LOC110537611


Basic Information

Item Value
gene id LOC110537611
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21553518 ~ 21555867 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035623.1
GCCGTCGCGCAGATTTGAcgtttttgtcatttagcagaagctcttatccagagcaatagAGTGCTTACATTCTCATACTTTTTTTCtgtcgggccgggcgcagtgcgcgctaaccaagatggccaggtgcacggtgtttcctctaacacattggtgcggctgggttgggttggaggcgcgctgtgttaagaagcagtgtgggttgtgtttcggaggaagcaGGGCTTtcgagttgtagcgatgagacaagatggaAAGGCAACCAAAGTGGGTCTTAGCTTTGGgtatgaccagtgagatatacctgtttgagcgcgtgctacgggtgggtgttgttatgttgatcagtgagctgagataaggcggagctttacctagcaaagacttatagatgacctggagccagtgggtctggcgacgaatatgtagcgagggccaaccGACGAGAGCATACCAGTTGCAGTGGtaggtggtataaggggctttggttaCAAAGcggatggtactgtgatagactgcatccagtttactGAGTAGGTGACGCAACATAGAATGCCTTGTGGAGATTGAGCAATGGAGAGTTGGCCCACATCAGCCCAAAGGTTGTGGTGCTGTGGGTGGGCACCAATAATCATGGTCACACTGCAGAGCAGATCTGTGGAGGCATCATGGCCATAGTCCAACTCATCAAAGACGAGCTGACTTGCAGAGGACATACTGATAAATATCTCTGACACTGTGATTCTGTAGCCGCTGATGTTGTGACTTCCTACAAGCCTCTCGGGCTGGTGTTTACTCAACACTCGTTGCTGTGGGATTAATATATAAGTGCCTTCTCAGAGAAGCTTGTTAGACATTCCTTTTGGCTTCTGTTCTGGAGATGTTCTCTGTGAATTCTTGTAATAAACTGAAATGATTTAGATTAATATGATTGACTGCTCTCCCTGTTGTTCACCTCAAAAATCCCCTTTGCAACCATTAACCTTTTTGATAACACAAACTTAAATTATGAACTGCATACTTTATGGACTCCATTATCATTGCTAACCACAGCAACGAGTGGGCTGGAAGAAAAGCCTGCACTAAAGGCTTTCTAAAACCAGGGTTggtaaccactgcaccactccatTCTATTGGACCATAatgtatggggcggcaggtagcctagtggttagagcgttggactagtaaccgaaaggttgctggatcaaatcgccgagctgacaaggtaaaaatctatcgttctaaccctgaacaaggcagttaatccactgttcctaccccgtcattgtaaataagcatttctttactgacttgcctagttaaaaaatgtAGAGGACTGCTAAGCACTAATAGGCTCAAACATATGTGTTGCTAGTCAGAATTGACTGCTTATCAGCAACTGATTTGATTGAGCTGATTTGAGAGATTATCCTTCTCTTTAGTTTCATGCTGTATGGTGGATATGATGAACAATATGCCAGGATCTCTCTCCTCTGGCTGATAGATACATTATAAGAGCTTCCCCACAGAAAGGTTAGGAGAATCTGAAAAGCTACCATACTAAAGGTTTTTGTTTCCTCTGTCAAATAACCGCATTTCCTGTCTTTTTCTCTGCACTTTGAAAACATATGCAGTCCTAGTGACCTGAATGGTTACTAATAATATAATTTCAAGTCCCTTTAATGGTGTCATATGGGTTTAGACAGACCATTTATGTTGACGATAAAACAAGGTGTTGTTTGGCTCTACTGTTAAAGCATTACTTGTTTCCAGTATCTGTTTACCACCGTTGCTTGTTGTTACATGTGAAGATTCCCTGAATATGTTGTATTTTGGCTGTACCAAAATATGCATAGTAGGGCAGAGACTGGTGGGTATTTGACTTggatgatactgtatgatactgtagtcagtgtgtatgcatgtgttgtAGCGAGCTTATTATTTTCTTGCACTCTTTATTCAAAGGCAGTCACCCCACGAGACCCAAGACTCCTTTATAAAAGGCTGCTTTGACTGTTTGTATATACTTCTTACGACAATGGTTGTGTTGTTAATCTTGGATTGTGGAAAATAGGAATGTGTGATGTCAAAATGCTATGCATTAAAAACCAATGAAACCTTAA
>TU140662
CTTACATTCTCATACTTTTTTTCtgtcgggccgggcgcagtgcgcgctaaccaagatggccaggtgcacggtgtttcctctaacacattggtgcggctgggttgggttggaggcgcgctgtgttaagaagcagtgtgggttgtgtttcggaggaagcaGGGCTTtcgagttgtagcgatgagacaagatggaAAGGCAACCAAAGTGGGTCTTAGCTTTGGgtatgaccagtgagatatacctgtttgagcgcgtgctacgggtgggtgttgttatgttgatcagtgagctgagataaggcggagctttacctagcaaagacttatagatgacctggagccagtgggtctggcgacgaatatgtagcgagggccaaccGACGAGAGCATACCAGTTGCAGTGGtaggtggtataaggggctttggttaCAAAGcggatggtactgtgatagactgcatccagtttactGAGTAGGTGACGCAACATAGAATGCCTTGTGGAGATTGAGCAATGGAGAGTTGGCCCACATCAGCCCAAAGGTTGTGGTGCTGTGGGTGGGCACCAATAATCATGGTCACACTGCAGAGCAGATCTGTGGAGGCATCATGGCCATAGTCCAACTCATCAAAGACGAGCTGACTTGCAGAGGACATACTGATAAATATCTCTGACACTGTGATTCTGTAGCCGCTGATGTTGTGACTTCCTACAAGCCTCTCGGGCTGGTGTTTACTCAACACTCGTTGCTGTGGGATTAATATATAAGTGCCTTCTCAGAGAAGCTTGTTAGACATTCCTTTTGGCTTCTGTTCTGGAGATGTTCTCTGTGAATTCTTGTAATAAACTGAAATGATTTAGATTAATATGATTGACTGCTCTCCCTGTTGTTCACCTCAAAAATCCCCTTTGCAACCATTAACCTTTTTGATAACACAAACTTAAATTATGAACTGCATACTTTATGGACTCCATTATCATTGCTAACCACAGCAACGAGTGGGCTGGAAGAAAAGCCTGCACTAAAGGCTTTCTAAAACCAGGGTTggtaaccactgcaccactccatTCTATTGGACCATAatgtatggggcggcaggtagcctagtggttagagcgttggactagtaaccgaaaggttgctggatcaaatcgccgagctgacaaggtaaaaatctatcgttctaaccctgaacaaggcagttaatccactgttcctaccccgtcattgtaaataagcatttctttactgacttgcctagttaaaaaatgtAGAGGACTGCTAAGCACTAATAGGCTCAAACATATGTGTTGCTAGTCAGAATTGACTGCTTATCAGCAACTGATTTGATTGAGCTGATTTGAGAGATTATCCTTCTCTTTAGTTTCATGCTGTATGGTGGATATGATGAACAATATGCCAGGATCTCTCTCCTCTGGCTGATAGATACATTATAAGAGCTTCCCCACAGAAAGGTTAGGAGAATCTGAAAAGCTACCATACTAAAGGTTTTTGTTTCCTCTGTCAAATAACCGCATTTCCTGTCTTTTTCTCTGCACTTTGAAAACATATGCAGTCCTAGTGACCTGAATGGTTACTAATAATATAATTTCAAGTCCCTTTAATGGTGTCATATGGGTTTAGACAGACCATTTATGTTGACGATAAAACAAGGTGTTGTTTGGCTCTACTGTTAAAGCATTACTTGTTTCCAGTATCTGTTTACCACCGTTGCTTGTTGTTACATGTGAAGATTCCCTGAATATGTTGTATTTTGGCTGTACCAAAATATGCATAGTAGGGCAGAGACTGGTGGGTATTTGACTTggatgatactgtatgatactgtagtcagtgtgtatgcatgtgttgtAGCGAGCTTATTATTTTCTTGCACTCTTTATTCAAAGGCAGTCACCCCACGAGACCCAAGACTCCTTTATAAAAGGCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035623.1 False 2129 mRNA 0.43 2 21553518 21555867
TU140662 True 1949 lncRNA 0.44 2 21553635 21555804
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110534425 LOC106605569 coding downstream 174495 21376426 ~ 21379023 (-)
LOC110537544 LOC106605712 coding downstream 204636 21322013 ~ 21348882 (-)
LOC110509793 LOC106576373 coding downstream 479313 21064067 ~ 21074205 (-)
LOC110537483 LOC106605857 coding downstream 864663 20673776 ~ 20688855 (-)
LOC110537475 LOC106605848 coding downstream 880240 20668568 ~ 20673278 (-)
LOC118938339 LOC106605559 coding upstream 22282 21578149 ~ 21586856 (-)
LOC110534443 LOC106605563 coding upstream 31111 21586978 ~ 21594470 (-)
LOC118944069 LOC106605559 coding upstream 39369 21595236 ~ 21596535 (-)
LOC110534450 LOC106605556 coding upstream 75523 21631390 ~ 21633645 (-)
cnfn LOC106605555 coding upstream 89427 21645294 ~ 21647486 (-)
G121756 NA non-coding downstream 6481 21490267 ~ 21547037 (-)
G121754 NA non-coding downstream 68019 21483135 ~ 21485499 (-)
G121739 NA non-coding downstream 90247 21463050 ~ 21463271 (-)
G121575 NA non-coding downstream 118325 21383008 ~ 21435193 (-)
G121584 NA non-coding downstream 130127 21408505 ~ 21423391 (-)
G121826 NA non-coding upstream 73901 21629768 ~ 21663939 (-)
G121848 NA non-coding upstream 112352 21668219 ~ 21671696 (-)
G121851 NA non-coding upstream 116921 21672788 ~ 21673005 (-)
G121847 LOC106605554 non-coding upstream 118087 21673954 ~ 21676881 (-)
G121863 NA non-coding upstream 127597 21683464 ~ 21683681 (-)
G121738 NA other downstream 90488 21462693 ~ 21463030 (-)
G121533 LOC106583873 other downstream 206831 21288616 ~ 21346687 (-)
G121421 LOC106576258 other downstream 494669 21056598 ~ 21058849 (-)
G121208 NA other downstream 925818 20626557 ~ 20627700 (-)
G122733 LOC106592382 other upstream 240640 21796507 ~ 21812432 (-)
G122761 LOC106578847 other upstream 295566 21851433 ~ 21856413 (-)
G122829 LOC106605673 other upstream 470432 22026299 ~ 22027717 (-)
LOC110537842 NA other upstream 564713 22120579 ~ 22157534 (-)
G122972 NA other upstream 820286 22376153 ~ 22378160 (-)

Expression

LOC110537611 Expression in all Baseline Samples

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LOC110537611 Expression in each Bioproject

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LOC110537611 Expression in each Sample
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Co-expression Network