LOC110537828 (LOC106605673)


Basic Information

Item Value
gene id LOC110537828
gene name LOC106605673
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22024418 ~ 22029416 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624248.2
AAGAGGAAGGAAGGTTTATTCACAAGACAACTGGGTAGAAGTGTATAGCTGTGTTGAAAGGCACAACACTCAAAATAACATAAAGGCTTTTTAAAATCTGCAACGACTGGCAACCAATATAAAACACAGTGAAGAGGATGGTGGCCGTGACATTCTTGTTCCTCTGCTTCTGGGCTGCAGGTGACCTCAGCCGTATCCAGGTTACTCTGGAGCCAGACAGGCCCTCTCAGAGGGTGCAGCTCTCTCACACCGCCTCCCTGCGCTGCTGCTACTCAGTCACAGGGGGAGCCGTGGACACCACCTGGGCCACCAGCCCCCACATGGTCAAAGGCATCCTTCGGGGAGTGGACTGGAGAGACAACCGTGTGACGGTGGATGGGGGGAACCTGACGGCAGCAGGGGTCATGTGTCACACACTCATCCTGAGGGAGGTCCGTCTGAACGACACAGGGTTGTACCAGTGTTTCCTCAACCACAGCGCCCTGCGGCCCTCTGTATACACCCACGGCACCTTCCTGCATGTCTacaTGCCGATTGTGAAGATTCTGGACATCAGTGAAAGCACCAAGAACAGCATCCTGACTGCCGAGGGAATGTTACTGATGGTGGCAGTGCTtctgcatggtaccatgatgcTCTGTAAGACGAAGAAACTCAATCAACTGAAGAAGAAAAGGgtcaaagaggaagaggagaatatCTATGAGGGTCTAAATCTGGAGGAATGCTGCTCCACATATGATCAGATCCAGCGCTCTCTGGTGCAGGGCCCCTACCAAGACGTGGGAAACATGAttatggaggaggaggaaatccAACTGGAGAAGCCTTGAatgagagggggaaggaaggagggggatgaagagagagggtgggagaagaGCCATTTGATAGAACAGAATTGTGGTGAGGGTTTTGATAGGAATTTTCTTAACTGCCCCCCCCCTCCTTATGTTTGAATTTATAGAGTTGACCTGCGTTTTCCTTGCAGCCTTTGCTTATATTTGAATATAATTTCTTAGTGGACCAAAAAGACAGTAACCTACAATGTCAAAGGGCATTTTGCTTTCAATTTTGCCTTTCATTACCAATGCCGATACCTAACAACTTTATATTCATAAGAGATTATTTTTCTGCATGTTTGCATTTTCTATGCTTTGTGTATGCATTGGCCAAatgctttttttttctctccaatctCAATAATTCAAGGCCTGGATTGTGCTTTGTAAATAAAATTATAAAACTGA

Function

NR:

description
B-cell antigen receptor complex-associated protein alpha chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624248.2 True 1250 mRNA 0.47 5 22024418 22029416

Neighbor

gene id symbol gene type direction distance location
arhgef1b arhgef1 coding upstream 81 21967678 ~ 22024337 (+)
LOC118938391 LOC106605706 coding upstream 57561 21903363 ~ 21966857 (+)
LOC110537720 LOC106578847 coding upstream 170715 21849271 ~ 21853703 (+)
LOC110537677 LOC106578847 coding upstream 176436 21834445 ~ 21847982 (+)
LOC110537735 LOC106595974 coding upstream 199133 21821165 ~ 21825285 (+)
LOC110537667 LOC106577399 coding downstream 647 22030063 ~ 22069249 (+)
LOC110537757 LOC106605699 coding downstream 48574 22077990 ~ 22115281 (+)
LOC110537821 trp-ii coding downstream 100680 22130096 ~ 22132085 (+)
LOC110537790 trp-ii coding downstream 119527 22148943 ~ 22150744 (+)
LOC110537812 tryp coding downstream 125344 22154760 ~ 22182084 (+)
G122030 NA non-coding upstream 5603 22015130 ~ 22018815 (+)
G122026 NA non-coding upstream 36794 21986931 ~ 21987624 (+)
G122022 NA non-coding upstream 65677 21958327 ~ 21958741 (+)
G121991 NA non-coding upstream 124803 21899397 ~ 21899615 (+)
G122077 NA non-coding downstream 72599 22102015 ~ 22102282 (+)
G122065 NA non-coding downstream 143296 22172712 ~ 22173051 (+)
G122135 LOC106605692 non-coding downstream 285029 22314445 ~ 22316058 (+)
G122225 NA non-coding downstream 344576 22373992 ~ 22374650 (+)
G122242 LOC106577531 non-coding downstream 382445 22411861 ~ 22412408 (+)
G121677 NA other upstream 438317 21585421 ~ 21586101 (+)
LOC118938333 LOC106605563 other upstream 477384 21532987 ~ 21547038 (+)
LOC110509768 LOC106576258 other upstream 1008527 20990131 ~ 21058856 (+)
LOC110537939 apoc1 other downstream 313111 22342491 ~ 22346615 (+)
apoc4 NA other downstream 319167 22348543 ~ 22349936 (+)
G122459 LOC106578191 other downstream 781351 22810767 ~ 22811263 (+)
G123980 NA other downstream 1795277 23824693 ~ 23825502 (+)
LOC110538497 LOC106605627 other downstream 1832501 23861576 ~ 23881639 (+)

Expression


Co-expression Network