LOC110537842


Basic Information

Item Value
gene id LOC110537842
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22120579 ~ 22157534 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110537842
ATGATTTCTCTGGTCTTTGCTCTGCTCATCGGAGCGGTATCTCTGCAGTCTGGGTAACACTTCTGTGGTGGCTCCCTGATCTCCAGCACATGGTGGTGCCTGCTGCTCACTGCTACAAGTCCTGTGTGGAGGTGTGTCTGGGCAAAAACAACATTGAAGGGACTGAAGGTAAGGAGCAATTCATCACTTCTTCCCAAGTCATCCCCCACCCCAACTACAGCTCCTACAACATCAACAATGACATCATGCTGATCAAGCCCGCCACCCTCAACACCTACGTGCAGCCTGTTGCTCTGCCCAGCAGATCACCTACCGCGGGCACCATGTGTACCGTCTCTGGATGGGGCAACACCATGAGCTCCTCCACCGATAGCAACAAGCTACAGTGCCTGAACCTCGCCCTCCTGTCCTTCAACGTCTGTAACAACGCCTACCCTGGCATGATCACTAACGCCATGTTCTGTGCTGGATTCCTGGAGGGAGGCAAGGACTCTTGCCAGggtgaCTCCGGTGGCCCCGTGGTGTGCAACGGTCAGCTTCAGGGTATTGTGTCCTGGGGATAGGGCTGTGCCCAGCACTGATAACCACGGTGTCTATGCCAAGgTGTGCATCTTTAATGACTGGCTGACCAGCACAATGGCCACCTACTAA
>TU142002
tactgtttcggttttgtatatttcacgtttattattttgttccagtgttcagttaTGTTTTTGAATAAATCAATATGGGCACTAACCACACTGCGTTTTGGTCcaatccttactcctcctcagacgaagaggaggaaatccgttacacacatacacaacagtATGTGTTAACAGCATACTGTAGCAGCAATTTAAAATGTGTAGACAAAAGGCACTCTTCACTGAATATAGTTCATTTTGATTCATTGGAGCATTGGAGAAAATACAAAGTTGTAACTGTTTTTATGCATCAAGTGATCACTTCTCTCTGGCATTTACACAGGCATAGCTCCATAAAACCAATTATTAATGCTGCCACATGGATTTACGGAAAATATGAACATGTCTATGACGTTTCCAATAGAAAGATGTTTATAGTGAGAAATGATTCCTCCTAACAGTTTACAAGGTTAaatggatagttcacccaaattaagAATCAACATAATCCTAATGATTTGTAGAGAGTAGTCTGTGGAGCCAGAGAATCTGCAACCCAAGTTTTGTTTGATATGTTCCCACTTAGAATACTTGATAGCCAAAAATAAATGGGACTGGTAGGACCCTCTTTTAACATACTCTAATTGGTCAACTGAAGATCAATACTTTCTTGATATTATCAGCATACATTGTGTATTCGGACTTATCCCTTATAGTTTATTGAAGCCTTaaaaacacctacagtatatgtacattaGAAGTGCTTAAGCTGTTATAATTACAGCATTTATAAACCAACACAAATTGAGACATTCCACTTGTAATCAACTCCTTTGATGACATACAGAACATACTATTGCACTACTACATTCATGAACATGCTGCATGCATGTAAGAAGTACcttctacagtatatttattttttatagttTTATACCTTGGGAATAGACACAgtaactcaaattatgttaaaTGCTTTATTTGTCATTAGTATTTCATCTCCAGTATAAAAGGTAGACGCTGAACTGCACAGGATGTTGTAGACTTCTGGGACCATGCTGGAGGACCGAAGCTAGGATCAGACTTAGTAGGTGGCCATGgTGTGCATCTTTAATGACTGGCTGACCAGCACAATGGCCACCTACTA
>TU142006
GAGCAATTCATCACTTCTTCCCAAGTCATCCCCCACCCCAACTACAGCTCCTACAACATCAACAATGACATCATGCTGATCAAGCCCGCCACCCTCAACACCTACGTGCAGCCTGTTGCTCTGCCCAGCAGCTGTGCCCCCGCGGGCACCATGTGTACCGTCTCTGGATGGGGCAACACCATGAGCTCCTGTATTTTGGGGCTCTGTTGTAAAATATACTTGGTCAG
>TU141995
aggtggaGAACGAGTTATAGTTAGATATGAGTGTTTTTAATAATAGGTCTACATTTgctatgtctgtaaacacactcAGTCACCATGAAGATGACCAACTGGCACATGTAACCTTTGACCCAGGTTCTGCACTCACTGGAGCTCATGGTGTTGCCCCATCCAGAGACGGTACACATGGTGCCAGCGGGAGCACAGCTGCTGGGCAGAGCAACAGGCTGCACGTAGGTGTTGAGGGTGGCGGGCTTGCTCAGCTTGATCAGCATGATGTCATTGTCGAGGTCGTAGGCGCTGTAGTTGGGGTGACGGATCACGCGGGATGAAGAGATGAACTGCTCGCTACCCTCAGTCACCTTGATGTTGTGCTCGCCCAGATGCACCTCCACAcggctgaaagagagagagttcatGTGAATGTGGAGTTCACTTGTGTCCTTAAGTTTCGCAAAAGTTAAGCTTGTCAAATTGTTGCTAGTTGTTATTGACTCTATATGTTGCTAGTAGTTCACTTGGGAGTGTACTTACGACTTGTAGCAGTGAGCAGCAGACACAACCCAATTCTCATTGACCAAGGAGCCACCACAGAAGTGGTACCCAGAGTTCAGAGACACCTGGTGGGGCTGGGAGTAGGCCTTGCACTCATACCCTCCAACGATCTTGTCGTCCTCCGTGGCGACTGTAAACAGAGAGCAGGCACATTCTTAACGATATTACCTCAGCTTTTGAGATGGAAAAGCATAGCACTAtgataaaacaacaacaacatatttcTTAATTACgtcaaaaaaacacatttgtgaTGTTAGTGTCATTACACAGTCCTGTTCTTTTTCTATGGTCATTATTATACTCACAAGCGGCTCCAATGAGCAGAACGAAGACCAGAGAAATCATGGTTGCTGTATGATCCTGTCGATGAAAGGGGTTAATCTGCACCCCTGGTATATATGCAGAATCGGGTGTGCCGCCCCGTTTAATGGAACTGTTTGATTGGTCAAGAGAAATCCAATCAGAGGCAAAAGGTGCATTGCCAAGGTCAGCATTACGACACAGCAGTTTCCATCAAGGATTGGTATAAAGTTGACCCTAAAGGCAGCATGAAGCTAAATATACGTTTTCCTTTTTTTGTGCAGGTTCTTACCAtctggatttgatttgaatttctTACAGGAGACATTGATAAATGTACAGTGCACTACAACTGCCAGTTTGAGATGGCCAGTATTCTCTGCAGTTCAGACTGTATCTTGATCTCAACATGACTGCAACACAGCTGTGTGGTTCACACGGTGGTATTCTCTTGGAGAAGTCGACAAACACATCTTTGCTGCTCACAAGGCCAATTTGAGCTTTGTAAACAAGCAAACTGGGTTTATGGGGTTTTGTTGGAAAGTCATGCAAGGCTGTCTTAAAAATAAACTCTGTATACCTTATATGGCCATGAGTTCATTACATAAGTTATAC
>TU141996
tactgtttcggttttgtatatttcacgtttattattttgttccagtgttcagttaTGTTTTTGAATAAATCAATATGGGCACTAACCACACTGCGTTTTGGTCcaatccttactcctcctcagacgaagaggaggaaatccgttacacacatacacaacagtATGTGTTAACAGCATACTGTAGCAGCAATTTAAAATGTGTAGACAAAAGGCACTCTTCACTGAATATAGTTCATTTTGATTCATTGGAGCATTGGAGAAAATACAAAGTTGTAACTGTTTTTATGCATCAAGTGATCACTTCTCTCTGGCATTTACACAGGCATAGCTCCATAAAACCAATTATTAATGCTGCCACATGGATTTACGGAAAATATGAACATGTCTATGACGTTTCCAATAGAAAGATGTTTATAGTGAGAAATGATTCCTCCTAACAGTTTACAAGGTTAaatggatagttcacccaaattaagAATCAACATAATCCTAATGATTTGTAGAGAGTAGTCTGTGGAGCCAGAGAATCTGCAACCCAAGTTTTGTTTGATATGTTCCCACTTAGAATACTTGATAGCCAAAAATAAATGGGACTGGTAGGACCCTCTTTTAACATACTCTAATTGGTCAACTGAAGATCAATACTTTCTTGATATTATCAGCATACATTGTGTATTCGGACTTATCCCTTATAGTTTATTGAAGCCTTaaaaacacctacagtatatgtacattaGAAGTGCTTAAGCTGTTATAATTACAGCATTTATAAACCAACACAAATTGAGACATTCCACTTGTAATCAACTCCTTTGATGACATACAGAACATACTATTGCACTACTACATTCATGAACATGCTGCATGCATGTAAGAAGTACcttctacagtatatttattttttatagttTTATACCTTGGGAATAGACACAgtaactcaaattatgttaaaTGCTTTATTTGTCATTAGTATTTCATCTCCAGTATAAAAGGTAGACGCTGAACTGCACAGGATGTTGTAGACTTCTGGGACCATGCTGGAGGACCGAAGCTAGGATCAGACTTAGTAGGTGGCCATGGTGCTGGTCAGCCAGTCATTGAAGATGCACCTTGGCGTAGACACCAGGGTTACCGGGCTCGGCACAGCCGTAACCCCAGGACACAACACCCTGGAGCTCACCGTTGCACACCACAGGGCCACCAGAgtcaccctgagagagagagagagagcgagagagggaagaaggaaggcagaaagagagcgagagaaagaaagagttatATACAACTCATATTTCTGTATTAATTGAACTGAAAAGGTACATTTAAAGTCATCAGTGGAACCACTGAATTGAGGTCAGGGTGGTAAGTACCTGGCAAGAGTCCTTGCCTCCCTCCAGGTATCCAGCGCAGAACATGGCGTTGGTGATCATGCCAGGGTAGGAGTTGTTACAGTCGCTGTAGGACAGGATGGGGATGTTCAGGCACTGAAGCTTGTTCTTGTCAGCGGCTGTAAGGAaaagcagacagagagaaatggaagaatggagagagggagaaggagagttaTGGTTATATATAATGTCATTGTGTTTCTAATAGTATATGTTCAATGCCTGTAAACACACTCAGTCACCATAAAGATGACCAACTGGCACATGTAACCTTTGACCCAGGTTCTGCACTCACTGGAGCTCATGGTGTTGCCCCATCCAGAGACGGTACACATGGTGCCTGCGGGGGCACAGCTGCTGGGCAGAGCAACAGGCTGCACGTAGGTGTTGAGGGTGGCGGGCTTGCTCAGCTTGATCAGCATGATGTCATTGTCGAGGTCGTAGGCGCTGTAGTTGGGGTGACGGATCACGCGGGATGAAGAGATGAACTGCTCGCTACCCTCAGTCACCTTGATGTTGTGCTCGCCCAGATGCACCTCCACAcggctgaaagagagagagttcatGTGAATGTGGAGTTCACTTGTGTCCTTAAGTTTCGCAAAAGTTAAGCTTGTCAAATTGTTGCTAGTTGTTATTGACTCTATATGTTGCTAGTAGTTCACTTGGGAGTGTACTTACGACTTGTAGCAGTGAGCAGCAGACACAACCCAATTCTCATTGACCAAGGAGCCACCACAGAAGTGGTACCCAGAGTTCAGAGACACCTGGTGGGGCTGGGAGTAGGCCTTGCACTCATACCCTCCAACGATCTTGTCGTCCTCCGTGGCGACTGTAAACAGAGAGCAGGCACATTCTTAACGATATTACCTCAGCTTTTGAGATGGAAAAGCATAGCACTAtgataaaacaacaacaacatatttcTTAATTACgtcaaaaaaacacatttgtgaTGTTAGTGTCATTACACAGTCCTGTTCTTTTTCTATGGTCATTATTATACTCACAAGCGGCTCCAATGAGCAGAACGAAGACCAGAGAAATCATGGTTGCTGTATGATCCTGTCGATGAAAGGGGTTAATCTGCACCCCTGGTATATATGCAGAATCGGGTGTGCCGCCCCGTTTAATGGAACTGTTTGATTGGTCAAGAGAAATCCAATCAGAGGCAAAAGGTGCATTGCCAAGGTCAGCATTACGACACAGCAGTTTCCATCAAGGATTGGTATAAAGTTGACCCTAAAGGCAGCATGAAGCTAAATATACGTTTTCCTTTTTTTGTGCAGGTTCTTACCAtctggatttgatttgaatttctTACAGGAGACATTGATAAATGTACAGTGCACTACAACTGCCAGTTTGAGATGGCCAGTATTCTCTGCAGTTCAGACTGTATCTTGATCTCAACATGACTGCAACACAGCTGTGTGGTTCACACGGTGGTATTCTCTTGGAGAAGTCGACAAACACATCTTTGCTGCTCACAAGGCCAATTTGAGCTTTGTAAACAAGCAAACTGGGTTTATGGGGTTTTGTTGGAAAGTCATGCAAGGCTGTCTTAAAAATAAACTCTGTATACCTTATATGGCCATGAGTTCATTACATAAGTTATAC
>TU141994
aggtggaGAACGAGTTATAGTTAGATATGAGTGTTTTTAATAATAGGTCTACATTTgctatgtctgtaaacacactcAGTCACCATGAAGATGACCAACTGGCACATGTAACCTTTGACCCAGGTTCTGCACTCACTGGAGCTCATGGTGTTGCCCCATCCAGAGACGGTACACATGGTGCCAGCGGGAGCACAGCTGCTGGGCAGAGCAACAGGCTGCACGTAGGTGTTGAGGGTGGCGGGCTTGCTCAGCTTGATCAGCATGATGTCATTGTCGAGGTCGTAGGCGCTGTAGTTGGGGTGACGGATCACGCGGGATGAAGAGATGAACTGCTCGCTACCCTCAGTCACCTTGATGTTGTGCTCGCCCAGACGCACCTCCACACggctgaaagagagagaattcATGTGAATGT

Function

NR:

description
trypsin-1 isoform X1

GO:

id name namespace
GO:0007586 digestion biological_process
GO:0006508 proteolysis biological_process
GO:0005615 extracellular space cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110537842 False 651 mRNA 0.52 7 22120579 22127548
TU142002 False 1126 TUCP 0.36 3 22120580 22157534
TU142006 False 227 lncRNA 0.43 2 22121774 22122035
TU141995 False 1461 TUCP 0.45 2 22129614 22155729
TU141996 False 3014 TUCP 0.42 3 22129614 22157534
TU141994 True 415 TUCP 0.52 2 22149517 22155729

Neighbor

gene id symbol gene type direction distance location
LOC110537847 mrpl17 coding downstream 2496 22114700 ~ 22118083 (-)
LOC110537643 LOC106605567 coding downstream 398944 21713005 ~ 21721635 (-)
cnfn LOC106605555 coding downstream 473093 21645294 ~ 21647486 (-)
LOC110534450 LOC106605556 coding downstream 486934 21631390 ~ 21633645 (-)
LOC118944069 LOC106605559 coding downstream 524044 21595236 ~ 21596535 (-)
LOC110537803 LOC106577461 coding upstream 45144 22172692 ~ 22175353 (-)
LOC110537752 LOC106577440 coding upstream 54297 22180756 ~ 22198840 (-)
LOC110537877 LOC106577478 coding upstream 102252 22229800 ~ 22234924 (-)
LOC110537882 LOC106577487 coding upstream 109280 22236828 ~ 22253486 (-)
LOC110537898 LOC106605692 coding upstream 186903 22314451 ~ 22316068 (-)
G122909 NA non-coding downstream 16179 22103168 ~ 22104400 (-)
G122860 LOC106584637 non-coding downstream 64442 22051423 ~ 22056137 (-)
G122849 NA non-coding downstream 105292 22014720 ~ 22015287 (-)
G122830 arhgef1 non-coding downstream 106077 22011964 ~ 22014502 (-)
G122914 NA non-coding upstream 22379 22149927 ~ 22155935 (-)
G122915 NA non-coding upstream 22724 22150272 ~ 22156271 (-)
G122891 NA non-coding upstream 52443 22179991 ~ 22180399 (-)
G122973 NA non-coding upstream 215063 22342611 ~ 22346628 (-)
G122829 LOC106605673 other downstream 92862 22026299 ~ 22027717 (-)
G122761 LOC106578847 other downstream 264678 21851433 ~ 21856413 (-)
G122733 LOC106592382 other downstream 308147 21796507 ~ 21812432 (-)
G121756 NA other downstream 573542 21490267 ~ 21547037 (-)
G121738 NA other downstream 657549 21462693 ~ 21463030 (-)
G122972 NA other upstream 248605 22376153 ~ 22378160 (-)
G123308 NA other upstream 877438 23004986 ~ 23005812 (-)
G123435 NA other upstream 1058092 23185640 ~ 23199252 (-)
LOC110538355 LOC106577931 other upstream 1152631 23279116 ~ 23281851 (-)
G124840 NA other upstream 1776291 23903839 ~ 23904677 (-)
G122833 NA non-coding downstream 91008 21965725 ~ 22029572 (-)
G122967 apoa2 non-coding upstream 197051 22354585 ~ 22356072 (-)
G123044 NA non-coding upstream 226612 22384146 ~ 22384796 (-)

Expression


Co-expression Network