LOC110534436 (LOC106605563)


Basic Information

Item Value
gene id LOC110534436
gene name LOC106605563
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21512340 ~ 21530893 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961738.1
CACCTGACTCCAGCAACATTACATGATCCTGAATAAATATTTGTTGATTGAGAGGAGACTGTGACTGTGGAGTATTGACATGTTTGGATTTACCAAGAAGTCTGGACAGTAATTTGGTTCATAGGAAAGTTTACCGTTCATTTCTGATCCGTGGTGTTTGATAAGTGGCAGAACTATGGAGTATCCTCTGGTGTGGGTTCTCATCCTGGTGCTGCTCAACTTCACTATAGATGTCTCTGGCCAGGTGGTGGTTCCCTCGATGAACCCCTTAGCTGTGGGCAGTAATGTCACCCTGAACCTAGTTCCTCAAAGCCCCATCAACATAGGGACCTGGTCATATGAAACTACAATCATCGTACTTTTCTATCCTGGTGGCAGTAGTGTGAGTACAAGTTATCAAAGCAGAGTCTCATTCAACCGTTCCTCCTCAGAGCTGTCCATATGCTCTCTCCAACTCAACGACTCAGGTCTATATACCGTGCAGGGAATGGAGCCAGTCCTGTATGCTGTGGTGACCTTGTCTGTCCGGGAGCCCATTTCAAACGTGACTCTAAGGGCCAACGCCACTGATCTAGTGGAATTGAACGACACTGCCATTTTCACCTGCTCTGTCTCCTCTGGCACCTCCCTCTCCTACCGCTGGCTAAATGGCAGTTTAGAGGTCACAGCCAGTGACCGAGTTTGGTTTGGTGATGGGAACAGCACTCTCACCATAGTCAGTGTGACACGATACGATGATGGGCCGTTCAGATGTGAGGTCATCAACGGAATCAGCAACGGCACCAGCCAGCCCATTGGCCTCAATGTTAGATATGGCCCAAGTAACCTCACCATGATGGTAGTTCCTGAGATGACCATAGGACATACAGCCTATAAGACGGGCTCTGACATCACTCTGTCCTGCTCCGCTCAGTCCAAACCCGCTGAGTCCTACAAGTGGGGGTTTAATGGGACGTTCCTCAATGAGCAAAGCCCACAGCTCAGCCTGCAGAACATCAGGGAGAACCAGACAGGAAGTTATGCCTGCTTAGCCCACAACAATGTCACACTCCATGTCGCCTCCATGACCACAATGATAAAGATCGTGGAGCCGATATCAGCGGTTTCGTTGAACCGTGATGGGAAGCCACCAATACTGGATCAGTCGTTCACTCTGCGGTGTGAGGTGACTGGACCTGTAAACTACATTATATGGCTGATGAATGGCCAGCTCATCTCCCTAAATAACAGAACATTCTTCTCTACGAACAACAACACAATGGTTATCAACCCAATCCAATTTTCTGACAATGGAGAATATCTCTGTGAGGCCTTTAATGCTGTCAGCAACCTGACCAGCATAGCATACAATCATGTGGTGAACTTTGGACCAGAGAGGCCTGCTATAACTAGTCCGGATAGAGCAATGACAGGACACATCGTGACCTTCAATTGCTCAGCCTCCTCTCAGCCTCCCAGCcagttcagctggttcttcaatGGCTCCCAGGTGGCGGCTGGCTCAGTGTATGAGACTGGCCGACTGACCTTAGCCAATCATGGGGAATACACCTGTGTGGCCTTCAACAACATCACTGGCAGAAACAGCACTGTCTCCAAGATGCTCAACATCATTGTCCCAGTAACCATGGCCATGGTGAAAGTCATGAGTTCCCAGCTAATAGCAGACTACATGTTTGCGATGACCTGTGAGACCACAGGAACCATTTACTCCATTCAGTGGATGAGGAATGGCTGGCCTCTGTATGCTGATAACAGAAGAGACATCTCTATGGACAACAATACACTGACCTTCAACTCTGTCCAAAATTCTGACAACGGAGACTATCAGTGTTCTGCCTACAACCCCCTGAGCAATATGACCAGCCCAGAATACAGACTCATCGTCAACTATGGCCCAGAGAGACCTGTTATCATGAGTCCGGATATAGCAATGACAGGATACATCGTGACCTtcaactgctcagcctcctctCAGCCTCCCAGCCAGTTTAGCTGGTTCTTCAATGGCTCCCAGGTGGGGGTTGGCTCAGTGTATGAGACTGGCCCACTGACCTTAGCCAGCCATGGAGAGTACAACTGTGTGGCCTTCAACAACATCACTGGCAGAAACAGCACTGTCTCCAAGATTTTCACCATCATTGTTCCAGTAACCACGTCCACGGTTAAAGTCATTGGTGCCCAGCCAATTGCAGACTACATGTTTACTCTGACCTGTGAGACATCTGGAACCATTTACTCCATTCAGTGGATGAGGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACATTCAACTCTGTCCAGCATTCTGACAACGGAGACTATCAGTGTTCTGCCTCCAACCCCTTCAGCAACATGACCAGCCCATACTACAAACTGATCGTCAACTATGGACCGGAGATGCCAATAATAACAGGACCAGCATTAGGAGAAACAGGACACAGCGTGACCTTCAACTGCTCAGcttcctctcagcctctcagccagttcagctggttcttcaatGGCTCCCAGGTGGCAACTGGCTCAAAGTATGATACTGGCCCACTGACTTTAGCCAGTCATGGGGTGTACACCTGTGTGGCCTTCAACAACATCACTGTCAGAAACAGCACTGTCACCAAGATGCTCACTGTCGTTGCAACAGTGACCATGACCATGGTGAAAGTCATTGGAGCCCAGCCAATACTGAACGAGAGATTCTCTCTGACCTGTGGCACCGCTGGAGCGGTTTACTCCATTCAGTGGATGAGGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACCTTCAACTCTGTCCAGCATTCTGACAAAGGAGACTATCAGTGTTCTGCCTCCAACCCCTTCAGCAACATGACCAGCCTATACTACAAACTGATCGTCAACTATGGACCGGAGATGCCAATAATAACAGGACCAGCATTAGGAGAAACAGGACACAGCGTGACCTTCAACTGCTCAGcttcctctcagcctctcagccagttcagctggttcttcaatGGCTCCCAGGTGGCAACTGGCTCAAAGTATGATACTGGCCCACTGACTTTAGCCAGTCATGGGGTGTACACCTGTGTGGCCTTCAACAACATCACTGTCAGAAACAGCACTGTCACCAAGATGCTCACTGTCGTTGCAACAGTGACCATGACCATGGTGAAAGTCATTGGAGCCCAGCCAATACTGAACGAGAGATTCTCTCTGACCTGTGGCACCGCTGGAACGGTTTACTCCATTCAGTGGATGAGGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACCTTCAACTCTGTCCAGCATTCTGACAAAGGAGACTATCAGTGTTCTGCCTCCAACCCCTTCAGCAACATGACCAGCCTATACTACAAACTGATCGTCAACTATGGACCGGAGATGCCAATAATAACAGGACCAGCATTAGGAGAAACAGGACACAGCGTGACCTTCAACTGCTCAGcttcctctcagcctctcagccagttcagctggttcttcaatGGCTCCCAGGTGGCAACTGGCTCAAAGTATGATACTGGCCCACTGACTTTAGCCAGTCATGGGGTGTACACCTGTGTGGCCTTCAACAACATCACTGTCAGAAACAGCACTGTCACCAAGATGCTCACTGTCGTTGCAACAGTGACCATGACCATGGTGAAAGTCATTGGAGCCCAGCCAATACTGAACGAGAGATTCTCTCTGACCTGTGGCACCGCTGGAACGGTTTACTCCATTCAGTGGATGAGGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACCTTCAACTCTGTCCAGCATTCTGACAAAGGAGACTATCAGTGTTCTGCCTCCAACCCCTTCAGCAACATGACCAGCCTATACTACAAACTGATCGTCAACTATGGACCGGAGATGCCAATAATAACAGGACCAGCATTAGGAGAAACAGGACACAGCGTGACCTTCAACTGCTCAGcttcctctcagcctctcagccagttcagctggttcttcaatGGCTCCCAGGTGGCAACTGGCTCAAAGTATGATACTGGCCCACTGACTTTTGCCAGTCATGGGGTGTACACCTGTGTGGCCTTCAACAACATCACTGTCAGAAACAGCACTGTCACCAAGATGCTCACTGTCGTTGCAACAGTGACCATGACCATGGTGAAAGTCATTGGAGCCCAGCCAATACTGAACGAGAGATTCTCTCTGACCTGTGGCACCGCTGGAACGGTTTACTCCATTCAGTGGATGAGGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACCTTCAACTCTGTCCAGCATTCTGACAAAGGAGACTATCAGTGTTCTGCCTCCAACCCCTTCAGCAACACGACCAGCCTATACTACAAACTGATCGTCAACTATGGACCGGAGATGCCAATAATAACAGGACCAGCATTAGGAGAAACAGGACACAGCGTGACCTTCAACTGCTCAGcttcctctcagcctctcagccagttcagctggttcttcaatGGCTCCCAGGTGGCAACTGGCTCAAAGTATGATACTGGCCCACTGACTTTAGCCAGTCATGGGGTGTACACCTGTGTGGCCTTCAACAACATCACTGTCAGAAACAGCACTGTCACCAAGATGCTCACTGTCGTTGCAACAGTGACCATGACCATGGTGAAAGTCATTGGAGCCCAGCCAATACTGAACGAGAGATTCTCTCTGACCTGTGGCACCGCTGGAACGGTTTACTCCATTCAGTGGATGAGGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACCTTCAACTCTGTCCAGCATTCTGACAAAGGAGACTATCAGTGTTCTGCCTCCAACCCCTTCAGCAACACGACCAGCCTATACTACAAACTGATCGTCAACTATGGACCGGAGATGCCAATAATAACAGGACCAGCATTAGGAGAAACAGGACACAGCGTGACCTTCAACTGCTCAGcttcctctcagcctctcagccagttcagctggttcttcaatGGCTCCCAGGTGGCAACTGGCTCAAAGTATGATACTGGCCCACTGACTTTAGCCAGTCATGGGGTGTACACCTGTGTGGCCTTCAACAACATCACTGTCAGAAACAGCACTGTCACCAAGATGCTCACTGTCGTTGCAACAGTGACCATGACCATGGTGAAAGTCATTGGAGCCCAGCCAATACTGAACGAGAGATTCTCTCTGACCTGTGGCACCGCTGGAACGGTTTACTCCATTCAGTGGATGAGGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACCTTCAACTCTGTCCAGCATTCTGACAAAGGAGACTATCAGTGTTCTGCCTCCAACCCCTTCAGCAACATGACCAGCCTATACTACAAACTGATCGTCAACTATGGACCGGAGATGCCAATAATTACAGGACCAGCATTAGGAGAAACAGGACACAGCGTGACCTTCAACTGCTCAGcttcctctcagcctctcagccagttcagctggttcttcaatGGCTCCCAGGTGGCAACTGGCTCAAAGTATGATACTGGCCCACTGACTTTAGCCAGTCATGGGGTGTACACCTGTGTGGCCTTCAACAACATCACTGTCAGAAACAGCACTGTCACCAAGATGCTCACTGTCGTTGCAACAGTGACCATGACCATGGTGAAAGTCATTGGAGCCCAGCCAATCCTGAACGAGAGATTCTCTCTGACCTGTGGCACCGCTGGAACGGTTTACTCCATTCAGTGGATGAGGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACATTCAACTCTGTCCAGCATTCTGACAAAGGAGACTATCAGTGTTCTGCCTCCAACCCCTTCAGCAACATGACCAGCCCATACTACAAACTGATCGTCAACTATGGACCGGAGATGCCAATAATGACAGGACCAGCATTAGGAGAAACAGGACACAGCGTGACCTTCAACTGCTCAGcttcctctcagcctctcagccagttcagctggttcttcaatGGCTCCCAGGTGGCAACTGGCTCAAAGTATGATACTGGCCCACTGACTTTAGCCAGTCATGGGGTGTACACCTGTGTGGCCTTCAACAACATCACTGTCAGAAACAGCACTGTCACCAAGATGCTCACTGTCGTTGCAACAGTGACCATGACCATGGTGAAAGTCATTGGAGCCCAGCCAATCCTGAACGAGAGATTCTCTCTGACCTGTGGCACCGCTGGAACGGTTTACTCCATTCAGTGGATGAGGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACATTCAACTCTGTCCAGCATTCTGACAAAGGAGACTATCAGTGTTCTGCCTCCAACCCCTTCAGCAACATGACCAGCCCATACTACAAACTGATCGTCAACTATGGACCGGAGATGCCAATAATTACAGGACCAGCATTAGGAGAAACAGGACACAGCGTGACCTTCAACTGCTCAGcttcctctcagcctctcagccagttcagctggttcttcaatGGCTCCCAGGTGGCAACTGGCTCAAAGTATGATACTGGCCCACTGACTTTAGCCAGTCATGGGGTGTACACCTGTGTGGCCTTCAACAACATCACTGTCAGAAACAGCACTGTCACCAAGATGCTCACTGTCGTTGCAACAGTGACCATGACCATGGTGAAAGTCATTGGAGCCCAGCCAATCCTGAACGAGAGATTCTCTCTGACCTGTGGCACCGCTGGAACGGTTTACTCCATTCAGTGGATGAGGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACATTCAACTCTGTCCAGCATTCTGACAAAGGAGACTATCAGTGTTCTGCCTCCAACCCCTTCAGCAACATGACCAGCCCATACTACAAACTGATCGTCAACTATGGACCGGAGATGCCAATAATTACAGGACCAGCATTAGGAGAAACAGGACACAGCGTGACCTTCAACTGCTCAGcttcctctcagcctctcagccagttcagctggttcttcaatGGCTCCCAGGTGGCAACTGGCTCAAAGTATGATACTGGCCCACTGACTTTAGCCAGTCATGGGGTGTACACCTGTGTGGCCTTCAACAACATCACTGTCAGAAACAGCACTGTCACCAAGATGCTCACTGTCGTTGCAACAGTGACCATGACCATGGTGAAAGTCATTGGAGCCCAGCCAATCCTGAACGAGAGATTCTCTCTGACCTGTGGCACCGCTGGAACGGTTTACTCCATTCAGTGGATGAGGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACATTCAACTCTGTCCAGCATTCTGACAAAGGAGACTATCAGTGTTCTGCCTCCAACCCCTTCAGCAACATGACCAGCCCATACTACAAACTGATTGTCAACTGTGAGTAG

Function

NR:

description
hemicentin-1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961738.1 True 7708 mRNA 0.49 29 21512340 21530893

Neighbor

gene id symbol gene type direction distance location
LOC110537581 LOC106605559 coding upstream 20982 21477642 ~ 21491358 (+)
LOC110537588 NA coding upstream 100833 21395164 ~ 21411507 (+)
LOC110534415 grik5 coding upstream 201091 21148322 ~ 21311249 (+)
LOC110509776 LOC106576357 coding upstream 375609 21105500 ~ 21136731 (+)
LOC110509817 LOC106576382 coding upstream 408641 21075240 ~ 21103699 (+)
LOC118944067 LOC106597946 coding downstream 355 21531248 ~ 21533013 (+)
LOC118938333 LOC106605563 coding downstream 2094 21532987 ~ 21547038 (+)
LOC110537595 LOC106605558 coding downstream 25012 21555905 ~ 21570363 (+)
LOC110537622 LOC106605554 coding downstream 140597 21671490 ~ 21676920 (+)
LOC110514317 LOC106578808 coding downstream 167402 21698295 ~ 21704763 (+)
G121618 NA non-coding upstream 47529 21464429 ~ 21464811 (+)
G120646 NA non-coding upstream 132053 21380076 ~ 21380287 (+)
G120641 NA non-coding upstream 135773 21376234 ~ 21376567 (+)
G120632 NA non-coding upstream 149319 21362619 ~ 21363021 (+)
G120627 NA non-coding upstream 152847 21352155 ~ 21359493 (+)
G121676 NA non-coding downstream 55698 21586591 ~ 21594643 (+)
G121726 NA non-coding downstream 135390 21666283 ~ 21667174 (+)
G121727 NA non-coding downstream 136518 21667411 ~ 21667706 (+)
G121732 NA non-coding downstream 141508 21672401 ~ 21672730 (+)
G121861 NA non-coding downstream 151656 21682549 ~ 21682813 (+)
LOC110509768 LOC106576258 other upstream 496449 20990131 ~ 21058856 (+)
erfl3 LOC106576393 other upstream 536141 20900204 ~ 20977481 (+)
G120169 NA other upstream 1093212 20407862 ~ 20419128 (+)
G120259 NA other upstream 1192084 20319739 ~ 20320256 (+)
LOC110537348 LOC106575899 other upstream 1327715 20179254 ~ 20185414 (+)
G121677 NA other downstream 54528 21585421 ~ 21586101 (+)
LOC110537735 LOC106595974 other downstream 290321 21821165 ~ 21825285 (+)
G122030 NA other downstream 485769 22015130 ~ 22018815 (+)
LOC110537939 apoc1 other downstream 811634 22342491 ~ 22346615 (+)

Expression


Co-expression Network