LOC110537898 (LOC106605692)


Basic Information

Item Value
gene id LOC110537898
gene name LOC106605692
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22314451 ~ 22316068 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624372.2
cCAGGAAAAAAACCGGTGAGGCCAATGCTGAGATTCAAAACAAGTGAGAAACGCAAATATGAAGGTGTCTGTGGTGCTTGCAATTGCTATACTCTCTGGTTGCCATGCTAACCTGTTCTATGCTGATGAGCCCAAGCCACAGTTGGAGCAGCTGACAGATGCCTTCTGGGACTATGTCGCCAAGGCAACAAAAACTGCCGACGACACCGTCCAGATGATCAGGAAGTCTCAGCTGGGACAGGATGTCAAtGACCGTATCACAGAGAGTGCTGACGTGGCCAGCCAATACGCAGTCTCCCTGCAGGAGCAGCTTCCTCCTGCAGCCAAGGACCTGATGACCAAGATTACCCAGGAGGCTGAGGTGCTGAGAGAGCGTCTGGAGCAGGACCTGGGCAGCGTCAAGGGGAAACTGGAGCCCTACGCAGAAGAGATCAAGACACAAGTCCAGCAGAGAGTTGAGCAGCTGAAACAGGATCTGGCCCCCTATGCAGAGTCCCTGGACTCTGAGGCCCTGAGGGCCACCCTGCTTCAGAAGAGTGAGGAGCTGAAGGGGAGTCTGGAGCAGAGTGTGAAGGAGATGCAATCCCAGCTGGGTCCCTACACAGATGAGCTGAAGCAGAAAGTGGACCTGCGCTTGCAGGACTTCCAGAAGAGTGTGGCCCCCCTGGCCGAGAACCTCCAGAGCCAGCTGACCACCAGAGCTCAGATGGTGCAGAAGAGCCTAGCCCCCTATGCTGAGGACCTGAAGGACAAGCTGGACCCCTACGCCCAGGACCTGAAGGCCCAGCTTACAGCCCTCTACCAGGCCTTCACCAACACCAACTAAATGGCTCAAACCAACACCACTCCTTGATCCTCTGAAACTTTTTGAGTGATTCTGTCATACCCTGAACTGCACTGTAAAACATGGAAATTAAACTGGGCATATGCCCAGAACatcatatttattattatttagtgCAGGGTGAGAAATATAACCAAACATTCACACGCAAATATTTATGTGTTTGTTTCTACCTTGTTAAATGTTGAATAATGTCAACTTTTTATAATTTCATTAATTTTTTAAGAAAAATAAAGCTATTGCAGTTATGAACATA
>XM_021624364.2
TCAGCTACAGCTCTGGTTTCGACTATATATACAGCATGGCACTGGCCtgatagacacacagacagactgaatacacagagatacacCAGGAAAAAAACCGTGAGAAACGCAAATATGAAGGTGTCTGTGGTGCTTGCAATTGCTATACTCTCTGGTTGCCATGCTAACCTGTTCTATGCTGATGAGCCCAAGCCACAGTTGGAGCAGCTGACAGATGCCTTCTGGGACTATGTCGCCAAGGCAACAAAAACTGCCGACGACACCGTCCAGATGATCAGGAAGTCTCAGCTGGGACAGGATGTCAAtGACCGTATCACAGAGAGTGCTGACGTGGCCAGCCAATACGCAGTCTCCCTGCAGGAGCAGCTTCCTCCTGCAGCCAAGGACCTGATGACCAAGATTACCCAGGAGGCTGAGGTGCTGAGAGAGCGTCTGGAGCAGGACCTGGGCAGCGTCAAGGGGAAACTGGAGCCCTACGCAGAAGAGATCAAGACACAAGTCCAGCAGAGAGTTGAGCAGCTGAAACAGGATCTGGCCCCCTATGCAGAGTCCCTGGACTCTGAGGCCCTGAGGGCCACCCTGCTTCAGAAGAGTGAGGAGCTGAAGGGGAGTCTGGAGCAGAGTGTGAAGGAGATGCAATCCCAGCTGGGTCCCTACACAGATGAGCTGAAGCAGAAAGTGGACCTGCGCTTGCAGGACTTCCAGAAGAGTGTGGCCCCCCTGGCCGAGAACCTCCAGAGCCAGCTGACCACCAGAGCTCAGATGGTGCAGAAGAGCCTAGCCCCCTATGCTGAGGACCTGAAGGACAAGCTGGACCCCTACGCCCAGGACCTGAAGGCCCAGCTTACAGCCCTCTACCAGGCCTTCACCAACACCAACTAAATGGCTCAAACCAACACCACTCCTTGATCCTCTGAAACTTTTTGAGTGATTCTGTCATACCCTGAACTGCACTGTAAAACATGGAAATTAAACTGGGCATATGCCCAGAACatcatatttattattatttagtgCAGGGTGAGAAATATAACCAAACATTCACACGCAAATATTTATGTGTTTGTTTCTACCTTGTTAAATGTTGAATAATGTCAACTTTTTATAATTTCATTAATTTTTTAAGAAAAATAAAGCTATTGCAGTTATGAACATA

Function

NR:

description
apolipoprotein A-IV-like

GO: NA

KEGG:

id description
K08760 APOA4; apolipoprotein A-IV

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624372.2 False 1100 mRNA 0.50 4 22314451 22315983
XM_021624364.2 True 1156 mRNA 0.49 4 22314451 22316068

Neighbor

gene id symbol gene type direction distance location
LOC110537882 LOC106577487 coding downstream 60965 22236828 ~ 22253486 (-)
LOC110537877 LOC106577478 coding downstream 79527 22229800 ~ 22234924 (-)
LOC110537752 LOC106577440 coding downstream 115611 22180756 ~ 22198840 (-)
LOC110537803 LOC106577461 coding downstream 139098 22172692 ~ 22175353 (-)
LOC110537842 NA coding downstream 186903 22120579 ~ 22157534 (-)
bcam LOC106577531 coding upstream 83589 22399657 ~ 22499146 (-)
rps19 LOC100689943 coding upstream 209116 22525184 ~ 22531056 (-)
cadm4 LOC106577561 coding upstream 234860 22550928 ~ 22749138 (-)
LOC110534479 LOC106578237 coding upstream 439284 22755352 ~ 22774315 (-)
si:ch211-79k12.2 LOC106605590 coding upstream 458440 22774508 ~ 22779710 (-)
G122891 NA non-coding downstream 134052 22179991 ~ 22180399 (-)
G122915 NA non-coding downstream 158180 22150272 ~ 22156271 (-)
G122914 NA non-coding downstream 158516 22149927 ~ 22155935 (-)
G122973 NA non-coding upstream 26543 22342611 ~ 22346628 (-)
G122967 apoa2 non-coding upstream 38517 22354585 ~ 22356072 (-)
G123044 NA non-coding upstream 68078 22384146 ~ 22384796 (-)
G123088 NA non-coding upstream 157386 22473454 ~ 22474204 (-)
G123090 NA non-coding upstream 165802 22481870 ~ 22575322 (-)
G122829 LOC106605673 other downstream 286734 22026299 ~ 22027717 (-)
G122761 LOC106578847 other downstream 458550 21851433 ~ 21856413 (-)
G122733 LOC106592382 other downstream 502019 21796507 ~ 21812432 (-)
G121756 NA other downstream 767414 21490267 ~ 21547037 (-)
G122972 NA other upstream 60085 22376153 ~ 22378160 (-)
G123308 NA other upstream 688918 23004986 ~ 23005812 (-)
G123435 NA other upstream 869572 23185640 ~ 23199252 (-)
LOC110538355 LOC106577931 other upstream 964111 23279116 ~ 23281851 (-)
G124840 NA other upstream 1587771 23903839 ~ 23904677 (-)

Expression


Co-expression Network