LOC118938339 (LOC106605559)


Basic Information

Item Value
gene id LOC118938339
gene name LOC106605559
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21578149 ~ 21586856 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941772.1
CATGACCATGGTGAAAGTAATTGGAGCCCAGCCAATACTGAACAAGAGATTCTCTCTGACCTGTGGCACCGCTGGAACGGTTTACTCCATTCAGTGGATGAGGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACATTCAACTCTGTCCAGCATTCTGACAATGGAGACTATCAGTGTTCTGCCTCCAACCCCCTCAGCAACATGACCAGCCCAGAATACAGACTGATCGTCAACTATGGACCGGAGAAGCCTATAATAACAGGACCAGCATTAGGAGAAACAGGACACAGCGTGACcttcaactgctctgcctcctctcagcctctcagccagttcagctggttcttcaatGGATCCCAGGTGGCGACTGGCTCAGTGTATGAGACGGGCCCACTGACCTTAGCCAGTCATGGGGAATACACCTGTGTGGCCTTCAACAACATCACTTGCAGAAACAGCACTGTCTCCAAGATGCTCACTATTGTTGCAACAGTGACCGTGACCATGGTGAAAGTAATTGGAGCCCAGCCAATCCTGAAGGAGAGATTCTCTCTGACCTGTGGCACCGCTGGAACGGTTTACTTCATTCAGTGGATGAAAAACGGCTGGCCTCTGTATGTTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACATTCAACTCATTACAGCATTCTGACAATGGAGACTATCAGTGTTCTGCCTCCAACCCCCTCAGCAACATGACCAGCCCAGAATACAGACTGATCGTCAACTATGGACCGGAGATGCCAATAATAACAGGACCAGCATTAGGAGAAACAGGACACAGCGTGACCTTCAACTGCTCAGcttcctctcagcctctcagccagttcagctggttcttcaatGGCTCCCAGGTGGCAACTGGCTCAAAGTATGAGACTGGCCCACTGACCTTAGCCAGTCATGGGAAATACACCTGTGTGGCCTTCAACAACATCACTTGCAGAAACAGCACTGTCTCCAAGATGCTCACTATTGTTGCGCCAATAACCTCAGTGTCCATAAGCACCGGTGGAAACCAGGCGATAGAGGGTGACTCCTTTACAATGACTTGCAATATCGTTGGTGATCCTAGCTCCATTCACTGGTGGAAGAACCTCACGTTAGTGCATCTGGATAACAGAACCCACGTCTCTTTCGACAACAGAACACTGACCTTCAACCCTGTCCAGTATTCTTCCTATGGAGAATATCAGTGTATGGCCAGAAATAGTATAAGCAACAGAACTAGCACCCGCTACACACTCCTAGTGAATTATGGACCCAAGCAACCTGTGATAGCTGGTGCACCCATTGCCGAAACAGAACAAAGAGTGACCTtcaactgctcagcctcctctcagcctctcagccagttcagctggttcttcaatGGCTCCCGGGTGGCAACAGGCTCAGAGTATGAGACGGGCCCACTGACCTTAGCCAGTCATGGGGAGTATACTTGTGTGGCCTTCAACAACGCCACTGGCAGAAACAGCACTGTCTCCAAGATGCTCACCGTCATTGAGGCTATAAAGTCGGTGATGGTGAAACGAAACAAAACGCCGATATCATCtgacaacctaaccctgacctgtGATGTCACCGGGCGCTATGACACCATCTACTGGATGAAGGACAACCTGCCTCTGGTCCTGAACAACACCTTGAACTCTGACATCACCATCTCTAACAACTCTTTGCACTTCAGTCCAGTCAAGGTGTCTAACGATGGAAACTATCAGTGCGTCGCCACCAACCTCCTTCGCCCACACACCAGCCCTAAATACCAGCTATTGGTGAACTATGGCCCTTTGAGTGTGAACGTCTCTGGCCCAGGCTTAGTGGTGATTGGCTCAGTAATCCCTGTCAGTCTGAAGTGCTCAGCCGACTCCCGGCCAACCAGCGAGTACCGGTGGAAATACAACAACCAACCATTGACCGCGACTGGTCCTTTGATGGCTGTAGGTGTCTCCTTGAAAAATGCAGGGATTTACACCTGTGTGGCCAAGAACTCTCTAACTAACATCTCAATGTCCAAGAACATTAGTCTGGATGTCACTGgcCACTCGCCTGCCCCTCCATTCCAGTCCAGACTTGGTCTGATGTTGATGGGCCTtgcagctctctctctgcctctgatcAACCACTGAGACTACCACACTGCATGTCTGCTGGCTGGGAGCCAATCACTCCCTTCCCTCTACCCTCACTGACTCCCCTCACTGATCTGAAAAAGGACTGGATAGAAATAAGTGGTATTGTCAATATTGTAATTGCCCAATCGTACCATCATAGGGCTGAGTTTAGTGTGCTTAGCTCTTTTCCAATGCTTTTAGATTGTGAGGAGAGAGTCAACAAGAGGTCAGAAGGGAGGGGCCTATCCCCATAGAATAGAACCCACCTCAACAGTTTGTTTTTATGTCAATCATCTCTATAAACTGATATTCGTCTTCCACATGGTAATTGAAGGCG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941772.1 True 2522 mRNA 0.49 9 21578149 21586856

Neighbor

gene id symbol gene type direction distance location
LOC110537611 NA coding downstream 22282 21553518 ~ 21555867 (-)
LOC110534425 LOC106605569 coding downstream 199126 21376426 ~ 21379023 (-)
LOC110537544 LOC106605712 coding downstream 229267 21322013 ~ 21348882 (-)
LOC110509793 LOC106576373 coding downstream 503944 21064067 ~ 21074205 (-)
LOC110537483 LOC106605857 coding downstream 889294 20673776 ~ 20688855 (-)
LOC110534443 LOC106605563 coding upstream 122 21586978 ~ 21594470 (-)
LOC118944069 LOC106605559 coding upstream 8380 21595236 ~ 21596535 (-)
LOC110534450 LOC106605556 coding upstream 44534 21631390 ~ 21633645 (-)
cnfn LOC106605555 coding upstream 58438 21645294 ~ 21647486 (-)
LOC110537643 LOC106605567 coding upstream 126149 21713005 ~ 21721635 (-)
G121756 NA non-coding downstream 31112 21490267 ~ 21547037 (-)
G121754 NA non-coding downstream 92650 21483135 ~ 21485499 (-)
G121739 NA non-coding downstream 114878 21463050 ~ 21463271 (-)
G121584 NA non-coding downstream 154758 21408505 ~ 21423391 (-)
G121826 NA non-coding upstream 42912 21629768 ~ 21663939 (-)
G121848 NA non-coding upstream 81363 21668219 ~ 21671696 (-)
G121851 NA non-coding upstream 85932 21672788 ~ 21673005 (-)
G121847 LOC106605554 non-coding upstream 87098 21673954 ~ 21676881 (-)
G121863 NA non-coding upstream 96608 21683464 ~ 21683681 (-)
G121738 NA other downstream 115119 21462693 ~ 21463030 (-)
G121533 LOC106583873 other downstream 231462 21288616 ~ 21346687 (-)
G121421 LOC106576258 other downstream 519300 21056598 ~ 21058849 (-)
G121208 NA other downstream 950449 20626557 ~ 20627700 (-)
G122733 LOC106592382 other upstream 209651 21796507 ~ 21812432 (-)
G122761 LOC106578847 other upstream 264577 21851433 ~ 21856413 (-)
G122829 LOC106605673 other upstream 439443 22026299 ~ 22027717 (-)
LOC110537842 NA other upstream 533724 22120579 ~ 22157534 (-)
G122972 NA other upstream 789297 22376153 ~ 22378160 (-)

Expression

LOC118938339(LOC106605559) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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LOC118938339(LOC106605559) Expression in each Bioproject

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LOC118938339(LOC106605559) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 12.
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Co-expression Network