LOC110537735 (LOC106595974)


Basic Information

Item Value
gene id LOC110537735
gene name LOC106595974
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21821165 ~ 21825285 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624092.2
GATCCATTACCTGATTGGTCAAGGCCAGGTTTAGTAGGCACTTTAAGGACATAAACTAGGAAGTGCAGCGTTTTTATGGCGTCGACAAAGAATTCAAATGAAGAAGCACTCCAGTCAACAAGATGAAGAGCAAACCTGGGAAAAAGCAACACAACCAAACTAAGATGTCTAAACAACATCGAGACCCCATCAAAACAGTGTGTGGAAGACAGTCAGATGATGTTGACTGCAATAGAGAAGAACCAGACATTAGTCAAGCACCCTACATTACTAAAGGAGTTTGTATCAGCTCCATCCAAATCAAAGAGGAACCAACAGACTTTGAACAGCAGGGAATGGGAGAGGAACAAAACCGTTCAGTTCCTTCCTTCCAGAAGAAGCACATCAAACATCAAAATACATCCAATCCAATGACCGGGTGTAGCCAGATATCAAGGAGTCCTATGGTGATGCTAACAAGATTGTCTAATGTGGTGGTTAAGACTCTTCTGCGAGACACTAAAGTgtgtttggtgaaggaggaaaaCCCAGACGAGACAGATGGAGtATCTACTTCTCAGTTCTTTCCTTGTCCACACTGCACCATTTCCTTCACTGACTGTTACTTCCTGGAGAATCACATCAAGACCAAACACCCGAAGCAGTACCTGGCCATGCTGAAAGGCCACGTCTCAAAGAGTAAAACCGTGTATGCCCCCACACACAGCTGTCCCCACTGTAGCTGCATGTTCCATACCCCACGGCAGCTACACGTCCACACCCGTCaggcccacccctctccctctctgagaAAACTCCACCCCTGCCCCTATTGTGCCCGCAGCTTCCAGTACATAGCCAGACTGCATACTCACTGCAAGGTTTGGCACAAAATGTCTGTCGCTTTCACCGATGGGTACCTCAGTTGCGCTGACTGTGGAAAGAGCTTCAAGAATTGCTGGGGACTGGGGCCTCACCAGTGTCACAAGCCTGAGGACACTAAGCTTGAGAATGGCCCTGTCTGTCTGAACATTGGCATGCCATGCTCAGAGTGTGGCAAAAGCTACTCTAGTCCTCGGAATCTGCGCAttcacatgcgcacacacaccggCGAGAAGCCCTACGTCTGTAAGGAGTGTGGCAAGAGCTTCTCAGAAGCCAGCAGTCATTGCAAACACATGATGATACACTCGGGGGTCAAGCCATTCAAATGCCAGGATTGTGGAAAGGATTTTGCCAGGATGGGGCGCCTCCGAGTTCACATGACTATTCACTCTGGCGAGAAGTCTTTCTCCTGCTCCAAATGTGACAAGCGGTTTGCATACAAGGACTGTCTGAATCTTCACCTGCGCACACACTCAGGGGAGAGACCTTTCAAGTGTACTGTGTGTGGTAAAGACTTTGCTTACAGAAATTATCTGAAGTTGCATCTGAAGATCCACAACAATGAAAGGAACTACCATTGTGGGGTTTGTGGGCTGAAGTTCATAAACAGTGCAGCATTGAAAACCCACCAGCGCACACACACTGGGGAGAGGCCTTTCCATTGCACAGTGTGTGACAAGACATTTTTCCGACATGAACACCTGAAGAACCACCAGCGCACTCACACAGGTGAGAAACCATACACCTGTACCGAGTGCGGTAAAAGCTTCACTCAGTCTGGAGATCTGACCAAACACAAGCGCATCCACACTGGGGAGAGGCCATTTGAATGTTCTGAATGCCACCGACGGTTTATCTGTTCTGCTGATCTGACCAGACACATGAGGATCCACAATAACTCACGGCCATATCCCTGCCAAGAGTGTGACAAGAGATTCCGCTTGGCCAACCACCTTAAAATTCACATGAGGACCCACACTGGGGAGAGACCATACTCCTGCCCCCGTTGCCATCGCACCTTCACTCGCACCCACCACCTCTCTGGTCACCTGCCTAGATGTCACTGAATGATGAAATTAGAATGTATATAAATAGTATTTTACTCTTGTTGTAGTGATTCAATAAGGGAACAGTGATGTACAGAAGATGGTTTTGTGCCTGACTCTGTTGTGGTAATGCCAATAAAGGCCTCTATAGTCTGTGAGAGATGGCACGCCTGTTATGTA
>TU140829
CATAAACTAGGAAGTGCAGCGTTTTTATGGCGTCGACAAAGAATTCAAATGAAGAAGCACTCCAGTCAACAAGATGAAGAGCAAACCTGGGAAAAAGCAACACAACCAAACTAAGATGTCTAAACAACATCGAGACCCCATCAAAACAGTGTGTGGAAGACAGTCAGATGATGTTGACTGCAATAGAGAAGAACCAGACATTAGTCAAGCACCCTACATTACTAAAGGAGTTTGTATCAGCTCCATCCAAATCAAAGAGGAACCAACAGACTTTGAACAGCAGGGAATGGGAGAGGAACAAAACCGTTCAGTTCCTTCCTTCCAGAAGAAGCACATCAAACATCAAAATACATCCAATCCAATGACCGGGTGTAGCCAGATATCAAGGAGTCCTATGGTGATGCTAACAAGATTGTCTAATGTAAGAAGAGTTCCCAACATGTGACAGTTAGTAACTAGATAAGTGTTTCGACTTTTGGTTCATGCATACTGTGGTTTCTTCATCTTTCTAATCCATAAGGTGGTGGTTAAGACTCTTCTGCGAGACACTAAAGTgtgtttggtgaaggaggaaaaCCCAGACGAGACAGATGGAGtATCTACTTCTCAGTTCTTTCCTTGTCCACACTGCACCATTTCCTTCACTGACTGTTACTTCCTGGAGAATCACATCAAGACCAAACACCCGAAGCAGTACCTGGCCATGCTGAAAGGCCACGTCTCAAAGAGTAAAACCGTGTATGCCCCCACACACAGCTGTCCCCACTGTAGCTGCATGTTCCATACCCCACGGCAGCTACACGTCCACACCCGTCaggcccacccctctccctctctgagaAAACTCCACCCCTGCCCCTATTGTGCCCGCAGCTTCCAGTACATAGCCAGACTGCATACTCACTGCAAGGTTTGGCACAAAATGTCTGTCGCTTTCACCGATGGGTACCTCAGTTGCGCTGACTGTGGAAAGAGCTTCAAGAATTGCTGGGGACTGGGGCCTCACCAGTGTCACAAGCCTGAGGACACTAAGCTTGAGAATGGCCCTGTCTGTCTGAACATTGGCATGCCATGCTCAGAGTGTGGCAAAAGCTACTCTAGTCCTCGGAATCTGCGCAttcacatgcgcacacacaccggCGAGAAGCCCTACGTCTGTAAGGAGTGTGGCAAGAGCTTCTCAGAAGCCAGCAGTCATTGCAAACACATGATGATACACTCGGGGGTCAAGCCATTCAAATGCCAGGATTGTGGAAAGGATTTTGCCAGGATGGGGCGCCTCCGAGTTCACATGACTATTCACTCTGGCGAGAAGTCTTTCTCCTGCTCCAAATGTGACAAGCGGTTTGCATACAAGGACTGTCTGAATCTTCACCTGCGCACACACTCAGGGGAGAGACCTTTCAAGTGTACTGTGTGTGGTAAAGACTTTGCTTACAGAAATTATCTGAAGTTGCATCTGAAGATCCACAACAATGAAAGGAACTACCATTGTGGGGTTTGTGGGCTGAAGTTCATAAACAGTGCAGCATTGAAAACCCACCAGCGCACACACACTGGGGAGAGGCCTTTCCATTGCACAGTGTGTGACAAGACATTTTTCCGACATGAACACCTGAAGAACCACCAGCGCACTCACACAGGTGAGAAACCATACACCTGTACCGAGTGCGGTAAAAGCTTCACTCAGTCTGGAGATCTGACCAAACACAAGCGCATCCACACTGGGGAGAGGCCATTTGAATGTTCTGAATGCCACCGACGGTTTATCTGTTCTGCTGATCTGACCAGACACATGAGGATCCACAATAACTCACGGCCATATCCCTGCCAAGAGTGTGACAAGAGATTCCGCTTGGCCAACCACCTTAAAATTCACATGAGGACCCACACTGGGGAGAGACCATACTCCTGCCCCCGTTGCCATCGCACCTTCACTCGCACCCACC

Function

NR:

description
gastrula zinc finger protein XlCGF57.1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624092.2 False 2090 mRNA 0.48 4 21821165 21825285
TU140829 True 1949 TUCP 0.50 3 21821214 21825094

Neighbor

gene id symbol gene type direction distance location
LOC110537743 LOC106605572 coding upstream 8813 21805611 ~ 21812352 (+)
LOC110537864 LOC106605571 coding upstream 17304 21801332 ~ 21803861 (+)
LOC110537766 LOC106592382 coding upstream 21551 21793524 ~ 21799614 (+)
LOC110537646 LOC106574911 coding upstream 30756 21757293 ~ 21804410 (+)
LOC110537775 LOC106605724 coding upstream 78996 21736749 ~ 21742169 (+)
LOC110537677 LOC106578847 coding downstream 9160 21834445 ~ 21847982 (+)
LOC110537720 LOC106578847 coding downstream 23986 21849271 ~ 21853703 (+)
LOC118938391 LOC106605706 coding downstream 78078 21903363 ~ 21966857 (+)
arhgef1b arhgef1 coding downstream 142393 21967678 ~ 22024337 (+)
LOC110537828 LOC106605673 coding downstream 199133 22024418 ~ 22029416 (+)
G121930 NA non-coding upstream 8918 21798351 ~ 21812247 (+)
G121920 NA non-coding upstream 92428 21728474 ~ 21728737 (+)
G121897 NA non-coding upstream 109029 21711588 ~ 21712136 (+)
G121898 NA non-coding upstream 110587 21709313 ~ 21710578 (+)
G121929 NA non-coding downstream 30677 21855962 ~ 21856420 (+)
G121962 NA non-coding downstream 33025 21858310 ~ 21858797 (+)
G121986 NA non-coding downstream 68977 21894262 ~ 21894505 (+)
G121987 NA non-coding downstream 69374 21894659 ~ 21894882 (+)
G121677 NA other upstream 235064 21585421 ~ 21586101 (+)
LOC118938333 LOC106605563 other upstream 274131 21532987 ~ 21547038 (+)
LOC110509768 LOC106576258 other upstream 805274 20990131 ~ 21058856 (+)
erfl3 LOC106576393 other upstream 844966 20900204 ~ 20977481 (+)
G120169 NA other upstream 1402037 20407862 ~ 20419128 (+)
G122030 NA other downstream 191377 22015130 ~ 22018815 (+)
LOC110537939 apoc1 other downstream 517242 22342491 ~ 22346615 (+)
apoc4 NA other downstream 523298 22348543 ~ 22349936 (+)
G122459 LOC106578191 other downstream 985482 22810767 ~ 22811263 (+)
G123980 NA other downstream 1999408 23824693 ~ 23825502 (+)

Expression


Co-expression Network