LOC118944069 (LOC106605559)


Basic Information

Item Value
gene id LOC118944069
gene name LOC106605559
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21595236 ~ 21596535 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961756.1
TTCAAATGTGACTCTAAGGGCCAACGCCACTGATCTAGTGGAATTGAACGACACTGCCATGTTCACCTGCTCTGTCTCGTCTGGCACGTCCCTCTCCTACCGCTGGCTGAATGTCAGCTCAGAGGTCACAGCCAGTGACAGAGTTTGGCTTGGTGGTGGGAACAGCACTCTCACCATAATCAGTGTGACACGATATGATGAAGGGCCGTTCAGATGTGATGTCATCAATGGAATCAGCAATGGCACCAGCCAGCCCATTGGCCTCAATGTTAGATATGGCCCAAGTAACCTCACCATGATGGTAGTTCCTGAGATGATCATAGGACATACAGCCTACAAGACGGGATCTGACATCACTCTGTCCTGCTCCGCTCAGTCCAAACCCGCTGTGTCCTACAAGTGGAGGTTTAATGGGACGTTCCTCAACGAGCAAAGCCCACAGCTCAGCCTGCAGAACACGAAGGCGAACCAGACAGGAAGATACTCCTGCTTAGCCTACAACTATGTCACAATCCAATTTGCCAATATAAACACAATGATAAAGATTGTGGAGCCGATATCAGCGGTTTCGTTGAACCGCGATGGGAAGCCACCGATACTGGATCAGTCGTTCACTCTGCGGTGTGAGGTGACTGGACCTGTAGACTACATTCACTGGTTGATGAATGGCCAGCTCATCTCCCTAAATAACAGAACATTCTTCTCTACGGGCAACAACACAATGGTTATCAATCCAATCCAGTTGTCTGACAATGGAGAATATCTCTGTGAGGCCTTTAATGCTGTCAGCAACCTGACCAGCATGACTTTCAAGCTTGTGGTAAACTGTGAGTATTACAAGAGCTGGTCATCTTTGTCTGATAAAAACAATTCAGTGGCCTTGTAG

Function

NR:

description
hemicentin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961756.1 True 886 mRNA 0.48 3 21595236 21596535

Neighbor

gene id symbol gene type direction distance location
LOC110534443 LOC106605563 coding downstream 766 21586978 ~ 21594470 (-)
LOC118938339 LOC106605559 coding downstream 8380 21578149 ~ 21586856 (-)
LOC110537611 NA coding downstream 39369 21553518 ~ 21555867 (-)
LOC110534425 LOC106605569 coding downstream 216213 21376426 ~ 21379023 (-)
LOC110537544 LOC106605712 coding downstream 246354 21322013 ~ 21348882 (-)
LOC110534450 LOC106605556 coding upstream 34855 21631390 ~ 21633645 (-)
cnfn LOC106605555 coding upstream 48759 21645294 ~ 21647486 (-)
LOC110537643 LOC106605567 coding upstream 116470 21713005 ~ 21721635 (-)
LOC110537847 mrpl17 coding upstream 519114 22114700 ~ 22118083 (-)
LOC110537842 NA coding upstream 524044 22120579 ~ 22157534 (-)
G121756 NA non-coding downstream 48199 21490267 ~ 21547037 (-)
G121754 NA non-coding downstream 109737 21483135 ~ 21485499 (-)
G121739 NA non-coding downstream 131965 21463050 ~ 21463271 (-)
G121590 NA non-coding downstream 178289 21416552 ~ 21416947 (-)
G121826 NA non-coding upstream 33233 21629768 ~ 21663939 (-)
G121848 NA non-coding upstream 71684 21668219 ~ 21671696 (-)
G121851 NA non-coding upstream 76253 21672788 ~ 21673005 (-)
G121847 LOC106605554 non-coding upstream 77419 21673954 ~ 21676881 (-)
G121863 NA non-coding upstream 86929 21683464 ~ 21683681 (-)
G121738 NA other downstream 132206 21462693 ~ 21463030 (-)
G121533 LOC106583873 other downstream 248549 21288616 ~ 21346687 (-)
G121421 LOC106576258 other downstream 536387 21056598 ~ 21058849 (-)
G121208 NA other downstream 967536 20626557 ~ 20627700 (-)
G122733 LOC106592382 other upstream 199972 21796507 ~ 21812432 (-)
G122761 LOC106578847 other upstream 254898 21851433 ~ 21856413 (-)
G122829 LOC106605673 other upstream 429764 22026299 ~ 22027717 (-)
G122972 NA other upstream 779618 22376153 ~ 22378160 (-)

Expression


Co-expression Network