21667174 (+)
G121727 NA non-coding downstream 176053 21667411 ~ 21667706 (+)
G121732 NA non-coding downstream 181043 21672401 ~ 21672730 (+)
G121861 NA non-coding downstream 191191 21682549 ~ 21682813 (+)
erfl3 LOC106576393 other upstream 501443 20900204 ~ 20977481 (+)
G120169 NA other upstream 1058514 20407862 ~ 20419128 (+)
G120259 NA other upstream 1157386 20319739 ~ 20320256 (+)
LOC110537348 LOC106575899 other upstream 1293017 20179254 ~ 20185414 (+)
G121677 NA other downstream 94063 21585421 ~ 21586101 (+)
LOC110537735 LOC106595974 other downstream 329856 21821165 ~ 21825285 (+)
G122030 NA other downstream 525304 22015130 ~ 22018815 (+)
LOC110537939 apoc1 other downstream 851169 22342491 ~ 22346615 (+)

Expression


Co-expression Network