LOC110537643 (LOC106605567)


Basic Information

Item Value
gene id LOC110537643
gene name LOC106605567
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21713005 ~ 21721635 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941837.1
CAGGGAACTCCCCTTGAGTCCGGGAACTCCCCTTGGGTCCGGGAACTGCTACAGGTTCTCATGCCTCAACCAGATCGTCGGGCTTCCCCCCcttcagccggctcgtcaggttcCTGCACCACAGCTGAATCgacaggctcccacgcctcagctggCATGACCACAGCTCAACCCGTCTGACAGGTTCCTGAGCATCAGCAGGGATGACCAGTCTTCTCCTGATCCCCAGATGCATCTCTTCTGGTGGATCACCCACAtctttctatccctcccttctctcctctcttgtccaaTCCTTCACGTGCGACAATGAGACACAGTATGCTTGGTAAGCCAATGGTGCTGCAACAAATGTCCACCAGGACCTCTGCCATAAACAGAGTAAGTCAACCACCTATCTATCCATCAGTTGCTGACTGCAGAGGCAAGACACTTCCAAACTCATCTCTGgaaattaccacgacacTGTCCCAGGATGAAAAGTGCAGCTACATGGGAAAAACAATGTTAAAACTATGACAGCGAGTTGGGAGTGTTCGTTTCATTTGGACCGACTGGCACTTCCTGGAGTCTGTGATGGACACCAGACGAGACAAACAGGAGTGTGTCCAcaactacctgtctctctcccagtctgggtTTGACTGGCGCCTGGCCTCCCGCCTGCTCTACCATACAGTGGGCTTCCTCCTCCCATCTGCCGTGCTGCTCTTCTGCTACTCCTGCATCCTGCTGCGGCTGCAGCGTGGCTCCCAGGGCCTCCAGAAGCAGAGGGCCGTCCGGGTCATCCTGGCCCTGGTGCTGGTCTTCTTCCTCTGCTGGACGCCCTACAACATCACCCTAATGGTGGACACCCTCTACTCCAACAACACCCTGGAGGTCAACTGCGAGAGCCATAAAGCCCTGGACATCTCCCTGACGGCCACCTCCTCTCTGGGCTACCTGCACTGCAGCCTCAACCCTGTGCTCTACTCCTTCGTGGGGGTGAAGTTCCGGCACCACCTGCTGGACATGCTGAGGTCCCTGGGCTGCAAGCTGAAGAGTGGAGTCAGGCTGCAGACTGCCAGCCGGAGGAGCTCCATGTGGTCTGAGTCTGGAGACACCTCCCACACCTCTGCCATCTATTAAGGACTTATCTCTCTATCCCAAGGTCTCCCAAACTATGTCCTAAGGACCCCAAAtggtgcatgttttgttttttaccctagcactacacatCTGATACAAATAATCAGCTAATCGTCAAACTATGATAatgtgaatcagctgtgtagcgttagggcaaaaaccaaaacgtgcaccccttggtatcccgaggaccgagtttaggaaacactgctctatccTGTTGCTCTTGAGTTGTCGTTGACTCAATAAGTGGATTATCAATGTGACCTTTAGCCTACTCCAACTTCCCCTCCAGCAGATTTGGACTGGAGGAAAGGTTGTTAGATCCGCACTGTTTCACCATCATCTTTTCCCAATTTTCCCAATTTTGTAGAATTATTGCCTATTAAAGAAACTCTTTGTAAATAATGGGGCCTATAATGAAGTTACACATAAGTAAATCAGTTGTACACAACTAAAAAATAATAAAGTGATTACAAAATGATATACACTTTTTTAGAGTATGAACAATATCTTATGAGTTTTAAGCTTGTCATTTATAATTTTACTTACCTGCTTTACGTTTTGTTATAAAATGATAACTGGCATATGTGCTCTGTTATAGTTAATGCATTTGTTATTACTGACACATGCAATGATTTGATGTATATTTTTTCATTACAAAAATGCACAGTATCCTATGACAGGTTACAATTTCAAGGAACCATAGTGAAATACTGAATAAAGTTTAATTCGTTATACTATCATTCAGAATCTCTGTCTTTTAATGGTTGGTTAATAGATGTCTGTACACCAAAAACGAAAACCCCTAGAGGAAGCCAGACCCAGATCAGCAGAGATTTAGCCACACCACCAACAAGGGCCTGTTCAGGATGATTGAACATCAAAGAACAATCATAAAcatgtcaggatttggccagggttgttccggtttttggtcactagatgcccccattgtgctttttgaccttttgttttcccttgatccccattattatttgcacctgtgcctcgtttcccctgattgtatttaaacccttagttttcctcagttctttgctctgtgtttgtatgttagcacccagccctagtattctgTGAACTCTTGTTGATCCCAGTGGACTCGcttgtggaattctgtttttgttcttgtttatttatttttgagtatcttttgaggctttttatgctactcctaccaccttgtggatttacctttttt
>XM_036941829.1
CAGGGAACTCCCCTTGAGTCCGGGAACTCCCCTTGGGTCCGGGAACTGCTACAGGTTCTCATGCCTCAACCAGATCGTCGGGCTTCCCCCCcttcagccggctcgtcaggttcCTGCACCACAGCTGAATCgacaggctcccacgcctcagctggCATGACCACAGCTCAACCCGTCTGACAGGTTCCTGAGCATCAGCAGGGATGACCAGTCTTCTCCTGATCCCCAGATGCATCTCTTCTGGTGGATCACCCACAtctttctatccctcccttctctcctctcttgtccaaTCCTTCACGTGCGACAATGAGACACAGTATGCTTGGTAAGCCAATGGTGCTGCAACAAATGTCCACCAGGACCTCTGCCATAAACAGAGTAAGTCAACCACCTATCTATCCATCAGTTGCTGACTGCAGAGGCAAGACACTTCCAAACTCATCTCTGCTTGTTCTATATAGCCCACCTCACATACCACAGCTGCACCGGACGCTGCAAAGGTGTGAAAAAAACACTGCAACTACACCATGTGCACAGACCAGACAAGAAGAACAGAGACCGACACTGAAACAaaccagatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgagagagaaaggTGATGTGGTTTGATGGCTTCGGTGGGGATTACAACATGAAAGAAAGTAGCAGAAAAAGGATGTAAAGAGGGTTAGAAAgaaattaccacgacacTGTCCCAGGATGAAAAGTGCAGCTACATGGGAAAAACAATGTTAAAACTATGACAGCGAGTTGGGAGTGTTCGTTTCATTTGGACCGACTGGCACTTCCTGGAGTCTGTGATGGACACCAGACGAGACAAACAGGAGTGTGTCCAcaactacctgtctctctcccagtctgggtTTGACTGGCGCCTGGCCTCCCGCCTGCTCTACCATACAGTGGGCTTCCTCCTCCCATCTGCCGTGCTGCTCTTCTGCTACTCCTGCATCCTGCTGCGGCTGCAGCGTGGCTCCCAGGGCCTCCAGAAGCAGAGGGCCGTCCGGGTCATCCTGGCCCTGGTGCTGGTCTTCTTCCTCTGCTGGACGCCCTACAACATCACCCTAATGGTGGACACCCTCTACTCCAACAACACCCTGGAGGTCAACTGCGAGAGCCATAAAGCCCTGGACATCTCCCTGACGGCCACCTCCTCTCTGGGCTACCTGCACTGCAGCCTCAACCCTGTGCTCTACTCCTTCGTGGGGGTGAAGTTCCGGCACCACCTGCTGGACATGCTGAGGTCCCTGGGCTGCAAGCTGAAGAGTGGAGTCAGGCTGCAGACTGCCAGCCGGAGGAGCTCCATGTGGTCTGAGTCTGGAGACACCTCCCACACCTCTGCCATCTATTAAGGACTTATCTCTCTATCCCAAGGTCTCCCAAACTATGTCCTAAGGACCCCAAAtggtgcatgttttgttttttaccctagcactacacatCTGATACAAATAATCAGCTAATCGTCAAACTATGATAatgtgaatcagctgtgtagcgttagggcaaaaaccaaaacgtgcaccccttggtatcccgaggaccgagtttaggaaacactgctctatccTGTTGCTCTTGAGTTGTCGTTGACTCAATAAGTGGATTATCAATGTGACCTTTAGCCTACTCCAACTTCCCCTCCAGCAGATTTGGACTGGAGGAAAGGTTGTTAGATCCGCACTGTTTCACCATCATCTTTTCCCAATTTTCCCAATTTTGTAGAATTATTGCCTATTAAAGAAACTCTTTGTAAATAATGGGGCCTATAATGAAGTTACACATAAGTAAATCAGTTGTACACAACTAAAAAATAATAAAGTGATTACAAAATGATATACACTTTTTTAGAGTATGAACAATATCTTATGAGTTTTAAGCTTGTCATTTATAATTTTACTTACCTGCTTTACGTTTTGTTATAAAATGATAACTGGCATATGTGCTCTGTTATAGTTAATGCATTTGTTATTACTGACACATGCAATGATTTGATGTATATTTTTTCATTACAAAAATGCACAGTATCCTATGACAGGTTACAATTTCAAGGAACCATAGTGAAATACTGAATAAAGTTTAATTCGTTATACTATCATTCAGAATCTCTGTCTTTTAATGGTTGGTTAATAGATGTCTGTACACCAAAAACGAAAACCCCTAGAGGAAGCCAGACCCAGATCAGCAGAGATTTAGCCACACCACCAACAAGGGCCTGTTCAGGATGATTGAACATCAAAGAACAATCATAAAcatgtcaggatttggccagggttgttccggtttttggtcactagatgcccccattgtgctttttgaccttttgttttcccttgatccccattattatttgcacctgtgcctcgtttcccctgattgtatttaaacccttagttttcctcagttctttgctctgtgtttgtatgttagcacccagccctagtattctgTGAACTCTTGTTGATCCCAGTGGACTCGcttgtggaattctgtttttgttcttgtttatttatttttgagtatcttttgaggctttttatgctactcctaccaccttgtggatttaccttttt

Function

NR:

description
C-X-C chemokine receptor type 3-like isoform X1

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006935 chemotaxis biological_process
GO:0006954 inflammatory response biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0002685 regulation of leukocyte migration biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016494 C-X-C chemokine receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941837.1 False 2350 mRNA 0.46 4 21713005 21721635
XM_036941829.1 True 2626 mRNA 0.47 5 21713006 21721635
Loading

Neighbor

gene id symbol gene type direction distance location
cnfn LOC106605555 coding downstream 65519 21645294 ~ 21647486 (-)
LOC110534450 LOC106605556 coding downstream 79360 21631390 ~ 21633645 (-)
LOC118944069 LOC106605559 coding downstream 116470 21595236 ~ 21596535 (-)
LOC110534443 LOC106605563 coding downstream 118535 21586978 ~ 21594470 (-)
LOC118938339 LOC106605559 coding downstream 126149 21578149 ~ 21586856 (-)
LOC110537847 mrpl17 coding upstream 394014 22114700 ~ 22118083 (-)
LOC110537842 NA coding upstream 398944 22120579 ~ 22157534 (-)
LOC110537803 LOC106577461 coding upstream 451057 22172692 ~ 22175353 (-)
LOC110537752 LOC106577440 coding upstream 460210 22180756 ~ 22198840 (-)
LOC110537877 LOC106577478 coding upstream 508165 22229800 ~ 22234924 (-)
G121899 NA non-coding downstream 2911 21709604 ~ 21710094 (-)
G121892 LOC106605553 non-coding downstream 3949 21701853 ~ 21709056 (-)
G121886 NA non-coding downstream 14466 21698138 ~ 21698539 (-)
G121873 NA non-coding downstream 24337 21688444 ~ 21688668 (-)
G121871 NA non-coding downstream 25724 21686867 ~ 21687281 (-)
G122692 NA non-coding upstream 12145 21733780 ~ 21734251 (-)
G122696 NA non-coding upstream 22449 21744084 ~ 21744494 (-)
G122699 NA non-coding upstream 25906 21747541 ~ 21747811 (-)
G122700 NA non-coding upstream 26220 21747855 ~ 21818736 (-)
G122724 LOC106574911 non-coding upstream 55421 21777056 ~ 21777725 (-)
G121756 NA other downstream 165968 21490267 ~ 21547037 (-)
G121738 NA other downstream 249975 21462693 ~ 21463030 (-)
G121533 LOC106583873 other downstream 366318 21288616 ~ 21346687 (-)
G121421 LOC106576258 other downstream 654156 21056598 ~ 21058849 (-)
G121208 NA other downstream 1085305 20626557 ~ 20627700 (-)
G122733 LOC106592382 other upstream 74872 21796507 ~ 21812432 (-)
G122761 LOC106578847 other upstream 129798 21851433 ~ 21856413 (-)
G122829 LOC106605673 other upstream 304664 22026299 ~ 22027717 (-)
G122972 NA other upstream 654518 22376153 ~ 22378160 (-)

Expression

LOC110537643(LOC106605567) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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LOC110537643(LOC106605567) Expression in each Bioproject

Bar chart with 21 bars.
LOC110537643(LOC106605567) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
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Co-expression Network