LOC118938333 (LOC106605563)


Basic Information

Item Value
gene id LOC118938333
gene name LOC106605563
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21532987 ~ 21547038 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941721.1
tgttctgcctcCAACCCCTTCAGCAACATGACCAGCCTATACTACAAACTGATCGTCAACTATGGACCGGAGATGCCAATAATTACAGGACCAGCATTAGGAGAAACAGGACACAGCGTGACCTTCAACTGCTCAGcttcctctcagcctctcagccagttcagctggttcttcaatGGCTCCCAGGTGGCAACTGGCTCAAAGTATGATACTGGCCCACTGACTTTAGCCAGTCATGGGGTGTACACCTGTGTGGCCTTCAACAACATCACTGTCAGAAACAGCACTGTCACCAAGATGCTCACTGTCGTTGCAACAGTGACCATGACCATGGTGAAAGTCATTGGAGCCCAGCCAATCCTGAACGAGAGATTCTCTCTGACCTGTGGCACCGCTGGAACGGTTTACTCCATTCAGTGGATGAGGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACATTCAACTCTGTCCAGCATTCTGACAACGGAGACTATCAGTGTTCTGCCTCCAACCCCTTCAGCAACATGACCAGCCCATACTACAAACTGATCGTCAACTATGGACCGGAGATGCCAATAATTACAGGACCAGCATTAGGAGAAACAGGACACAGCGTGACCTTCAACTGCTCAGcttcctctcagcctctcagccagttcagctggttcttcaatGGCTCCCAGGTGGCAACTGGCTCAAAGTATGATACTGGCCCACTGACTTTAGCCAGTCATGGGGTGTACACCTGTGTGGCCTTCAACAACATCACTGTCAGAAACAGCACTGTCACCAAGATGCTCACTGTCGTTGCAACAGTGACCATGACCATGGTGAAAGTCATTGGAGCCCAGCCAATACTGAACGAGAGATTCTCTCTGACCTGTGGCACCGCTGGAACGGTTTACTCCATTCAGTGGATGAGGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACCTTCAACTCTGTCCAGCATTCTGACAAAGGAGACTATCAGTGTTCTGCCTCCAACCCCTTCAGCAACATGACCAGCCTATACTACAAACTGATCGTCAACTATGGACCGGAGATGCCAATAATTACAGGACCAGCATTAGGAGAAACAGGACACAGCGTGACCTTCAACTGCTCAGcttcctctcagcctctcagccagttcagctggttcttcaatGGCTCCCAGGTGGCAACTGGCTCAAAGTATGATACTGGCCCACTGACTTTAGCCAGTCATGGGGTGTACACCTGTGTGGCCTTCAACAACATCACTGTCAGAAACAGCACTGTCACCAAGATGCTCACTGTCGTTGCAACAGTGACCATGACCATGGTGAAAGTCATTGGAGCCCAGCCAATCCTGAACGAGAGATTCTCTCTGACCTGTGGCACCGCTGGAACGGTTTACTCCATTCAGTGGATGAGGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACCTTCAACTCTGTCCAGCATTCTGACAAAGGAGACTATCAGTGTTCTGCCTCCAACCCCTTCAGCAACATGACCAGCCTATACTACAAACTGATCGTCAACTATGGACCGGAGATGCCAATAATTACAGGACCAGCATTAGGAGAAACAGGACACAGCGTGACCTTCAACTGCTCAGcttcctctcagcctctcagccagttcagctggttcttcaatGGCTCCCAGGTGGCAACTGGCTCAAAGTATGATACTGGCCCACTGACTTTAGCCAGTCATGGGGTGTACACCTGTGTGGCCTTCAACAACATCACTGTCAGAAACAGCACTGTCACCAAGATGCTCACTGTCGTTGCAACAGTGACCATGACCATGGTGAAAGTCATTGGAGCCCAGCCAATCCTGAACGAGAGATTCTCTCTGACCTGTGGCACCGCTGGAACGGTTTACTCCATTCAGTGGATGAGGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACATTCAACTCTGTCCAGCATTCTGACAAAGGAGACTATCAGTGTTCTGCCTCCAACCCCTTCAGCAACATGACCAGCCCATACTACAAACTGATCGTCAACTATGGACCGGAGATGCCAATAATAACAGGACCAGCATTAGGAGAAACAGGACACAGCGTGACCTTCAACTGCTCAGcttcctctcagcctctcagccagttcagctggttcttcaatGGCTCCCAGGTGGCAACTGGCTCAAAGTATGATACTGGCCCACTGACTTTAGCCAGTCATGGGGTGTACACCTGTGTGGCCTTCAACAACATCACTGTCAGAAACAGCACTGTCACCAAGATGCTCACTGTCGTTGCAACAGTGACCATGACCATGGTGAAAGTCATTGGAGCCCAGCCAATACTGAACGAGAGATTCTCTCTGACCTGTGGCACCGCTGGAACGGTTTACTCCATTCAGTGGATGAGGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACCTTCAACTCTGTCCAGCATTCTGACAAAGGAGACTATCAGTGTTCTGCCTCCAACCCCTTCAGCAACATGACCAGCCTATACTACAAACTGATCGTCAACTATGGACCGGAGATGCCAATAATTACAGGACCAGCATTAGGAGAAACAGGACACAGCGTGACCTTCAACTGCTCAGcttcctctcagcctctcagccagttcagctggttcttcaatGGCTCCCAGGTGGCAACTGGCTCAAAGTATGATACTGGCCCACTGACTTTAGCCAGTCATGGGGTGTACACCTGTGTGGCCTTCAACAACATCACTGTCAGAAACAGCACTGTCACCAAGATGCTCACTGTCGTTGCAACAGTGACCATGACCATGGTGAAAGTCATTGGAGCCCAGCCAATCCTGAACGAGAGATTCTCTCTGACCTGTGGCACCGCTGGAACGGTTTACTCCATTCAGTGGATGAGGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACATTCAACTCTGTCCAGCATTCTGACAAAGGAGACTATCAGTGTTCTGCCTCCAACCCCTTCAGCAACATGACCAGCCCATACTACAAACTGATCGTCAACTATGGACCGGAGATGCCAATAATTACAGGACCAGCATTAGGAGAAACAGGACACAGCGTGGCCTTCAACTGCTCAGcttcctctcagcctctcagccagttcagctggttcttcaatGGCTCCCAGGTGGCAACTGGCTCAAAGTATGATACTGGCCCACTGACTTTAGCCAGTCATGGGGTGTACACCTGTGTGGCCTTCAACAACATCACTGTCAGAAACAGCACTGTCACCAAGATGCTCACTGTCGTTGCAACAGTGACCATGACCATGGTGAAAGTCATTGGAGCCCAGCCAATCCTGAACGAGAGATTCTCTCTGACCTGTGGCACCGCTGGAACGGTTTACTCCATTCAGTGGATGAGGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACCTTCAACTCTGTCCAGCATTCTGACAAAGGAGACTATCAGTGTTCTGCCTCCAACCCCTTCAGCAACATGACCAGCCCATACTACAAACTGATCGTCAACTATGGACCGGAGATGCCAATAATTACAGGACCAGCATTAGGAGAAACAGGACACAGCGTGACCTTCAACTGCTCAGcttcctctcagcctctcagccagttcagctggttcttcaatGGCTCCCAGGTGGCAACTGGCTCAAAGTATGATACTGGCCCACTGACTTTAGCCAGTCATGGGGTGTACACCTGTGTGGCCTTCAACAACATCACTGTCAGAAACAGCACTGTCACCAAGATGCTCACTGTCGTTGCAACAGTGACCATGACCATGGTGAAAGTCATTGGAGCCCAGCCAATCCTGAACGAGAGATTCTCTCTGACCTGTGGCACCGCTGGAACGGTTTACTCCATTCAGTGGATGAGGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACATTCAACTCTGTCCAGCATTCTGACAACGGAGACTATCAGTGTTCTGCCTCCAACCCCTTCAGCAACATGACCAGCCCATACTACAAACTGATCGTCAACTATGGACCGGAGATGCCAATAATAACAGGACCAGCATTAGGAGAAACAGGACACAGCGTGACCTTCAACTGCTCAGcttcctctcagcctctcagccagttcagctggttcttcaatGGCTTCCAGGTGGCAACTGCCTCAGAGTATGATACTGGCCCACTCACCTTAGCCAGTCAGGGGGAGTACACCTGTGTGGCCTTCAACAACCTTACTGGCATAAACAGCACTGCTTCAAAGATGCTCACTGTCGTTGgcCACTCGCCTGCCCCTCCGTTCCAGTCCAGAGTTGGTCTGATGCTGACGGCCCTGTTAgccctctctctatgcctctgATCAACCACTGAGATCCCCACAGTATGCACACTGCATGTCTGTCTGCTGGCTGGGAGCCAATCACTCCCTTCCCTCTACCCCCACTGACTCTCCTTGCTGATCTGAAAAAGGGCTGGATAGAAATAAGTAGTATTGTCAATATTGTAATTGCCTCACCTCACCACCATAGGGCTGGGTTTAGCGTGCTTAGCTCCTTAGCTCTTTTCCAATGCTTTTAGAATGTGAGGAGAGTCAACAAGAGGTCAGATGAGAGGGGCCTATCCCCTTAGAATAGAACCCACCTCTACAATGTGTTTTTATGTCAATAATCTCTATAAACATATTTTCTTTTTTAAAACTAAAGTCTTGAAAACTggtcttcaacaacaacaaggtAATTGAAGGCGCAAAGATTCGCTGCTCAGTTGTGCTGCCTATTTCTGATTGTAATTAAATGTTCTTAGATATTCACTGCCCTTGTGACTGTGACTGTTGCTCTGGAGTCCATTCACTGAGTCCCTTTCTGtgttctgtatttgatcatgtatgtaAACTCTGTTATTTAAGTACAAATTCAGGTTTAATTAACTTGTAAATACCTTAAAGGTAAAACATTTCAATTGATAGTACAGTTAACTGGTGTTTATGTAAAATATGACTTGTTTTTGCATAAGCTTGTAAATTCTCGGAGGAGACGCAGGCTTGTGCTGTTGTCTTATGTTTATACTTCCTCTTCATTAATTATTGTCTTAAATAAAGTGTTGTCTTTTCACCCATGTCCTACTGAAT
>TU140444
ATGGACCGGAGATGCCAATAATAACAGGACCAGCATTAGGAGAAACAGGACACAGCGTGACCTTCAACTGCTCAGcttcctctcagcctctcagccagttcagctggttcttcaatGGCTTCCAGGTGGCAACTGCCTCAGAGTATGATACTGGCCCACTCACCTTAGCCAGTCAGGGGGAGTACACCTGTGTGGCCTTCAACAACCTTACTGGCATAAACAGCACTGCTTCAAAGATGCTCACTGTCGTTGgcCACTCGCCTGCCCCTCCGTTCCAGTCCAGAGTTGGTCTGATGCTGACGGCCCTGTTAgccctctctctatgcctctgATCAACCACTGAGATCCCCACAGTATGCACACTGCATGTCTGTCTGCTGGCTGGGAGCCAATCACTCCCTTCCCTCTACCCCCACTGACTCTCCTTGCTGATCTGAAAAAGGGCTGGATAGAAATAAGTAGTATTGTCAATATTGTAATTGCCTCACCTCACCACCATAGGGCTGGGTTTAGCGTGCTTAGCTCCTTAGCTCTTTTCCAATGCTTTTAGAATGTGAGGAGAGTCAACAAGAGGTCAGATGAGAGGGGCCTATCCCCTTAGAATAGAACCCACCTCTACAATGTGTTTTTATGTCAATAATCTCTATAAACATATTTTCTTTTTTAAAACTAAAGTCTTGAAAACTggtcttcaacaacaacaaggtAATTGAAGGCGCAAAGATTCGCTGCTCAGTTGTGCTGCCTATTTCTGATTGTAATTAAATGTTCTTAGATATTCACTGCCCTTGTGACTGTGACTGTTGCTCTGGAGTCCATTCACTGAGTCCCTTTCTGtgttctgtatttgatcatgtatgtaAACTCTGTTATTTAAGTACAAATTCAGGTTTAATTAACTTGTAAATACCTTAAAGGTAAAACATTTCAATTGATAGTACAGTTAACTGGTGTTTATGTAAAATATGACTTGTTTTTGCATAAGCTTGTAAATTCTCGGAGGAGACGCAGGCTTGTGCTGTTGTCTTATGTTTATACTTCCTCTTCATTAATTATTGTCTTAAATAAAGTGTTGTCTTTTCACCCATGTCCTACT

Function

NR:

description
hemicentin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941721.1 False 5385 mRNA 0.48 19 21532987 21547038
TU140444 True 1096 TUCP 0.43 2 21542097 21547034
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110534436 LOC106605563 coding upstream 2094 21512340 ~ 21530893 (+)
LOC110537581 LOC106605559 coding upstream 41629 21477642 ~ 21491358 (+)
LOC110537588 NA coding upstream 121480 21395164 ~ 21411507 (+)
LOC110534415 grik5 coding upstream 221738 21148322 ~ 21311249 (+)
LOC110509776 LOC106576357 coding upstream 396256 21105500 ~ 21136731 (+)
LOC110537595 LOC106605558 coding downstream 8867 21555905 ~ 21570363 (+)
LOC110537622 LOC106605554 coding downstream 124452 21671490 ~ 21676920 (+)
LOC110514317 LOC106578808 coding downstream 151257 21698295 ~ 21704763 (+)
LOC110537629 LOC106578808 coding downstream 158226 21705264 ~ 21708361 (+)
LOC110537775 LOC106605724 coding downstream 189711 21736749 ~ 21742169 (+)
G121618 NA non-coding upstream 68176 21464429 ~ 21464811 (+)
G120646 NA non-coding upstream 152700 21380076 ~ 21380287 (+)
G120641 NA non-coding upstream 156420 21376234 ~ 21376567 (+)
G120632 NA non-coding upstream 169966 21362619 ~ 21363021 (+)
G120627 NA non-coding upstream 173494 21352155 ~ 21359493 (+)
G121676 NA non-coding downstream 39553 21586591 ~ 21594643 (+)
G121726 NA non-coding downstream 119245 21666283 ~ 21667174 (+)
G121727 NA non-coding downstream 120373 21667411 ~ 21667706 (+)
G121732 NA non-coding downstream 125363 21672401 ~ 21672730 (+)
G121861 NA non-coding downstream 135511 21682549 ~ 21682813 (+)
LOC110509768 LOC106576258 other upstream 517096 20990131 ~ 21058856 (+)
erfl3 LOC106576393 other upstream 556788 20900204 ~ 20977481 (+)
G120169 NA other upstream 1113859 20407862 ~ 20419128 (+)
G120259 NA other upstream 1212731 20319739 ~ 20320256 (+)
LOC110537348 LOC106575899 other upstream 1348362 20179254 ~ 20185414 (+)
G121677 NA other downstream 38383 21585421 ~ 21586101 (+)
LOC110537735 LOC106595974 other downstream 274176 21821165 ~ 21825285 (+)
G122030 NA other downstream 469624 22015130 ~ 22018815 (+)
LOC110537939 apoc1 other downstream 795489 22342491 ~ 22346615 (+)
apoc4 NA other downstream 801545 22348543 ~ 22349936 (+)
LOC118944067 LOC106597946 coding upstream 9084 21531248 ~ 21533013 (+)

Expression

LOC118938333(LOC106605563) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
End of interactive chart.

LOC118938333(LOC106605563) Expression in each Bioproject

Bar chart with 10 bars.
LOC118938333(LOC106605563) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
End of interactive chart.

Co-expression Network