Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110537837 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 22170979 ~ 22171985 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| LOW QUALITY PROTEIN: T-cell-specific guanine nucleotide triphosphate-binding protein 1-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC110537837 | True | 1007 | mRNA | 0.45 | 1 | 22170979 | 22171985 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110537790 | trp-ii | coding | upstream | 20235 | 22148943 ~ 22150744 (+) |
| LOC110537821 | trp-ii | coding | upstream | 38894 | 22130096 ~ 22132085 (+) |
| LOC110537757 | LOC106605699 | coding | upstream | 55698 | 22077990 ~ 22115281 (+) |
| LOC110537667 | LOC106577399 | coding | upstream | 101730 | 22030063 ~ 22069249 (+) |
| LOC110537828 | LOC106605673 | coding | upstream | 141563 | 22024418 ~ 22029416 (+) |
| bcl3 | LOC106605697 | coding | downstream | 31967 | 22203952 ~ 22229724 (+) |
| LOC118938435 | NA | coding | downstream | 81667 | 22253652 ~ 22302236 (+) |
| LOC110537912 | LOC106605691 | coding | downstream | 147117 | 22319102 ~ 22320715 (+) |
| LOC110537922 | LOC106605689 | coding | downstream | 160307 | 22332292 ~ 22336707 (+) |
| LOC110537939 | apoc1 | coding | downstream | 170506 | 22342491 ~ 22346615 (+) |
| G122077 | NA | non-coding | upstream | 68697 | 22102015 ~ 22102282 (+) |
| arhgef1b | arhgef1 | non-coding | upstream | 146646 | 21967678 ~ 22024337 (+) |
| G122030 | NA | non-coding | upstream | 152164 | 22015130 ~ 22018815 (+) |
| G122026 | NA | non-coding | upstream | 183355 | 21986931 ~ 21987624 (+) |
| G122022 | NA | non-coding | upstream | 212238 | 21958327 ~ 21958741 (+) |
| G122065 | NA | non-coding | downstream | 727 | 22172712 ~ 22173051 (+) |
| G122135 | LOC106605692 | non-coding | downstream | 142460 | 22314445 ~ 22316058 (+) |
| G122225 | NA | non-coding | downstream | 202007 | 22373992 ~ 22374650 (+) |
| G122242 | LOC106577531 | non-coding | downstream | 239876 | 22411861 ~ 22412408 (+) |
| G122256 | NA | non-coding | downstream | 257825 | 22429810 ~ 22431364 (+) |
| LOC110537735 | LOC106595974 | other | upstream | 345885 | 21821165 ~ 21825285 (+) |
| G121677 | NA | other | upstream | 584878 | 21585421 ~ 21586101 (+) |
| LOC118938333 | LOC106605563 | other | upstream | 623945 | 21532987 ~ 21547038 (+) |
| LOC110509768 | LOC106576258 | other | upstream | 1155088 | 20990131 ~ 21058856 (+) |
| apoc4 | NA | other | downstream | 176598 | 22348543 ~ 22349936 (+) |
| G122459 | LOC106578191 | other | downstream | 638782 | 22810767 ~ 22811263 (+) |
| G123980 | NA | other | downstream | 1652708 | 23824693 ~ 23825502 (+) |
| LOC110538497 | LOC106605627 | other | downstream | 1689932 | 23861576 ~ 23881639 (+) |
