LOC110537622 (LOC106605554)


Basic Information

Item Value
gene id LOC110537622
gene name LOC106605554
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21671490 ~ 21676920 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623806.2
AAAGAAGAGAGGAACGCGGGTGAGACTACGAGAAGAGTGTCCTGAGTCTGTGAAGGTGTTTCAGGTGTTCCGCTGTTTTGTTGGTAACAATGGATCACGTCAAGGCAACCACAGATTACTATATTTATGAAGACAACTACAGCTTTTCACCAGAAACAGGCAGTAGCCAATCCAGTGGCGTGCCCTGCAACCAGGATGGCATCATGGACTTCACCCGGAGCTACTCCCCTGTGGTCTACAGCCTGGTGTTTGTGCTGGCGCTGGTGGGTAACATCCTGGTGCTGTGTGTGCTGATGCGCTACCGCACCTCTCAGACAGGCGGGGCCTGCTCCTTCTCCCTCACCGACACCTTCCTGCTCCACCTGGCCGTGTCCGACCTCCTGCTGGCTCTCACGCTGCCCCTGTTCGCCGTCCAGTGGTCCCACCTGTGGCTGTTCGGTGTGGCCGCCTGCAAGATTTCCGGAGCCCTGTTCTCTCTGAACCGCTACAGCGGCATCCTGTTCCTGGCCTGCATCAGCTTCGACCGCTACCTAGCCATCGTCCACGCCGTCAGCACCGGCTGGAAACGCAACTCCTGCCATGCCCAGATTGCCTGTGCCCTCATCTGGACAGTGTGCTTTGGCCTGAGTGGGGTGGACATCGCCTTTAGAcaggtggtggaggtggaagtGGGGCGCTCGGGGGATCATCAGGGCCTGCTGGTGTGCCAGACGGTGTTCCCCCACAGCTCAGTGCAGTGGCAGGTGGGGATGCCGCTAGTCAACTTGGTGCTGGGTTTTGGGCTGCCCCTGCTGGTCATGCTCTACTGCTACATCCGTATCTTCCGCTCCCTTTGCAACGCCTCGCGCCGCCAGAAGAGGAAGTCCCTTCACCTCATCGTCTCCCTGGTGTCCATGTTTGTGCTCTGCTGGGCACCCTACAACTCCTTCCAATTGGCCGAAAGCCTGAAGAAGCTGGGCGTAATTAGTGGAGGCTGCCAGTTTGGCCGCACGGTGGACATCGGGATCCTGGTGTCTGAGAGCATGGGGCTGTCACACTGTGCCCTGAACCCGCTGCTGTATGGCTTTGTGGGGGTGAAGTTTAGGAGGGAGCTGACCAGAATGTGTAAGGGTCTGCTGGGACAGAGGTTCTATCCAGGGATGAACAGATGGGGAGGACAGAGGAAACTTCGGAGGACCACTGGGTCCTTCAGCTCAGTAGAGAGCGAGAACACCTCCCACTTCTCTGTCATGGCGTGAGCCAGCCACGTGCACAGAGAGGGGTCTACCTGTACCCGAgcacctttttgttgttgttctgaacccACAAGTCATCGTAAAGTCGTCAAGTTCACCACCCCCAACCCCCCATCCCATTGGTCTGCCCTGTACAGAGCTTGCGTGTGCCTGGTATCCAAACATGCATGGCTTGGGATGCAGTCACCGGTCGAGTCTGTGTAGCAAGCTACCTAGTTTAaatatcaacagtactgccacagCAGCATAACATTTGATCTGCATCATCATCAATATTTTGTTTGGTCTACATAGCCTACGCGCAGCAGAGAGGCAGAAGACCGAGAGGAGCAGCTGCATTCAGGCTGTACGACCCTCTACGACCCTCTGACCCaactccatcccttcatcccttcgGGTGTTGCACATGTGTGTCAGGGCAGCAGCAACACAGGTAGTCTGGACTTTAGCTAGCCACCATATACTAAAATATCCACACAGGCCACCAGCCAGCCATATACCGTAGCATGAGTTAGAAGAGTATGAATATTATAGTATATAATGAAGTTATTATTTAAGAGCATTGAAGAGAAATCACAAAAAATGCTAGTTAACTATCAGGTTTACATCAATCATCAACACAATGATCAGCTGATAGCCTATCGTCTTTACCCAATGTCAATCATGTGTTTAGGAGGCACTGTAACTAGCGTGCTTACAATTTGAGTGAGTGTGTTGTTGCagaaataaagttttttttttttttttttttatctctacaAAGGCAGGTAGTATGTTATGTATTTAGAGATGTACTTTTTTTAAGGTGGTTGTCACTAGTTATCACAGCCAAAAAGGCTAAATTGGCTctaatgtaaaaatgtatgaaaacaaaaaataactttttggtcttaatttaaggttagggttaagcatAAGGTTAAAAGTGTGGTTAGgggtaaggttaggtttaaaatcagatttgaagaaggggagaaagaggggaatgTGGAGACTGACataaaaagagagaggaagagagaatacaAGACAAAAGGGGGGCAGGGAGTCATGAAAAGACGGAACAGAAATTGGAATGATTGTGAAACTGACAAAATGGGGAAGAAATACAGATGTGCGCATTGTGTCAAAGTGAGGAAAAAACGTATGTTATTTTGTTGTGATTCATTCCTCTGGTGCTTCCTGATAGTTGCCTAGCTCAAAATGATGGTGCTTTTAAAGACCACACCTTCTCAGGACGGGGAATTTTTCATATAGTAGCCTACTTTCGCTATCTTCTTGTAAATACAATGTTGGGGTCATTTTTGTTCATGAGATTCTAGAGTCCATTCAATCGCATAGCCTACCATGTTAACCCCATCTGCCTCTAGTGTTTGGCTTTATGATAAAGTGATGACTATAATTTCAAGGAACtgctaaatagattttttttaaatgtttgataCCCACTCCCTCAAAAGGGCCAAGTCATCACTATATGTGTTACTCATATATTGCCTTGTAGTTTTGAAGGCagcaaatacttttttttttttttttttttttacatttcaaatcCTCGCAGCAATAATTTTTTCTTTAGTTGATTGCTTCATTTTGTCACTTGCTGAAGAGGGGAAACAAAGGTGTAAAGTTATGACAGACATGCAGCTTTACCTATGGCAAACTGTCCACGTGTCCTTTGGTACCAGACTGTTGTTCAACATTTGCTAATTTACCTATTTAGATGAGATTGTTATCAATCAGTCAGCACAACAGATATGTACATAGGATTGTATGCATGTATTTCTATGTTGTAGAAATTTGAGAAAATAGAATAAAACATTGGGGGAAATGTAATTTTCATATCAATAAATAAATGATATGCAAA

Function

NR:

description
C-X-C chemokine receptor type 3-2-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006935 chemotaxis biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004950 chemokine receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623806.2 True 3105 mRNA 0.47 2 21671490 21676920

Neighbor

gene id symbol gene type direction distance location
LOC110537595 LOC106605558 coding upstream 101127 21555905 ~ 21570363 (+)
LOC118938333 LOC106605563 coding upstream 124452 21532987 ~ 21547038 (+)
LOC118944067 LOC106597946 coding upstream 138477 21531248 ~ 21533013 (+)
LOC110534436 LOC106605563 coding upstream 140597 21512340 ~ 21530893 (+)
LOC110537581 LOC106605559 coding upstream 180132 21477642 ~ 21491358 (+)
LOC110514317 LOC106578808 coding downstream 21375 21698295 ~ 21704763 (+)
LOC110537629 LOC106578808 coding downstream 28344 21705264 ~ 21708361 (+)
LOC110537775 LOC106605724 coding downstream 59829 21736749 ~ 21742169 (+)
LOC110537646 LOC106574911 coding downstream 80373 21757293 ~ 21804410 (+)
LOC110537766 LOC106592382 coding downstream 116604 21793524 ~ 21799614 (+)
G121727 NA non-coding upstream 3784 21667411 ~ 21667706 (+)
G121726 NA non-coding upstream 4316 21666283 ~ 21667174 (+)
G121676 NA non-coding upstream 76847 21586591 ~ 21594643 (+)
G121616 NA non-coding upstream 123126 21475814 ~ 21548364 (+)
G121624 NA non-coding upstream 125596 21486971 ~ 21545894 (+)
G121861 NA non-coding downstream 5629 21682549 ~ 21682813 (+)
G121866 NA non-coding downstream 7671 21684591 ~ 21684797 (+)
G121877 NA non-coding downstream 16841 21693761 ~ 21693976 (+)
G121884 NA non-coding downstream 19716 21696636 ~ 21697002 (+)
G121898 NA non-coding downstream 32393 21709313 ~ 21710578 (+)
G121677 NA other upstream 85389 21585421 ~ 21586101 (+)
LOC110509768 LOC106576258 other upstream 655599 20990131 ~ 21058856 (+)
erfl3 LOC106576393 other upstream 695291 20900204 ~ 20977481 (+)
G120169 NA other upstream 1252362 20407862 ~ 20419128 (+)
LOC110537735 LOC106595974 other downstream 144294 21821165 ~ 21825285 (+)
G122030 NA other downstream 339742 22015130 ~ 22018815 (+)
LOC110537939 apoc1 other downstream 665607 22342491 ~ 22346615 (+)
apoc4 NA other downstream 671663 22348543 ~ 22349936 (+)
G122459 LOC106578191 other downstream 1133847 22810767 ~ 22811263 (+)

Expression


Co-expression Network