LOC110537864 (LOC106605571)


Basic Information

Item Value
gene id LOC110537864
gene name LOC106605571
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21801332 ~ 21803861 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624296.2
aaaacgttttgccggtagtgtatatatattgatAAAATATAAGCGCTTTATAGAATATAACTTCATTGTCCATCATTTAGGGTTATATTCTCTACTCCCAATAACTATTTCAAGTTACCTCTTCTCCTCActttcccctgtgtgtgtgtgcgtgcgtgcatgtgtcaggtgtgagtgagtgagtgtgtccccAGAGAAACAGCAGCTGGTCCTTCCTCCACTGCCCAGAGGAGGATGAGTGTGCCAACGGCCACCACCACTGTAACGTCACCCAGGACTGCCATGACCTGACCCAGGGATACCACTGCACCTGCAAGCAGGGCTACGTTCTCAGCCGTGCGCCAAGTGCAAAGACTCCTTCAATGGCACACCAGTAAATGAGCACCAGTGCTACCGGCAGTTCAACGTGGACAATGAGTGTTTTGCGTCAACCCCCTGACAGCGTGGTCATCACCTTCGCCCATGAGGTCCACTCCCTGAAGTCCAGCCGCTTCTACATTGCCCTGCGTGGTGTAGGCACCGAGGAGAGACGGGGCGAGTCCCAGGGCCTGCTCTTCCTCCGCCTGGACCAGGCTCACATCGACCTGTTCATTGTCTTCTCTGTTTTCTTCTCCTGCTTCTTCCTCTCCGTCTGTGTCCTCCTTCGGAAGATCAAGCAGTTCATGGACTTCCGCCGAGAGCAGAGGCATCATATCCAGGAAATGACCAAGATGGCATCCAGGCCCTTCGCCAAGCTCACTGTCTATTTGGAGCCAGAGGAGCCCCAGCTCATCTACCTGCCCTCCACAGAGGGGCATTGTCGTTGGCAAGGCAGGCTGGGGGGCATTGTAGTTGGTTAGAGGGGGTGTGCTGGAGCCGTCTCCTACAAACACGAGTCAGGCGCAGGCCTcaccatccaccaccaccaccttacccTGGGTGGAGGGGGCAACAGTGGGCAACACCTGCCCCTGCATTACCTCAACACCCACCAGTATGTCCCCACCAACACCACGGCCTcgcacccccaccaccacccatcCTCCCACAGTGGCTACCAGCACTTCTGCTGCTCCGACCCCTTCCTGTCCCAGCTCATGGGCTTCTCCTACTCCACCTTCAAGGTGGGGCCCATCACCCTGGAGCCCACGGACGACGGCATGACCGAGGTGGCCACCGTCCTCATCCAGCTGCCGGGGGGCATCCTGGCCCCTAACCGCGCCTGCCTGGGGTCCGCCCTGGTCACACTACGGCAAAACCTCCAGGAGTACTGTGGTCACGGCATTTGAGGGGGCCACCCCGGGGCGGGAGGGGGCGCAAAGTCCTGCTAGGGCATCAGCACCTCA

Function

NR:

description
PREDICTED: multiple epidermal growth factor-like domains protein 8

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0071907 determination of digestive tract left/right asymmetry biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:1900164 nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0016020 membrane cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0043167 ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624296.2 True 1325 mRNA 0.58 2 21801332 21803861

Neighbor

gene id symbol gene type direction distance location
LOC110537766 LOC106592382 coding upstream 1718 21793524 ~ 21799614 (+)
LOC110537646 LOC106574911 coding upstream 10923 21757293 ~ 21804410 (+)
LOC110537775 LOC106605724 coding upstream 59163 21736749 ~ 21742169 (+)
LOC110537629 LOC106578808 coding upstream 92971 21705264 ~ 21708361 (+)
LOC110514317 LOC106578808 coding upstream 96569 21698295 ~ 21704763 (+)
LOC110537743 LOC106605572 coding downstream 1750 21805611 ~ 21812352 (+)
LOC110537735 LOC106595974 coding downstream 17304 21821165 ~ 21825285 (+)
LOC110537677 LOC106578847 coding downstream 30584 21834445 ~ 21847982 (+)
LOC110537720 LOC106578847 coding downstream 45410 21849271 ~ 21853703 (+)
LOC118938391 LOC106605706 coding downstream 99502 21903363 ~ 21966857 (+)
G121920 NA non-coding upstream 72595 21728474 ~ 21728737 (+)
G121897 NA non-coding upstream 89196 21711588 ~ 21712136 (+)
G121898 NA non-coding upstream 90754 21709313 ~ 21710578 (+)
G121884 NA non-coding upstream 104330 21696636 ~ 21697002 (+)
G121877 NA non-coding upstream 107356 21693761 ~ 21693976 (+)
G121929 NA non-coding downstream 52101 21855962 ~ 21856420 (+)
G121962 NA non-coding downstream 54449 21858310 ~ 21858797 (+)
G121986 NA non-coding downstream 90401 21894262 ~ 21894505 (+)
G121987 NA non-coding downstream 90798 21894659 ~ 21894882 (+)
G121677 NA other upstream 215231 21585421 ~ 21586101 (+)
LOC118938333 LOC106605563 other upstream 254298 21532987 ~ 21547038 (+)
LOC110509768 LOC106576258 other upstream 785441 20990131 ~ 21058856 (+)
erfl3 LOC106576393 other upstream 825133 20900204 ~ 20977481 (+)
G120169 NA other upstream 1382204 20407862 ~ 20419128 (+)
G122030 NA other downstream 212801 22015130 ~ 22018815 (+)
LOC110537939 apoc1 other downstream 538666 22342491 ~ 22346615 (+)
apoc4 NA other downstream 544722 22348543 ~ 22349936 (+)
G122459 LOC106578191 other downstream 1006906 22810767 ~ 22811263 (+)

Expression


Co-expression Network