LOC110537595 (LOC106605558)


Basic Information

Item Value
gene id LOC110537595
gene name LOC106605558
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21555905 ~ 21570363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941753.1
CCAAATCTAGACATGAGGAGACAGACAAAGTGATGAGCTCAGAAGACTCCAACCCCGCCGCCACACCCACTCCTGGCGTGGACACCCAGGGAGATGGGCGATGGATGTCTTTGCATAACCACTTTGTGTCTAACAGCAAGGACAAGGAACCTGATGTCCTGTTTGTAGGAGACTCTCTTGTCCAGCTCTTGTACCAGTTTGAGGTGTGGCGAGacctgttttctcctctccacgCTCTCAACTTTGGGGTGGGAGGTGATGCAACACAGCATGTCTTGTGGAGATTGAGCAATGGAGAGTTGGGCCACATCAGCCCAAAGGTTGTGGTGCTGTGGGTGGGCACCAATAATCATGGTCACACTGCAGAACAGATCTGTGGAGGCATCATGGCCATAGTCCAACTCATCAAGGACAAGCTGCCGAAGGCTTACACTCTTGTGCTGGGAGTGCTGCCCAGGGGTAAGATGCCCAACTCCCTACGGGAGAGGAATGCCCAGGTCAACAAGCTGGTCCAGGAGgctgtgtcctctctcccccacGCCTCCCTCCTCAACGTGGACCCTGGCTTTGTGCACTCGGACGGCAGCATCTCCCACCAGGACCTGTATGACTACCTCCACCTCACCCCCCAGGGCTACCAGGCTGTGTGCCAGCCGCTACATGCCCACCTCAAGGGCCTGCTGGAGAAACAGGCTGAAAACTGAAGGCCAAAGACCAACTGATGGCCAATGACCCACTCACTACATCAGAGGtacaaaccctggtcctggagagccaCATGAGTACAGGCTTTTAGCACATTCACTACACTTTTTATTTAGTATTTTAGTACAGCCTTTTGTTCCATCCCATGATTTCAAATAATGATGTAGtccttgattagttgaatcatgTTGAATGCTGGGCTGGAAGAAAAGCCTTCTCTTGAAAGGCTTTCCAGAACCAACGTTGGTAACCACTGCACTACTCTATATTGGGACTATATTGTAACTTACCACCAAAATGGCTGAGTAGAGGACCATTAAGCACTAATAGGATCAAACATCTGTGTTGCTAGTCAGATTTGACCGCTTATCAGCAACTGATTTGATTGAGCTGATTTGAGAGATTATCCTTCTCTTTAGTTTCATGCTGTATGGTGGATATGATGAACAATATGCCAGGATCTCTCTCCTCTGGCTGATAGATACATTATAAGAGCTTCCCCACAGAAAGGTTAGGAGAATCTGAAAAGCTACCATACTAAAGGTTTTTGTTTCCTCTGTCAAAATACCCACATTTCCTGTCTTTTTCTCTTAACTTTGAAAACATAAACAGTCCTATTGATCTGATTGGTTATTAATAGTATCATTTAAAATCCCTTTAATGGTGTCATGTGTTTAGACAGAGACCATTTATGTTGACAATGCAACAAGGTGTCACTTGGCCAGTTGGCTCCACTGTTAAAGCATTTTGTTTCCGGTATCTGTTTACCACCATAACTTTTTTTGTTTCTTGTGAAGATTTCCCCGGAATATGTCTTATTTTGGCTGTGCAAATATGGAGAATGAAAGGGAAGGGTATGGTATATTTGGAGTGAATGATGAGGGAATTTCAATGTAGCGCTGAGACTGGTGGGTATTTGGCTTGGCTATGATATGATACTACAGTTGGTGTGTATGGATGTGTTGTAGCTAGCTTATACTCTTTATTCAAAGGCAGTCACCACACGAGACCCAAGACTCCCTATAAAAGGCTGCTTTGACTGTTTGTGTATACTGCCTGTGTAGTCTCCTACCTGCCTCTGTATCTTGAATGTTGATTGTGGAAAATCTGAATATGTGATGTCAAAATGCAATGCATTAAAACCAATGAAAGCTTA
>XM_021623757.2
GACATGAGGAGGTAGGCTAGATTTTATGCGCAACTATAATTCCCTTTGGCAGTCACGTTGATAGCCGTAATTTACTGTGAAAATCGTGTTTTAGGGAGGTATTCATACACATTACTACTTATATGCGTATACATATTACTAGACTGAAAACAAAACGGTATTTTACTGAAGTAGCTCACATATGAGTGGTCAATGGTACATTCTGTAGTTACTTGAAATGTTACTTTCAGCAACGTCAGGCGGACCAAACCACCATTACGACAGACAAAGTGATGAGCTCAGAAGACTCCAACCCCGCCGCCACACCCACTCCTGGCGTGGACACCCAGGGAGATGGGCGATGGATGTCTTTGCATAACCACTTTGTGTCTAACAGCAAGGACAAGGAACCTGATGTCCTGTTTGTAGGAGACTCTCTTGTCCAGCTCTTGTACCAGTTTGAGGTGTGGCGAGacctgttttctcctctccacgCTCTCAACTTTGGGGTGGGAGGTGATGCAACACAGCATGTCTTGTGGAGATTGAGCAATGGAGAGTTGGGCCACATCAGCCCAAAGGTTGTGGTGCTGTGGGTGGGCACCAATAATCATGGTCACACTGCAGAACAGATCTGTGGAGGCATCATGGCCATAGTCCAACTCATCAAGGACAAGCTGCCGAAGGCTTACACTCTTGTGCTGGGAGTGCTGCCCAGGGGTAAGATGCCCAACTCCCTACGGGAGAGGAATGCCCAGGTCAACAAGCTGGTCCAGGAGgctgtgtcctctctcccccacGCCTCCCTCCTCAACGTGGACCCTGGCTTTGTGCACTCGGACGGCAGCATCTCCCACCAGGACCTGTATGACTACCTCCACCTCACCCCCCAGGGCTACCAGGCTGTGTGCCAGCCGCTACATGCCCACCTCAAGGGCCTGCTGGAGAAACAGGCTGAAAACTGAAGGCCAAAGACCAACTGATGGCCAATGACCCACTCACTACATCAGAGGtacaaaccctggtcctggagagccaCATGAGTACAGGCTTTTAGCACATTCACTACACTTTTTATTTAGTATTTTAGTACAGCCTTTTGTTCCATCCCATGATTTCAAATAATGATGTAGtccttgattagttgaatcatgTTGAATGCTGGGCTGGAAGAAAAGCCTTCTCTTGAAAGGCTTTCCAGAACCAACGTTGGTAACCACTGCACTACTCTATATTGGGACTATATTGTAACTTACCACCAAAATGGCTGAGTAGAGGACCATTAAGCACTAATAGGATCAAACATCTGTGTTGCTAGTCAGATTTGACCGCTTATCAGCAACTGATTTGATTGAGCTGATTTGAGAGATTATCCTTCTCTTTAGTTTCATGCTGTATGGTGGATATGATGAACAATATGCCAGGATCTCTCTCCTCTGGCTGATAGATACATTATAAGAGCTTCCCCACAGAAAGGTTAGGAGAATCTGAAAAGCTACCATACTAAAGGTTTTTGTTTCCTCTGTCAAAATACCCACATTTCCTGTCTTTTTCTCTTAACTTTGAAAACATAAACAGTCCTATTGATCTGATTGGTTATTAATAGTATCATTTAAAATCCCTTTAATGGTGTCATGTGTTTAGACAGAGACCATTTATGTTGACAATGCAACAAGGTGTCACTTGGCCAGTTGGCTCCACTGTTAAAGCATTTTGTTTCCGGTATCTGTTTACCACCATAACTTTTTTTGTTTCTTGTGAAGATTTCCCCGGAATATGTCTTATTTTGGCTGTGCAAATATGGAGAATGAAAGGGAAGGGTATGGTATATTTGGAGTGAATGATGAGGGAATTTCAATGTAGCGCTGAGACTGGTGGGTATTTGGCTTGGCTATGATATGATACTACAGTTGGTGTGTATGGATGTGTTGTAGCTAGCTTATACTCTTTATTCAAAGGCAGTCACCACACGAGACCCAAGACTCCCTATAAAAGGCTGCTTTGACTGTTTGTGTATACTGCCTGTGTAGTCTCCTACCTGCCTCTGTATCTTGAATGTTGATTGTGGAAAATCTGAATATGTGATGTCAAAATGCAATGCATTAAAACCAATGAAAGCTTA
>XM_021623748.2
GAAGTAGCTCACATATGAGTGGTCAATGGTACATTCTGTAGTTACTTGAAATGTTACTTTCAGCAACGTCAGGCGGACCAAACCACCATTACGGTATTGTAAAACAATAATAAATGTTAGCTATTCAGCGATCTCATCTATTAATATGAAAAAGTCTGAACGCCGGTATGTTGATGCACCACATTGCCAATGCATCATTGACAGACAAAGTGATGAGCTCAGAAGACTCCAACCCCGCCGCCACACCCACTCCTGGCGTGGACACCCAGGGAGATGGGCGATGGATGTCTTTGCATAACCACTTTGTGTCTAACAGCAAGGACAAGGAACCTGATGTCCTGTTTGTAGGAGACTCTCTTGTCCAGCTCTTGTACCAGTTTGAGGTGTGGCGAGacctgttttctcctctccacgCTCTCAACTTTGGGGTGGGAGGTGATGCAACACAGCATGTCTTGTGGAGATTGAGCAATGGAGAGTTGGGCCACATCAGCCCAAAGGTTGTGGTGCTGTGGGTGGGCACCAATAATCATGGTCACACTGCAGAACAGATCTGTGGAGGCATCATGGCCATAGTCCAACTCATCAAGGACAAGCTGCCGAAGGCTTACACTCTTGTGCTGGGAGTGCTGCCCAGGGGTAAGATGCCCAACTCCCTACGGGAGAGGAATGCCCAGGTCAACAAGCTGGTCCAGGAGgctgtgtcctctctcccccacGCCTCCCTCCTCAACGTGGACCCTGGCTTTGTGCACTCGGACGGCAGCATCTCCCACCAGGACCTGTATGACTACCTCCACCTCACCCCCCAGGGCTACCAGGCTGTGTGCCAGCCGCTACATGCCCACCTCAAGGGCCTGCTGGAGAAACAGGCTGAAAACTGAAGGCCAAAGACCAACTGATGGCCAATGACCCACTCACTACATCAGAGGtacaaaccctggtcctggagagccaCATGAGTACAGGCTTTTAGCACATTCACTACACTTTTTATTTAGTATTTTAGTACAGCCTTTTGTTCCATCCCATGATTTCAAATAATGATGTAGtccttgattagttgaatcatgTTGAATGCTGGGCTGGAAGAAAAGCCTTCTCTTGAAAGGCTTTCCAGAACCAACGTTGGTAACCACTGCACTACTCTATATTGGGACTATATTGTAACTTACCACCAAAATGGCTGAGTAGAGGACCATTAAGCACTAATAGGATCAAACATCTGTGTTGCTAGTCAGATTTGACCGCTTATCAGCAACTGATTTGATTGAGCTGATTTGAGAGATTATCCTTCTCTTTAGTTTCATGCTGTATGGTGGATATGATGAACAATATGCCAGGATCTCTCTCCTCTGGCTGATAGATACATTATAAGAGCTTCCCCACAGAAAGGTTAGGAGAATCTGAAAAGCTACCATACTAAAGGTTTTTGTTTCCTCTGTCAAAATACCCACATTTCCTGTCTTTTTCTCTTAACTTTGAAAACATAAACAGTCCTATTGATCTGATTGGTTATTAATAGTATCATTTAAAATCCCTTTAATGGTGTCATGTGTTTAGACAGAGACCATTTATGTTGACAATGCAACAAGGTGTCACTTGGCCAGTTGGCTCCACTGTTAAAGCATTTTGTTTCCGGTATCTGTTTACCACCATAACTTTTTTTGTTTCTTGTGAAGATTTCCCCGGAATATGTCTTATTTTGGCTGTGCAAATATGGAGAATGAAAGGGAAGGGTATGGTATATTTGGAGTGAATGATGAGGGAATTTCAATGTAGCGCTGAGACTGGTGGGTATTTGGCTTGGCTATGATATGATACTACAGTTGGTGTGTATGGATGTGTTGTAGCTAGCTTATACTCTTTATTCAAAGGCAGTCACCACACGAGACCCAAGACTCCCTATAAAAGGCTGCTTTGACTGTTTGTGTATACTGCCTGTGTAGTCTCCTACCTGCCTCTGTATCTTGAATGTTGATTGTGGAAAATCTGAATATGTGATGTCAAAATGCAATGCATTAAAACCAATGAAAGCTTA
>XM_021623765.2
TACATTCTGTAGTTACTTGAAATGTTACTTTCAGCAACGTCAGGCGGACCAAACCACCATTACGGTATTGTAAAACAATAATAAATGTTAGCTATTCAGCGATCTCATCTATTAATATGAAAAAGTCTGAACGCCGACAGACAAAGTGATGAGCTCAGAAGACTCCAACCCCGCCGCCACACCCACTCCTGGCGTGGACACCCAGGGAGATGGGCGATGGATGTCTTTGCATAACCACTTTGTGTCTAACAGCAAGGACAAGGAACCTGATGTCCTGTTTGTAGGAGACTCTCTTGTCCAGCTCTTGTACCAGTTTGAGGTGTGGCGAGacctgttttctcctctccacgCTCTCAACTTTGGGGTGGGAGGTGATGCAACACAGCATGTCTTGTGGAGATTGAGCAATGGAGAGTTGGGCCACATCAGCCCAAAGGTTGTGGTGCTGTGGGTGGGCACCAATAATCATGGTCACACTGCAGAACAGATCTGTGGAGGCATCATGGCCATAGTCCAACTCATCAAGGACAAGCTGCCGAAGGCTTACACTCTTGTGCTGGGAGTGCTGCCCAGGGGTAAGATGCCCAACTCCCTACGGGAGAGGAATGCCCAGGTCAACAAGCTGGTCCAGGAGgctgtgtcctctctcccccacGCCTCCCTCCTCAACGTGGACCCTGGCTTTGTGCACTCGGACGGCAGCATCTCCCACCAGGACCTGTATGACTACCTCCACCTCACCCCCCAGGGCTACCAGGCTGTGTGCCAGCCGCTACATGCCCACCTCAAGGGCCTGCTGGAGAAACAGGCTGAAAACTGAAGGCCAAAGACCAACTGATGGCCAATGACCCACTCACTACATCAGAGGtacaaaccctggtcctggagagccaCATGAGTACAGGCTTTTAGCACATTCACTACACTTTTTATTTAGTATTTTAGTACAGCCTTTTGTTCCATCCCATGATTTCAAATAATGATGTAGtccttgattagttgaatcatgTTGAATGCTGGGCTGGAAGAAAAGCCTTCTCTTGAAAGGCTTTCCAGAACCAACGTTGGTAACCACTGCACTACTCTATATTGGGACTATATTGTAACTTACCACCAAAATGGCTGAGTAGAGGACCATTAAGCACTAATAGGATCAAACATCTGTGTTGCTAGTCAGATTTGACCGCTTATCAGCAACTGATTTGATTGAGCTGATTTGAGAGATTATCCTTCTCTTTAGTTTCATGCTGTATGGTGGATATGATGAACAATATGCCAGGATCTCTCTCCTCTGGCTGATAGATACATTATAAGAGCTTCCCCACAGAAAGGTTAGGAGAATCTGAAAAGCTACCATACTAAAGGTTTTTGTTTCCTCTGTCAAAATACCCACATTTCCTGTCTTTTTCTCTTAACTTTGAAAACATAAACAGTCCTATTGATCTGATTGGTTATTAATAGTATCATTTAAAATCCCTTTAATGGTGTCATGTGTTTAGACAGAGACCATTTATGTTGACAATGCAACAAGGTGTCACTTGGCCAGTTGGCTCCACTGTTAAAGCATTTTGTTTCCGGTATCTGTTTACCACCATAACTTTTTTTGTTTCTTGTGAAGATTTCCCCGGAATATGTCTTATTTTGGCTGTGCAAATATGGAGAATGAAAGGGAAGGGTATGGTATATTTGGAGTGAATGATGAGGGAATTTCAATGTAGCGCTGAGACTGGTGGGTATTTGGCTTGGCTATGATATGATACTACAGTTGGTGTGTATGGATGTGTTGTAGCTAGCTTATACTCTTTATTCAAAGGCAGTCACCACACGAGACCCAAGACTCCCTATAAAAGGCTGCTTTGACTGTTTGTGTATACTGCCTGTGTAGTCTCCTACCTGCCTCTGTATCTTGAATGTTGATTGTGGAAAATCTGAATATGTGATGTCAAAATGCAATGCATTAAAACCAATGAAAGCTTA

Function

NR:

description
platelet-activating factor acetylhydrolase IB subunit gamma-like isoform X1

GO: NA

KEGG:

id description
K16795 PAFAH1B2_3; platelet-activating factor acetylhydrolase IB subunit beta/gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941753.1 False 1861 mRNA 0.46 6 21555905 21570363
XM_021623757.2 False 2101 mRNA 0.45 6 21555914 21570363
XM_021623748.2 False 2041 mRNA 0.45 6 21556081 21570363
XM_021623765.2 True 1977 mRNA 0.45 6 21556110 21570363

Neighbor

gene id symbol gene type direction distance location
LOC118938333 LOC106605563 coding upstream 8867 21532987 ~ 21547038 (+)
LOC118944067 LOC106597946 coding upstream 22892 21531248 ~ 21533013 (+)
LOC110534436 LOC106605563 coding upstream 25012 21512340 ~ 21530893 (+)
LOC110537581 LOC106605559 coding upstream 64547 21477642 ~ 21491358 (+)
LOC110537588 NA coding upstream 144398 21395164 ~ 21411507 (+)
LOC110537622 LOC106605554 coding downstream 101127 21671490 ~ 21676920 (+)
LOC110514317 LOC106578808 coding downstream 127932 21698295 ~ 21704763 (+)
LOC110537629 LOC106578808 coding downstream 134901 21705264 ~ 21708361 (+)
LOC110537775 LOC106605724 coding downstream 166386 21736749 ~ 21742169 (+)
LOC110537646 LOC106574911 coding downstream 186930 21757293 ~ 21804410 (+)
G121616 NA non-coding upstream 7541 21475814 ~ 21548364 (+)
G121624 NA non-coding upstream 10011 21486971 ~ 21545894 (+)
G121618 NA non-coding upstream 91094 21464429 ~ 21464811 (+)
G120646 NA non-coding upstream 175618 21380076 ~ 21380287 (+)
G120641 NA non-coding upstream 179338 21376234 ~ 21376567 (+)
G121676 NA non-coding downstream 16228 21586591 ~ 21594643 (+)
G121726 NA non-coding downstream 95920 21666283 ~ 21667174 (+)
G121727 NA non-coding downstream 97048 21667411 ~ 21667706 (+)
G121732 NA non-coding downstream 102038 21672401 ~ 21672730 (+)
G121861 NA non-coding downstream 112186 21682549 ~ 21682813 (+)
LOC110509768 LOC106576258 other upstream 540014 20990131 ~ 21058856 (+)
erfl3 LOC106576393 other upstream 579706 20900204 ~ 20977481 (+)
G120169 NA other upstream 1136777 20407862 ~ 20419128 (+)
G120259 NA other upstream 1235649 20319739 ~ 20320256 (+)
G121677 NA other downstream 15058 21585421 ~ 21586101 (+)
LOC110537735 LOC106595974 other downstream 250851 21821165 ~ 21825285 (+)
G122030 NA other downstream 446299 22015130 ~ 22018815 (+)
LOC110537939 apoc1 other downstream 772164 22342491 ~ 22346615 (+)
apoc4 NA other downstream 778220 22348543 ~ 22349936 (+)

Expression


Co-expression Network