LOC118938435


Basic Information

Item Value
gene id LOC118938435
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22253652 ~ 22302236 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035708.1
ATGACATTTCTTGGGATATCTTCGATTagttctgactattttgaggaagtgtaacTGGCTACcgcgtctcaaaatggacaaacagtactatgcTAGCACACTCGGTTCGGCTATTCGCCAACAGAACTGAAGCACCATTCAACTCATGAAGTTAGGCCAGGTGAGGATGGGAGCTGTCACATCAGTGGGTCAACAGCAGCAGAGGAGTCAGAAGGATGACCACAGGGGAGGAGGCAAAACCAGGAGAGAAGCCAAGGATGCTAGAGGTCAACCTTACCTTTGTTTATTTTGTCAATGCCCAACTCATCTTCGATGTCTTGAAAAGGAAAGAGTCTATAATATTAATGTATCTCCTCAATACTTCTTCTGATGCCAGAGCCAAACCATCCCTGACTACAGCCATTCCTTCTGGAACAACCTCTTATCTGCATCAAAACGATGTCTAATCTCATTCTGTGCGTCACCACCATAGTGGGATAAGCTGCAAGACGCAGCTTGTTCAAAGAGACTCCCGTCCTGTGTCTTTCCACTGATTGACTACCTCTCGATGTCTTCTCAGTTCCCATCATATGGTTCAATAGACCAtcattgttaattgtttactccatgtgtaactctgtgttgttgtctgtgtcacactgctatgctttatcttggccatcttggctatctggttaaataaaggtgaaataaaaatca
>XR_005035709.1
ATGACATTTCTTGGGATATCTTCGATTagttctgactattttgaggaagtgtaacTGGCTACcgcgtctcaaaatggacaaacagtactatgcTAGCACACTCGGTTCGGCTATTCGCCAACAGAACTGAAGCACCATTCAACTCATGAAGTTAGGTAATACAAACACATATCACACTCAATGCAAGTAAAacgtaatttaaaaaaacaaacttcACAAGTATAGGGTCATAACAAGGTGAACGAGTCCAAGCATCTTCTGACAGGTGGCTGTTTTCTTCAGGCCTGCAGCAGACTTTGTGTTCTCAGGAAACCAGTGGTATTCTCAGAACCTCAGATACCCAGGCCAGGTGAGGATGGGAGCTGTCACATCAGTGGGTCAACAGCAGCAGAGGAGTCAGAAGGATGACCACAGGGGAGGAGGCAAAACCAGGAGAGAAGCCAAGGATGCTAGAGGTCAACCTTACCTTTGTTTATTTTGTCAATGCCCAACTCATCTTCGATGTCTTGAAAAGGAAAGAGTCTATAATATTAATGTATCTCCTCAATACTTCTTCTGATGCCAGAGCCAAACCATCCCTGACTACAGCCATTCCTTCTGGAACAACCTCTTATCTGCATCAAAACGATGTCTAATCTCATTCTGTGCGTCACCACCATAGTGGGATAAGCTGCAAGACGCAGCTTGTTCAAAGAGACTCCCGTCCTGTGTCTTTCCACTGATTGACTACCTCTCGATGTCTTCTCAGTTCCCATCATATGGTTCAATAGACCAtcattgttaattgtttactccatgtgtaactctgtgttgttgtctgtgtcacactgctatgctttatcttggccatcttggctatctggttaaataaaggtgaaataaaaatca
>XR_005035710.1
cttgtaagcaggaatcaggaggatagaattattcTCCCTTGCCAAatgaagggcgagggagagctttgtatgcgtctctgtgtgtggagtaatggtggtcagtgatgaataaatacatgtcCATTGGGTTGGAGGAAGAACAAAATACTGTTTAGGGGGTGTGGGGGGAATGACCATATGGAGAGGAGCATGACCATTAGGGGATGTGGGGACcaagtgaaataaaaacaaaattaTAAGAAACAAATAGATAATCTACATATTAACAACTGCAACTGTGATGAATGTCGTTGGGGTGGGGGAAGAGTAAAAGTCAGTTGAGGGGGGTGTCCATAGGGGAAGCAGAATGTAATAAGTAAATTTGCTATCTTGAAAAATACTGCCAAATACTAACcaaataaaatgtatataaacATACTGTAAGTATAAGTGATTTTTTTAAAAGGGCTCTGTAGCCATCTGAGAACTCAGCAAAGGTTTCTAGTTCAGGCTGAACACACAGATAAATATGACAGTTTATTAATGTAATGTAAAACCTGTCGCACACCAGAATAACGTGTAcctgcacttacaataaacaattccggacaaggacatggggggaacagatggttaaatacacaacatttaatgagggaattgaaaccaggtgtgtgggaagacaagacaaaacaaatggaaaatgaaaagtggatcgatgatggctaaaAGACCGGCCGAACGCCGCACGgaaaggagaggaaccgacttcggcggaagtcgtgacaattaaTGTCTGGGTTTGAAAACATTGACAAATCTGTTCTTATATCATCGACAACTTAGGATTTGTTGGTTGAATTAAGCTACAGTTTTGAAACACGAGATATGGTCAAACAAAGAAACACTACAGTAGTGCAACACAATGAAAATGTAGGCCTAATGTCCCAGTTTAAATTAATGCGGGAATTGATTTTAACTCATTGGATATTTAAATTGTAGGTAGTAATGAATCATGTTCGTACCAGAAACATACGTTGTGAGACAGCCAAGCTCACCACAAGAAGTATACATCCTCCCTTGTCCTTGTAACAGTCAAGCTGCCTGATTAGACAAAGTTGCAACAGAAACATTTAGTAATACAGTTCTGTAGATTCTGTCATTTCCTCCATCAGTTCTGTACAATCTGTAATTTTTTTCCATCAAAGGAATTCGACTGCGACCAATAGTGTTTTCTTGACTGCTTAGTCATGCAATCACTGTATCGTACAGTTAAACAAATTATAATTTATATTTATCACGTACAAGTCTGTATTGGATGATATGCaatgtttttttgcatatcccaactctccctgagacccTTGGGAGAGTGGGATCACAGCCAGGGTTCGCCATTATCAACAGCGACCCTGgacaaattagggttaagtaccttgctcaagggcacatcgaaatagtttttcaccttgtcagctcagggtttcGAACTAGcatcctttcagttactggtccgaTGCTCTAACTGCCAGGCCACCTGCCGCCCTAATGCTTTGGTCCAAACTTAATCAGTGGAACCTTATCTGAAAATCCACCTGGATGGGGACGATGATTCCTCAACTGGACTTCAGCAGCTCTGAATTCCCTCAAACTGTCTTCACAGTTATGAGGAGGAAAAGGTTGTGCCTATACATGGATTCCCTTATTCTAACGGTGTTCCCAGACCTCAAGAAACATTGTAAAGATGCTGCAGGCTCACATTATTGCCCTCACCCttacatattttattttcatcAAAACAAAAGACAGTGTAATAATTGCACTCCAACGCAACTAGAAAGATCACCTCATTCATCTAAATATCCCTAgtgattatttttatttctcattaaaatctttgtttttttttactgtttcaCTAAACTGTGGAAATCGGATGAGGTAATTAATATTAGATCTTTATTATCTGACCTCCAAATCATTAAAAAGCAAAAGAGCAAAATGAAAGACACCAGTTCAGCCTTCTTGAGGAAAGGAGTATTTGTGGACCACCAACCACCATATACAGTAGTCTATGTAAGCCGATACTTATGTAAGCCGATAATGTCACATTTTACCTTCCAGCTAAGACACATGCAATATTTGGTATGACCTGATGAGTGTTTTCTTCATACAGTATAAGACCGTAAATAGAAGTGTTCAGGAAAGAGTGGGGACAGTTCGTCAAGTCTCAGTGCTCACTGTTATGCAAGACATTAGAGATGGGAAATGTCTGAAAAGACAAAGACGGATCAGGTTAGTCTGTCCTTTTGTGATACACATCATCAAGCAAGAAACAGTGTCATCACTCATGCAGAGACAACTGTACATATTTCAGTCAGCTGCAAGAGCATCAAACAGAGTTACTGTCAGTTGTTGTCTATGGTGAGGCAAGGTTTGTTGCTATTTGTTCCTGTTGTTACACATATTTGTGCTGATATGAGGGATGAGTGAtttgtattgattgattgattgacttgtATACATTCTTTCAAAGGCACAACATCCATTTCAAACTGTTATTTGCACGTAGAAGGTAAACATGGCACTGTGACACAAAGGTTATATTCATTTACTAGGTAACGTTGTAAACAAACACGGTAAGACTTGTTTCAAAATAAAGGATGTAGAAGTATATTGGGGGACTGAAAGGGGCATGTTAGAAGATAGTGTTTATGTCACGACTTCCGTAGAAGTTAGTGCCTCTCCTTGTCCGGGCGGTGTTCGgctcaccggctttctagctgccaccgatctacGTTTCTTTTTCTATTTCTTTTGTCTTGATTgtgcacacctggttcccattccgtTATAATTattttccctatttaaccctctggttcccagtATGTTTTGTGCATGTTTGTTCCTTGTTGAGTGTTATTAGACTGCGGTGTTATGGTGTGTTTTCCCTGCGTGGAATTTTATGGTTGTTTCTTTCCGAGTGAAGTATGTTATTtgactcagttctgtgtcctgcgcctgactgcGTCCTCACCGCTGCACACTGACACATGACAGTTTATTAGAAACACATTCAAATTATTAAGATATTAGATCGCATTCATTGAGAAGGCCAGGTGAGGATGGGAGCTGTCACATCAGTGGGTCAACAGCAGCAGAGGAGTCAGAAGGATGACCACAGGGGAGGAGGCAAAACCAGGAGAGAAGCCAAGGATGCTAGAGGTCAACCTTACCTTTGTTTATTTTGTCAATGCCCAACTCATCTTCGATGTCTTGAAAAGGAAAGAGTCTATAATATTAATGTATCTCCTCAATACTTCTTCTGATGCCAGAGCCAAACCATCCCTGACTACAGCCATTCCTTCTGGAACAACCTCTTATCTGCATCAAAACGATGTCTAATCTCATTCTGTGCGTCACCACCATAGTGGGATAAGCTGCAAGACGCAGCTTGTTCAAAGAGACTCCCGTCCTGTGTCTTTCCACTGATTGACTACCTCTCGATGTCTTCTCAGTTCCCATCATATGGTTCAATAGACCAtcattgttaattgtttactccatgtgtaactctgtgttgttgtctgtgtcacactgctatgctttatcttggccatcttggctatctggttaaataaaggtgaaataaaaatca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035708.1 False 699 mRNA 0.44 4 22253652 22302236
XR_005035709.1 False 888 mRNA 0.43 4 22253652 22302236
XR_005035710.1 True 3640 mRNA 0.40 4 22288537 22302236

Neighbor

gene id symbol gene type direction distance location
bcl3 LOC106605697 coding upstream 23928 22203952 ~ 22229724 (+)
LOC110537812 tryp coding upstream 71568 22154760 ~ 22182084 (+)
LOC110537837 NA coding upstream 81667 22170979 ~ 22171985 (+)
LOC110537790 trp-ii coding upstream 102908 22148943 ~ 22150744 (+)
LOC110537821 trp-ii coding upstream 121567 22130096 ~ 22132085 (+)
LOC110537912 LOC106605691 coding downstream 16866 22319102 ~ 22320715 (+)
LOC110537922 LOC106605689 coding downstream 30056 22332292 ~ 22336707 (+)
LOC110537939 apoc1 coding downstream 40255 22342491 ~ 22346615 (+)
apoc4 NA coding downstream 46307 22348543 ~ 22349936 (+)
LOC110537948 apoa2 coding downstream 50733 22352969 ~ 22356067 (+)
G122065 NA non-coding upstream 80601 22172712 ~ 22173051 (+)
G122077 NA non-coding upstream 151370 22102015 ~ 22102282 (+)
arhgef1b arhgef1 non-coding upstream 229319 21967678 ~ 22024337 (+)
G122030 NA non-coding upstream 234837 22015130 ~ 22018815 (+)
G122026 NA non-coding upstream 266028 21986931 ~ 21987624 (+)
G122135 LOC106605692 non-coding downstream 12209 22314445 ~ 22316058 (+)
G122225 NA non-coding downstream 71756 22373992 ~ 22374650 (+)
G122242 LOC106577531 non-coding downstream 109625 22411861 ~ 22412408 (+)
G122256 NA non-coding downstream 127574 22429810 ~ 22431364 (+)
G122325 LOC106577561 non-coding downstream 271881 22574117 ~ 22578051 (+)
LOC110537735 LOC106595974 other upstream 428558 21821165 ~ 21825285 (+)
G121677 NA other upstream 667551 21585421 ~ 21586101 (+)
LOC118938333 LOC106605563 other upstream 706618 21532987 ~ 21547038 (+)
LOC110509768 LOC106576258 other upstream 1237761 20990131 ~ 21058856 (+)
G122459 LOC106578191 other downstream 508531 22810767 ~ 22811263 (+)
G123980 NA other downstream 1522457 23824693 ~ 23825502 (+)
LOC110538497 LOC106605627 other downstream 1559681 23861576 ~ 23881639 (+)

Expression


Co-expression Network