LOC110537775 (LOC106605724)


Basic Information

Item Value
gene id LOC110537775
gene name LOC106605724
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21736749 ~ 21742169 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624155.2
AAGGTGCgcaccatacacacacccactccatTGCGGAAGGAAGTCAGAAGGGAGGTTACAGTTGAAACTGTAAGCGGTGGCTCTCCAAAAAGGCACATTTTACCTGTTTACAAACTGAAGTTTTGTGTTGGTGTTAACAAACCTACAAACAATAAAGGTAAACCGTCAAACAGAACGGAAGAGTCCGCGTATAAAAAGGAGCATTTTGAAGAAAGCGAAAGTAAACTTTACGCGTTTTCAGAAGGGGCCTGCATTGCCGACAGCGACACCATGGCTGAATGTGCTTGGAATGAGGAGATGTCAGAGGGTCCAGACCTCCTTCAGGAAGATCTGACCTGTCCGGTGTGTAAAGATCTTTACCGGGAGCCCGTGCTTCTTTCCTGCAGCCACAGCTTCTGCAAGGAGTGCTTGGAGCAAAGCCGAAAGATGGTGCAGAGGTGTCCCGTGTGCAGGAAGAGCTGTGACGGGGAGCAACCAATCTCTAACCGGGCGCTGATGGCCGCTACCGAGTCCTTTCAGAAGGAGAAGCGCTGGCGGGGACCGAACGCAATCAATAACGTGCCTCTTTGTAACCTGCACCGTCTGGAGCTTCAACTTTACTGCGTAAAGGACGAGGAGCCCGTGTGCGTTGACTGTGTCACTCTACATCGAACTCACGAGCTACTGCCACTCAACAAGGGCGCGCCGTTGTGTAAGGAAGAACTGACCATTAAAGTCAACATATTGGAGGAGAAAGTGGAGACCTTCAAGAGAATGAAAAAGAAATACTCTAACACAGTTGATTTCATGAagATCCAGACAGAGCAGGCAGAGAAGCAGATCAAGGCAGAGTTTGAGAGGCTCCGTCAGGTGCTGTGTGTAGAGGAGGCTGCCAGGCTGAAGGCCCTGGCAGACGAGGAGGAGGACAAGAGATCCAGTATGGAGGAAAGGATCAGCTCCTTGACCAGTGACATCGCTGCCCTCACTAAGCTGGTCCAAACAgtaaagagggagatgggggCGGAGGATTTAACCTTCTTGCAGAACTTCCAAGCTTTAAAGAAAAAAGCCCAGTGGCCTCGTGAAGACCCCCAGAATCCCTCAGATGCTCTCCTGAACATGGCCAAACACGTGGGCTCTCTGGGCTACAGCATTTGGAAGAGCATGCAGGCTCACGTCACATGCAtcccagTGGTGATGGACCCTAACACAGCCTCTCCCTGGCTTTCCATGTCCCCAGACCTGGCCAGCGTACGGGACAGCCCAGAGCGCCAGTCTCTCCCGGACAACCCTGAGCGCTTCGACCCATGTGTCTTTGTCCTTGGAGCTGAGGGCTTCTGCTCCGGCAAGCACCGCTGGGAGGTCCATGTGGGAGACAACCCGAAGTGGATCCTGGGAATCTGTAAGGAGTCTGTGGCTCGCAAGAGGAAGTTCACCGTGTCCACAGACAGGGGCGTGTGGACCATCGGGCTGAGCAAAGGGGTGTACAGCGCCCTGACGGGCCAACGTACAGTACTGGTCGTGGAGAGGCGGCCAGAGAGGATCCGGGTCAAGCTAAACATGGATAAGGGGGAGGTATCATTTTGGGATGCAGGCAACGGAGGGAAGCACCTGTGCACCTTCACACACAAGTTTACAGAGAGAGTGTTCCCCATATTTGGTCCTGGGCTCCACACCACCCCGATGGAGGTTAACCCGGCCAAGGTGACCATTCATACTGCGTGACAGGGCAGTGTGACAGTCACTACAGCTTGCTAAGTGTCTGGTTCAATAGCCGATGGGCAGTAGTAGTACTCGCTTGGATAGACATAGCATGTTATGGTCAGAAGGTAGCCTAATATGTGCACTTGAATATATGGGGCGTTCCACTGTTTCAGCTGTCAGGCTGGTGTGGTTGAATTCTAGtagttttactgtggctataggtTTGCATTGAGGAGGTTTGGATCAAGGCCTTTTGTATTGTCACAATCATCTTTGAAATTGTGCCATAGCAGTATTCCTATGCTTTCCATAGGATGTACATAATGCAGGCATTTATTATATGAGGGATTTTTTTTGGACCTTGATTCTTTAACTGGTATGTTTAGATTGCTGAGCTATTATTCATACATTTTCTAGGACTAGAGGGATTCCAGTGGTAAGAACGTATTTTCTGTCAAATCTTACTGCGTTCTGAGATTTATTGATATGTTTACTGATTTAATTATGTTTCTGTATGGAATTATGTGAAAAAtaactaataaaatactaataaaCTAATAACAATTACAA

Function

NR:

description
zinc-binding protein A33-like

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624155.2 True 2253 mRNA 0.49 6 21736749 21742169

Neighbor

gene id symbol gene type direction distance location
LOC110537629 LOC106578808 coding upstream 28388 21705264 ~ 21708361 (+)
LOC110514317 LOC106578808 coding upstream 31986 21698295 ~ 21704763 (+)
LOC110537622 LOC106605554 coding upstream 59829 21671490 ~ 21676920 (+)
LOC110537595 LOC106605558 coding upstream 166386 21555905 ~ 21570363 (+)
LOC118938333 LOC106605563 coding upstream 189711 21532987 ~ 21547038 (+)
LOC110537646 LOC106574911 coding downstream 15124 21757293 ~ 21804410 (+)
LOC110537766 LOC106592382 coding downstream 51355 21793524 ~ 21799614 (+)
LOC110537864 LOC106605571 coding downstream 59163 21801332 ~ 21803861 (+)
LOC110537743 LOC106605572 coding downstream 63442 21805611 ~ 21812352 (+)
LOC110537735 LOC106595974 coding downstream 78996 21821165 ~ 21825285 (+)
G121920 NA non-coding upstream 8012 21728474 ~ 21728737 (+)
G121897 NA non-coding upstream 24613 21711588 ~ 21712136 (+)
G121898 NA non-coding upstream 26171 21709313 ~ 21710578 (+)
G121884 NA non-coding upstream 39747 21696636 ~ 21697002 (+)
G121877 NA non-coding upstream 42773 21693761 ~ 21693976 (+)
G121930 NA non-coding downstream 56182 21798351 ~ 21812247 (+)
LOC110537720 LOC106578847 non-coding downstream 107205 21849271 ~ 21853703 (+)
G121929 NA non-coding downstream 113793 21855962 ~ 21856420 (+)
G121962 NA non-coding downstream 116141 21858310 ~ 21858797 (+)
G121677 NA other upstream 150648 21585421 ~ 21586101 (+)
LOC110509768 LOC106576258 other upstream 720858 20990131 ~ 21058856 (+)
erfl3 LOC106576393 other upstream 760550 20900204 ~ 20977481 (+)
G120169 NA other upstream 1317621 20407862 ~ 20419128 (+)
G122030 NA other downstream 274493 22015130 ~ 22018815 (+)
LOC110537939 apoc1 other downstream 600358 22342491 ~ 22346615 (+)
apoc4 NA other downstream 606414 22348543 ~ 22349936 (+)
G122459 LOC106578191 other downstream 1068598 22810767 ~ 22811263 (+)

Expression


Co-expression Network