LOC110514317 (LOC106578808)


Basic Information

Item Value
gene id LOC110514317
gene name LOC106578808
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21698295 ~ 21704763 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941801.1
cctaactgctgttggtggaTGTAAGGAAAACTACAGGCGAATATCCGTCGAATATACAACCTGAAACTAACTTTACCTCGGTGCTAATCTTCTGTCTTCAGatcagagaaggaggagaggagatgagattagATTTAGGGCAGGCGTTTTTAGTCTAAACTATTGAGATGGACTTGCTCCGCGAATTTATTATAACTGAAGCACTATTCTCAGGCCCCGATGTAGCACAACTACCACGGTTGAACGGTAGGTTAAGCATGCAAACTAGAACTGTCTCCAACACTTAATGTTTGGACCTTGGAGCTCATATGTATAGCAGCGCCGCCTACCAATACAGAAGTGGATACAAGTTTCCCCCGAAGTAACCACAGCTGTTGATACCTGCAGTATATCtgccaacctggtctcagagcattacgtattattctgtatgttcCGAAGCAATCCATTTAgtatgatttttatttatttaatttttatttaacctttatttaactaggcaagtcagttaagaacaattttttatttacaatgatggcctacctcgGCGCCACTTGTGCGCCGgtctatgggactccaaatcacggccggatgatactgtatgttacgtttcgcatgacagacatggaTTTGGACCTGGGAGGGATATTTCTAGAGAATAGCACCTATAACTACGATGGGGACTATGTTTATAAAGAGGAATGCTCCCCTGAAGATGGCGTTGGAGTGCGTTTTGGCACGGTGTTCCTCCCAATGCTCTACTCCCTGACGCTGGTCCTGGGGCTAGTGGGTAACGTGTTGGTCCTGGTGGTTCTGGTCCAGAGGAGGCGGAGCTGGAGCGTGACGGACACCTTCATCCTGCACCTGGGCTTGGCCGACACCCTGCTGCTGGTCACCCTGCCCCTCTGGGCTGTTCAGGCCACTGGGGAATGGAGCTTCGGGACCCCCCTCTGCAAGATCACTGGAGCCATGTTCACAatCAACTTTTACTGTAGCATCTTCCTGCTGGCCTGCATCATTCTGGACCGCTACCTGTCCGTGGTTCACGCAGTCCAGATGTACTCTCGCAGGAAGCCCTGGATGGTGCAGGCCAGCTGCCTGTCCGTGTggctcctctccatcctcctctccatcccagaCTGGCACTTCCTGGAGTCTGTGAGACGAGACAAACAGGAGTGTGTCCAAAACTACccgtctctctcccagtctgggtTTGACTGGCGTCTGGTCTCCCGCCTGCTCTACCATACAGTGGGCTTCCTCCTCCCATCTGCCGTGCTGATCTTCTGCTACTCCTGCATCCTGTTGCAGCTGCAGCGCGGCTCCCAGGGCCTCCAGAAGCAGAGGGCCGTCCGGGTCATCCTGGCCCTGGTGCTGGTCTTCTTCCTCTGCTGGACTCCCTACAACATCACCTTAATGGTGGACACCTTTCAGGGGAGGCCTGGGGAGCCTGTTTCTGGGTCCTGTGAGAAGGGGAGGACAGCTCTGGAGAACAGTCTGGTGGTTACGTTCGCTCTAGCCTGCCTGCACGCTTGCCTCAACCCAGTGCTCCATCTCGGACTGTGTAGAAACTTCCGGCGACGCGTGCTGGATATGGTGAGGTGTGTTGAGGGGGTGCAGAACGATCCGAAACTCTCACTATGGGATTCAGGTGTGGTTGAAGACTCACCTGACCAAGCAGAGGAGATGGGGACGTTGAACACAATGACAACCATGGGACAGGTACAGTCCACCCAGAGCTGATGGGTAGGAAGAGGATCCTAATGACTAATATAGTATGTCTTCCTGCCTTGAGGGGAAGTTGTATGGGTCATGGGTCTGGGGACTGGTGGGTGACCGTAACCTGGGTCATGAGAGAAAGACATGCATAGTAGAAAGCCCCTTATGAGGACTGCTTTCTTTGAATTGCACTTTAATGGATAACGCTCACACTAAATGTATATTCGTATAAAGTCAGTGGGTTGTCTGATCTTCACGTTTTGTTTTACCTATCGATGTCGTCTGGCTCTGTAGAATCTGTTGGAAAGATTCATGCATTAATTATTCAAACCTAtatctattgtattattatttttacagaGCACTTCACTGAATGTAATGGATTTTAGAGTAAACAATGTTCTCAGCAGACACATACATCCTACATATTTATTTGGAATGTGAAGCTAAACCATtttatttggctctatactccagcatttgggatttgaaatcaaatgttttgtATTAGGCGATGGTACAtcatgtcaccttttatttgagggtgtTTTCATACGTTtctgttttactgtttagaaatgaatgcactttatgtatctagtccccctattaggtgtcataagtatttggacaaattcactttaGTGTGTTAAATTTAGTCAAAAGttgagtatttggtcccataatTCTAGCACACAATGGCTACATCAAGcatgtgactctacaaacttgttggatgcgtttgcagtttgtttttgttgtgtttcagattattttgtgccgaatataaattaatggtaaatattgtattgtgtcattttggagtcaccttTATTATAAATAATAATAGAATGTGTTTTCTTCTATATTAAAAtggctaccatgattacggataatcctgaatcaATCGTGATTAATGATGAGTAAGAAAATTACAGATGCACAAAGATCAtgcccccaagacatgctaacctctcgccattaccaataacaggggagcaTAGGATTTTCTTAGGAATATGATATTTATatatctgtaactttctcactcaatattattcacgattcattcataaTTATCTGTATGAAGAAATCCCAACATTTTCTCACAGAATATTACATTTTTAGTAGGACTTGTATATGTTACTGTTCTATTGTGTAACTATAATGTTATATTAAACAAGTATATCCTGTTATTGTATTATTCCATTACTGTGTATAATTAATGAATAAGAGTATTTTTAcctttttacaacaattgtttcaCTTTTGATTTCCTCAAGTCGGTGTCACAATATCCTGTAAATTGACCCACTCTGGGGAAGCCCGATGTTGTTTTTACCCTTTCTTTTGACTGGTTTTAACGTGTCTGACAGCAGGATGAGACAGGGTTTCCCACTCTGTCCCAGGAATCCCAGGCTTGAGTTAATTTCTTTGTTGCAACAGGCTGTTTAGGCCTTTGGCAGGCCTGATGACACACACAGCCATGGTTAGTGACATCATTGGTCAGatgtggtgggagagggagacagtaATATTCCTCTTTGTGACCTGCTCCCTTTTCACGGGTCTGTGTCCTCAATATCCGTCTGAATACACCACTGTTTGTTTTACTAAGAGAGGACTGTAGTAGGCATTGTCAACCAGATGAAACTGTGGGAGAAGGTAAGATAAGAGCAAACAGAAATgaaggaggtggggagagatggagaaggagataTATTGCTGGTTTCAGCAGCTGCGGTTACCTAGAGGGAAATGTTCATCCGCTTCTGTATTGTTAGGCACTGCTCTTTTTCATATGAGAGCCAAGGTCCAAACAAGAGGTGTTGGAGACTTCTAGTTTGCATGCATATTCTAGGCTACACCAGCAGCAGTTGTGCTACACTGCGCCTGACAGAATAGTGCTTCAGTTATATTAAATTCGTGGTGCATGTCCATCTCAATAGTTTAGAATAAGGACACCTCCTGCTCTaatctcatctcctttcctccttcACTGATCTGAAGACACAAGATTAACTTACAAAAAGCAACATGGTTATGCATACAtaattattatgtattatataccttatggcccaacctggtctcagagcattttgtattactCTGTATTTAAATCTGGGACGCTCAATttattatgatatgttacgtttagtatggta
>XM_036941810.1
ttgaaactatttagcgcgcaccgctaactaagctagccgtttcacatccgttacatatgtACTATGTTAAGTCTTGTCAATGAGaccaggctgcaacacaacacgTTCCGACAAAATCCACTCTTGCCAGATCTTGACTATGTTTGCACTGCGCACAGCACAGCTGTTGTGAGCGCAAGCCCCGCCAAATACATGTTATTGACCGACAATCGGAACCTGTGGTAGGCGTTAACTCTCTAAAAGTCCTGCATCATCCCCGTGACATCCTTCACTTTTGTTTTGTGTGAACTGTTAGTTCAAGTTGTTCTCTCCTTCCTGCTCAGGGAATGCAGCCATTCAAACAAACTGTCTGTTATATACTGGCTTTTTATAGTGTacgtctctctccagtctctccaatGCTACTGGGACTACTGAATGATCggctatttttatttttagttgaacctttatttaactacagaACACGGTTTATGTGacagacatggaTTTGGACCTGGGAGGGATATTTCTAGAGAATAGCACCTATAACTACGATGGGGACTATGTTTATAAAGAGGAATGCTCCCCTGAAGATGGCGTTGGAGTGCGTTTTGGCACGGTGTTCCTCCCAATGCTCTACTCCCTGACGCTGGTCCTGGGGCTAGTGGGTAACGTGTTGGTCCTGGTGGTTCTGGTCCAGAGGAGGCGGAGCTGGAGCGTGACGGACACCTTCATCCTGCACCTGGGCTTGGCCGACACCCTGCTGCTGGTCACCCTGCCCCTCTGGGCTGTTCAGGCCACTGGGGAATGGAGCTTCGGGACCCCCCTCTGCAAGATCACTGGAGCCATGTTCACAatCAACTTTTACTGTAGCATCTTCCTGCTGGCCTGCATCATTCTGGACCGCTACCTGTCCGTGGTTCACGCAGTCCAGATGTACTCTCGCAGGAAGCCCTGGATGGTGCAGGCCAGCTGCCTGTCCGTGTggctcctctccatcctcctctccatcccagaCTGGCACTTCCTGGAGTCTGTGAGACGAGACAAACAGGAGTGTGTCCAAAACTACccgtctctctcccagtctgggtTTGACTGGCGTCTGGTCTCCCGCCTGCTCTACCATACAGTGGGCTTCCTCCTCCCATCTGCCGTGCTGATCTTCTGCTACTCCTGCATCCTGTTGCAGCTGCAGCGCGGCTCCCAGGGCCTCCAGAAGCAGAGGGCCGTCCGGGTCATCCTGGCCCTGGTGCTGGTCTTCTTCCTCTGCTGGACTCCCTACAACATCACCTTAATGGTGGACACCTTTCAGGGGAGGCCTGGGGAGCCTGTTTCTGGGTCCTGTGAGAAGGGGAGGACAGCTCTGGAGAACAGTCTGGTGGTTACGTTCGCTCTAGCCTGCCTGCACGCTTGCCTCAACCCAGTGCTCCATCTCGGACTGTGTAGAAACTTCCGGCGACGCGTGCTGGATATGGTGAGGTGTGTTGAGGGGGTGCAGAACGATCCGAAACTCTCACTATGGGATTCAGGTGTGGTTGAAGACTCACCTGACCAAGCAGAGGAGATGGGGACGTTGAACACAATGACAACCATGGGACAGGTACAGTCCACCCAGAGCTGATGGGTAGGAAGAGGATCCTAATGACTAATATAGTATGTCTTCCTGCCTTGAGGGGAAGTTGTATGGGTCATGGGTCTGGGGACTGGTGGGTGACCGTAACCTGGGTCATGAGAGAAAGACATGCATAGTAGAAAGCCCCTTATGAGGACTGCTTTCTTTGAATTGCACTTTAATGGATAACGCTCACACTAAATGTATATTCGTATAAAGTCAGTGGGTTGTCTGATCTTCACGTTTTGTTTTACCTATCGATGTCGTCTGGCTCTGTAGAATCTGTTGGAAAGATTCATGCATTAATTATTCAAACCTAtatctattgtattattatttttacagaGCACTTCACTGAATGTAATGGATTTTAGAGTAAACAATGTTCTCAGCAGACACATACATCCTACATATTTATTTGGAATGTGAAGCTAAACCATtttatttggctctatactccagcatttgggatttgaaatcaaatgttttgtATTAGGCGATGGTACAtcatgtcaccttttatttgagggtgtTTTCATACGTTtctgttttactgtttagaaatgaatgcactttatgtatctagtccccctattaggtgtcataagtatttggacaaattcactttaGTGTGTTAAATTTAGTCAAAAGttgagtatttggtcccataatTCTAGCACACAATGGCTACATCAAGcatgtgactctacaaacttgttggatgcgtttgcagtttgtttttgttgtgtttcagattattttgtgccgaatataaattaatggtaaatattgtattgtgtcattttggagtcaccttTATTATAAATAATAATAGAATGTGTTTTCTTCTATATTAAAAtggctaccatgattacggataatcctgaatcaATCGTGATTAATGATGAGTAAGAAAATTACAGATGCACAAAGATCAtgcccccaagacatgctaacctctcgccattaccaataacaggggagcaTAGGATTTTCTTAGGAATATGATATTTATatatctgtaactttctcactcaatattattcacgattcattcataaTTATCTGTATGAAGAAATCCCAACATTTTCTCACAGAATATTACATTTTTAGTAGGACTTGTATATGTTACTGTTCTATTGTGTAACTATAATGTTATATTAAACAAGTATATCCTGTTATTGTATTATTCCATTACTGTGTATAATTAATGAATAAGAGTATTTTTAcctttttacaacaattgtttcaCTTTTGATTTCCTCAAGTCGGTGTCACAATATCCTGTAAATTGACCCACTCTGGGGAAGCCCGATGTTGTTTTTACCCTTTCTTTTGACTGGTTTTAACGTGTCTGACAGCAGGATGAGACAGGGTTTCCCACTCTGTCCCAGGAATCCCAGGCTTGAGTTAATTTCTTTGTTGCAACAGGCTGTTTAGGCCTTTGGCAGGCCTGATGACACACACAGCCATGGTTAGTGACATCATTGGTCAGatgtggtgggagagggagacagtaATATTCCTCTTTGTGACCTGCTCCCTTTTCACGGGTCTGTGTCCTCAATATCCGTCTGAATACACCACTGTTTGTTTTACTAAGAGAGGACTGTAGTAGGCATTGTCAACCAGATGAAACTGTGGGAGAAGGTAAGATAAGAGCAAACAGAAATgaaggaggtggggagagatggagaaggagataTATTGCTGGTTTCAGCAGCTGCGGTTACCTAGAGGGAAATGTTCATCCGCTTCTGTATTGTTAGGCACTGCTCTTTTTCATATGAGAGCCAAGGTCCAAACAAGAGGTGTTGGAGACTTCTAGTTTGCATGCATATTCTAGGCTACACCAGCAGCAGTTGTGCTACACTGCGCCTGACAGAATAGTGCTTCAGTTATATTAAATTCGTGGTGCATGTCCATCTCAATAGTTTAGAATAAGGACACCTCCTGCTCTaatctcatctcctttcctccttcACTGATCTGAAGACACAAGATTAACTTACAAAAAGCAACATGGTTATGCATACAtaattattatgtattatataccttatggcccaacctggtctcagagcattttgtattactCTGTATTTAAATCTGGGACGCTCAATttattatgatatgttacgtttagtatggta

Function

NR:

description
C-X-C chemokine receptor type 3-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0042119 neutrophil activation biological_process
GO:0006935 chemotaxis biological_process
GO:0006954 inflammatory response biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0002685 regulation of leukocyte migration biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016494 C-X-C chemokine receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941801.1 False 3890 mRNA 0.44 3 21698295 21704763
XM_036941810.1 True 3750 mRNA 0.44 3 21699881 21704763

Neighbor

gene id symbol gene type direction distance location
LOC110537622 LOC106605554 coding upstream 21375 21671490 ~ 21676920 (+)
LOC110537595 LOC106605558 coding upstream 127932 21555905 ~ 21570363 (+)
LOC118938333 LOC106605563 coding upstream 151257 21532987 ~ 21547038 (+)
LOC118944067 LOC106597946 coding upstream 165282 21531248 ~ 21533013 (+)
LOC110534436 LOC106605563 coding upstream 167402 21512340 ~ 21530893 (+)
LOC110537629 LOC106578808 coding downstream 501 21705264 ~ 21708361 (+)
LOC110537775 LOC106605724 coding downstream 31986 21736749 ~ 21742169 (+)
LOC110537646 LOC106574911 coding downstream 52530 21757293 ~ 21804410 (+)
LOC110537766 LOC106592382 coding downstream 88761 21793524 ~ 21799614 (+)
LOC110537864 LOC106605571 coding downstream 96569 21801332 ~ 21803861 (+)
G121884 NA non-coding upstream 1293 21696636 ~ 21697002 (+)
G121877 NA non-coding upstream 4319 21693761 ~ 21693976 (+)
G121866 NA non-coding upstream 13498 21684591 ~ 21684797 (+)
G121861 NA non-coding upstream 15482 21682549 ~ 21682813 (+)
G121732 NA non-coding upstream 25565 21672401 ~ 21672730 (+)
G121898 NA non-coding downstream 4550 21709313 ~ 21710578 (+)
G121897 NA non-coding downstream 6825 21711588 ~ 21712136 (+)
G121920 NA non-coding downstream 23711 21728474 ~ 21728737 (+)
G121930 NA non-coding downstream 93588 21798351 ~ 21812247 (+)
G121677 NA other upstream 112194 21585421 ~ 21586101 (+)
LOC110509768 LOC106576258 other upstream 682404 20990131 ~ 21058856 (+)
erfl3 LOC106576393 other upstream 722096 20900204 ~ 20977481 (+)
G120169 NA other upstream 1279167 20407862 ~ 20419128 (+)
LOC110537735 LOC106595974 other downstream 116451 21821165 ~ 21825285 (+)
G122030 NA other downstream 311899 22015130 ~ 22018815 (+)
LOC110537939 apoc1 other downstream 637764 22342491 ~ 22346615 (+)
apoc4 NA other downstream 643820 22348543 ~ 22349936 (+)
G122459 LOC106578191 other downstream 1106004 22810767 ~ 22811263 (+)

Expression


Co-expression Network