LOC110537790 (trp-ii)


Basic Information

Item Value
gene id LOC110537790
gene name trp-ii
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22148943 ~ 22150744 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942247.1
TCAAACAGTTCCATTAAACGGGGAGGCACACCCAAATCTGCATATATACCAGGGGTGCAGATTAACCCCTTTCATCGACAGGATCATACAGCAACCATGATTTCTCTGGTCTTCGTTCTGCTCATTGGAGCCGCTTTCGCCACGGAGGACGACAAGATCGTTGGAGGGTATGAGTGCAAGGCCTACTCCCAGCCCCACCAGGTGTCTCTGAACTCTGGGTACCACTTCTGTGGTGGCTCCTTGGTCAATGAGAACTGGGTTGTGTCTGCTGCTCACTGTTACAAGTCccGTGTGGAGGTGCGTCTGGGCGAGCACAACATCAAGGTGACTGAGGGTAGCGAGCAGTTCATCTCTTCATCCCGCGTGATCCGTCACCCCAACTACAGCGCCTACGACCTCGACAATGACATCATGCTGATCAAGCTGAGCAAGCCCGCCACCCTCAACACCTACGTGCAGCCTGTTGCTCTGCCCAGCAGCTGTGCCCCCGCTGGCACCATGTGTACCGTCTCTGGATGGGGCAACACCATGAGCTCTACCGCAGATGGCGACAAGCTGCAGTGCCTGAACATCCCCATCCTGTCCTACAGCGACTGTGACAACTCCTACCCTGGCATGATCACCAACGCCATGTTCTGCGCTGGATACCTGGAGGGAGGCAAGGACTCTTGCCAGggtgacTCTGGTGGCCCTGTGGTGTGCAATGGTGAGCTCCAGGGTGTTGTGTCCTGGGGTTATGGCTGTGCCGAGCCCGGTAACCCCGGTGTCTACGCCAAGGTGTGCATCTTCAATGACTGGCTGACCAGCACCATGGCCACCTACTAAGTCTGATCCTAGCTTTGGTCGTCCAGTACGTTCGCACAACTCTACAACATCCCGTTCCAGATCAACATCCACCTTTTGTACGGGAGATTAGACATTATTTATGTTTATGATAAATAAAGCATTTaacactaaa

Function

NR:

description
LOW QUALITY PROTEIN: uncharacterized protein LOC110503652

GO:

id name namespace
GO:0007586 digestion biological_process
GO:0006508 proteolysis biological_process
GO:0005615 extracellular space cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01312 PRSS1_2_3; trypsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942247.1 True 958 mRNA 0.54 6 22148943 22150744

Neighbor

gene id symbol gene type direction distance location
LOC110537821 trp-ii coding upstream 16858 22130096 ~ 22132085 (+)
LOC110537757 LOC106605699 coding upstream 33662 22077990 ~ 22115281 (+)
LOC110537667 LOC106577399 coding upstream 79694 22030063 ~ 22069249 (+)
LOC110537828 LOC106605673 coding upstream 119527 22024418 ~ 22029416 (+)
arhgef1b arhgef1 coding upstream 124606 21967678 ~ 22024337 (+)
LOC110537812 tryp coding downstream 4016 22154760 ~ 22182084 (+)
LOC110537837 NA coding downstream 20235 22170979 ~ 22171985 (+)
bcl3 LOC106605697 coding downstream 53208 22203952 ~ 22229724 (+)
LOC118938435 NA coding downstream 102908 22253652 ~ 22302236 (+)
LOC110537912 LOC106605691 coding downstream 168358 22319102 ~ 22320715 (+)
G122077 NA non-coding upstream 46661 22102015 ~ 22102282 (+)
G122030 NA non-coding upstream 130128 22015130 ~ 22018815 (+)
G122026 NA non-coding upstream 161319 21986931 ~ 21987624 (+)
G122022 NA non-coding upstream 190202 21958327 ~ 21958741 (+)
G122065 NA non-coding downstream 21968 22172712 ~ 22173051 (+)
G122135 LOC106605692 non-coding downstream 163701 22314445 ~ 22316058 (+)
G122225 NA non-coding downstream 223248 22373992 ~ 22374650 (+)
G122242 LOC106577531 non-coding downstream 261117 22411861 ~ 22412408 (+)
G122256 NA non-coding downstream 279066 22429810 ~ 22431364 (+)
LOC110537735 LOC106595974 other upstream 323849 21821165 ~ 21825285 (+)
G121677 NA other upstream 562842 21585421 ~ 21586101 (+)
LOC118938333 LOC106605563 other upstream 601909 21532987 ~ 21547038 (+)
LOC110509768 LOC106576258 other upstream 1133052 20990131 ~ 21058856 (+)
LOC110537939 apoc1 other downstream 191783 22342491 ~ 22346615 (+)
apoc4 NA other downstream 197839 22348543 ~ 22349936 (+)
G122459 LOC106578191 other downstream 660023 22810767 ~ 22811263 (+)
G123980 NA other downstream 1673949 23824693 ~ 23825502 (+)
LOC110538497 LOC106605627 other downstream 1711173 23861576 ~ 23881639 (+)

Expression


Co-expression Network