LOC110534443 (LOC106605563)


Basic Information

Item Value
gene id LOC110534443
gene name LOC106605563
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21586978 ~ 21594470 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961753.1
GTGACCATGACCATGGTGAAAGTCATTGGAGCCCAGCCAATACTGAACGAGAGATTCTCTCTGACCTGTGGCACCGCTGGAACGGTTTACTCCATTCAGTGGATGAGGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACATTATACTCTGTCCAGCATTCTGACAACGGAGACTATCAGTGTTCTGCCTTCAACCCCTTCAGCAACATGACCAGCCCATACTACAAACTGATCGTCAACTATGGACCGGAGATGCCTATAATAACAGGACCAGCATTTGGAGAAACAGGACACAGCGTGACcttcaactgctctgcctcctctcagcctctcagccagttcagctggttcttcaatGGCTCCCAGGTGGCGACCGGCTCAGTGTATGAGACGGGCCCACTGACCTTAGCCAGTCATGGGGAATACACCTGTGTGGCCTTCAACAACATCACTTGCAGAAATAGCACTGTCTCAAAGATGCTCACTGTTGTTGCAACAGTGACCGTGACCATGGTGAAAGTAATTGGAGCCCAGCCAATACTGAACGAGAGATTCTCTCTGACCTGTGGCACCGCTGGAACGGTTTACTCCATTCAGTGGATGAAAAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACATTCAACTCATTACAGCATTCTGACAAGGGAGACTATCAGTGTTCTGCCTCCAACCCCTTCAGTAACATGACCAGCCCAGAATACAGACTGATCGTCAACTTTGGACCGGAGTTGCCAATAATAACAGGACCAGCATTAGGAGAAACAGGACACAGCGTGACcttcaactgctctgcctcctctcagcctcccagccagttcagctggttcttcaatGGATCCCAGGTGGCGACTGGCTCAGTGTATGAGACGGGCCCACTGACCTTAGCCTGTCATGGGGAATACACCTGTGTGGCCTTCAACAACATCACTTGCAGAAACAGCACTGTCTCCAAGATGCTCACTGTTGTTGCAACAGTGACCATGACCATGGTGAAAGTCATTGGAGCCCAGCCAATACTGAATGAGAGATTCTCTCTGACCTGTGGCACCGCTGGAACGGTTTACTCCATTCAGTGGATGAGGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACTTTCAACTCTGTCCAGGATTCTGACAACGGAGACTATCAGTGTTCTGCCTCCAACCCCCTCAGCAACATGACCAGCACAGAATACAGACTGATCGTCAACTATGGACCGGAGATGCCTATAATAACAGGACCAGCATTTGGAGAAACAGGACACAGCGTGACcttcaactgctctgcctcctctcAGCCTTTCAGCcagttcagctggttcttcaatGGCTCCCAGGTGGCGACTGGCTCAGTGTATGAGATGGGCCCACTGACCTTAGCCTGTCATGGGGAATACACTTGTGTGGCCTTCAACAACATCACTTGCAGAAATAGCACTGTCTCAAAGATGCTCACTGTTGTTGCAACAGTGACCGTGACCATGGTGAAAGTCATTGGAGCCCAGCCAATCCTGAACGAGAGATTCTTTCTGACCTGTGGCACCGCTGGAACGGTTTACTCCATTCAGTGGATGAAAAACGTCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACATTCAACTCATTACAGCATTCTGACAATGGAGACTATCAGTGTTCTGCCTCCAACCCCCTCAGCAACATGACCAGCCCAGAATACAGACTGATCGTCAACTATGGACCGGAGATGCCTATAATAACAGGACCAGCATTAGGAGAAACAGGACACAGCGTGACCTTCAACTGCTCAGcttcctctcagcctctcagccagttcagctggttcttcaatGGATCCCAGGTGGCGACTGGCTCAGTGTATGAGACGGGCCCACTGACCTTAGCCTGTCATGGGGAATACACCTGTGTGGCCTTCAACAACATCACTTGCAGAAACAGCACTGTCTCCAAGATGCTCACTGTTGTTGCAACAGTGACCATGACCATGGTGAAAGTCATTGGAGCCCAGCCAATCCTGAATGAGAGATTCTCTCTGACCTGTGACACTGCTGGAACCATTTACTCCATTCACTGGATGAAGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACTACAATACACTGACCTTCAACTCTGTCCAGGATTCTGACAACGGAGACTATCAGTGTTCTGCCTCCAACACCCTCAGCAACATGACCAGCCCAGAATACAGACTGATCGTCAACTATGGACCGGAGATGCCTATAATAACAGGACCAGCATTTGGAGAAACAGGACACAGCGTGACcttcaactgctctgcctcctctcagcctctcagccagttcagctggttcttcaatGGATCCCAGGTGGCGACTGGCTCAGTGTATGAGATGGGCCCACTGACCTTAGCCTGTCATGGGGAATACACTTGTGTGGCCTTCAACAACATCACTTGTAGAAATAGCACTGTCTCAAAGATGCTCACTGTTGTTGCAACAGTGACCATGACCATGGTGAAAGTCGTTGGAGCCCAGCCAATACTGAAGGAGAGATTCTCTCTGACCTGTGGCACCGCTGGAACGGTTTACTCCATTCAGTGGATGAGGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACATTCAACTCATTACAGCATTCTGACAATGGAGACTATCAGTGTTCTGCCTCCAACCCCCTCAGCAACATGACCAGCCCAGAATACAGACTGATCGTCAACTATGGACCGGAGATACCAATAATAACAGGACCAGCATTAGGAGAAACAGGACACAGCGTGACcttcaactgctctgcctcctctcagcctctcagccagttcagctggttcttcaatGGATCCCAGGTGGCGACTGGCTCAGTGTATGAGACGGGCCCACTGACCTTAGCCTGTCATGGGGAATACACCTGTGTGGCCTTCAACAACATCACTTGCAGAAACAGCACTGTCTCCAAGATGCTCACTGTTGTTGCAACAGTGACCATGACCATGGTGAAAGTCATTGGAGCCCAGCCAATACTGAATGAGAGATTCTCTCTGACCTGTGACACTGCTGGAACCATTTACTCCATTCACTGGATGAAGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACTACAATACACTGACCTTCAACTCTGTCCAGGATTCTGACAACGGAGACTATCAGTGTTCTGCCTCCAACACCCTCAGCAACATGACCAGCCCAGAATACAGACTGATCGTCAACTATGGACCGGAGATGCCTATAATAACAGGACCAGCATTTGGAGAAACAGGACACAGCGTGACcttcaactgctctgcctcctctcagcctctcagccagttcagctggttcttcaatGGATCCCAGGTGGCGACTGGCTCAGTGTATGAGATGGGCCCACTGACCTTAGCCTGTCATGGGGAATACACTTGTGTGGCCTTCAACAACATCACTTGTAGAAATAGCACTGTCTCAAAGATGCTCACTGTTGTTGGTGAGTCAGTAACTGCTGCTTAAAATCAAGGGACTAAAAGTTTATTTA

Function

NR:

description
hemicentin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961753.1 True 3739 mRNA 0.49 14 21586978 21594470
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118938339 LOC106605559 coding downstream 122 21578149 ~ 21586856 (-)
LOC110537611 NA coding downstream 31111 21553518 ~ 21555867 (-)
LOC110534425 LOC106605569 coding downstream 207955 21376426 ~ 21379023 (-)
LOC110537544 LOC106605712 coding downstream 238096 21322013 ~ 21348882 (-)
LOC110509793 LOC106576373 coding downstream 512773 21064067 ~ 21074205 (-)
LOC118944069 LOC106605559 coding upstream 766 21595236 ~ 21596535 (-)
LOC110534450 LOC106605556 coding upstream 36920 21631390 ~ 21633645 (-)
cnfn LOC106605555 coding upstream 50824 21645294 ~ 21647486 (-)
LOC110537643 LOC106605567 coding upstream 118535 21713005 ~ 21721635 (-)
LOC110537847 mrpl17 coding upstream 521179 22114700 ~ 22118083 (-)
G121756 NA non-coding downstream 39941 21490267 ~ 21547037 (-)
G121754 NA non-coding downstream 101479 21483135 ~ 21485499 (-)
G121739 NA non-coding downstream 123707 21463050 ~ 21463271 (-)
G121590 NA non-coding downstream 170031 21416552 ~ 21416947 (-)
G121826 NA non-coding upstream 35298 21629768 ~ 21663939 (-)
G121848 NA non-coding upstream 73749 21668219 ~ 21671696 (-)
G121851 NA non-coding upstream 78318 21672788 ~ 21673005 (-)
G121847 LOC106605554 non-coding upstream 79484 21673954 ~ 21676881 (-)
G121863 NA non-coding upstream 88994 21683464 ~ 21683681 (-)
G121738 NA other downstream 123948 21462693 ~ 21463030 (-)
G121533 LOC106583873 other downstream 240291 21288616 ~ 21346687 (-)
G121421 LOC106576258 other downstream 528129 21056598 ~ 21058849 (-)
G121208 NA other downstream 959278 20626557 ~ 20627700 (-)
G122733 LOC106592382 other upstream 202037 21796507 ~ 21812432 (-)
G122761 LOC106578847 other upstream 256963 21851433 ~ 21856413 (-)
G122829 LOC106605673 other upstream 431829 22026299 ~ 22027717 (-)
LOC110537842 NA other upstream 526110 22120579 ~ 22157534 (-)
G122972 NA other upstream 781683 22376153 ~ 22378160 (-)

Expression

LOC110534443(LOC106605563) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.
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LOC110534443(LOC106605563) Expression in each Bioproject

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LOC110534443(LOC106605563) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
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Co-expression Network