LOC110537912 (LOC106605691)


Basic Information

Item Value
gene id LOC110537912
gene name LOC106605691
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22319102 ~ 22320715 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624383.2
TACTGTCCTGCTCACTATATATACAGGCCAGGACACGGCTGAAACTAGTCACTGCAGACTGGACTCAGAGATACACCAACACACTCATCCACAAAGACGAATCTGATTGAGAGTCATGAAGGTCCTTGTGGTGCTCGCTCTGGCTGTATTCACTGGCTGCCACGCTAACCTGCTCTACGCTGATGAGCCCAAGCCACAGCTGGAGCAGCTGACAGATGCCTTCTGGGACTACGTTGCCAAGGCAACGCAAACGGCAGATGACACCGTCCAGATGATCAGGAAGTCTCAGCTGGGACAGGATGTCAATGACCGCATCACAGAGAGCGCTGACGTGGCCAGCCAATACGCAGTCTCCCTGCAGGAGCAGCTTCCTCCTGCAGCCAAGGACCTGATGACCAAGATTACCCAGGAGGCTGAGGTGCTGAGAGAGCGTCTGGAGCAGGACCTGGGCAGCGTCAAGGGGAAACTGGAGCCCTACGCAGAGGAGATCAAGACACAAGTCCAGCAGAGAGTTGAGCAGCTGAAACAGGATCTGGCCCCCTATGCAGAGTCCCTAGACTCTGAGGCCCTGAGGGCCACCCTGCTTCAGAAGAGTGAGGAGCTGAAGGGGAGTCTGGAGCAGAGTGTGAAGGAGATGCAGTCCCAGCTGGGTCCCTACACAGATGAGCTGAAGCAGAAAGTGGACCTGCGCCTGCAGGACTTCCAGAAGAGTGTGGCCCCCCTGACCGAGAACCTCCAGAGCCAGCTGACCACCAGAGCTCAGATGGTGCAGAAGAGCCTAGCCCCCTATGCTGAGGACCTGAAGGTCAAGCTGGACCCCTACGCCCAGGACCTGAAGGCCCAGCTCACCGCCCTCTACCAGGCCTTCACCAACACCAACTAAATCACAAACACTTTCCTCCATCTGACTGCTCTTGCCCTTTTGAAGACTGTATTCTCCCTTCAAAGTCTTAGAACATACCACCGTTGTCAATAGAATGAGGGAGAGTTTACAAAGATGAACTTGGTAATGCAGAACAGGCCCATTCTGTATTTTGTATGAACTGAATTGGCTCTGATGAGTCAATGACATCtttgtattttgtttgtttgttatctGAAGGTTGGTCAGTGACTGTGCCATATTGGTGTTGTATTCTTAATTTATAGAAATAAAAAGCTAAACTAAACATAA

Function

NR:

description
apolipoprotein A-IV-like

GO: NA

KEGG:

id description
K08760 APOA4; apolipoprotein A-IV

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624383.2 True 1174 mRNA 0.52 4 22319102 22320715

Neighbor

gene id symbol gene type direction distance location
LOC118938435 NA coding upstream 16866 22253652 ~ 22302236 (+)
bcl3 LOC106605697 coding upstream 89378 22203952 ~ 22229724 (+)
LOC110537812 tryp coding upstream 137018 22154760 ~ 22182084 (+)
LOC110537837 NA coding upstream 147117 22170979 ~ 22171985 (+)
LOC110537790 trp-ii coding upstream 168358 22148943 ~ 22150744 (+)
LOC110537922 LOC106605689 coding downstream 11577 22332292 ~ 22336707 (+)
LOC110537939 apoc1 coding downstream 21776 22342491 ~ 22346615 (+)
apoc4 NA coding downstream 27828 22348543 ~ 22349936 (+)
LOC110537948 apoa2 coding downstream 32254 22352969 ~ 22356067 (+)
apoc2 LOC100135886 coding downstream 55424 22376139 ~ 22378150 (+)
G122135 LOC106605692 non-coding upstream 3044 22314445 ~ 22316058 (+)
G122065 NA non-coding upstream 146051 22172712 ~ 22173051 (+)
G122077 NA non-coding upstream 216820 22102015 ~ 22102282 (+)
arhgef1b arhgef1 non-coding upstream 294769 21967678 ~ 22024337 (+)
G122030 NA non-coding upstream 300287 22015130 ~ 22018815 (+)
G122225 NA non-coding downstream 53277 22373992 ~ 22374650 (+)
G122242 LOC106577531 non-coding downstream 91146 22411861 ~ 22412408 (+)
G122256 NA non-coding downstream 109095 22429810 ~ 22431364 (+)
G122325 LOC106577561 non-coding downstream 253402 22574117 ~ 22578051 (+)
G122330 NA non-coding downstream 259789 22580504 ~ 22583666 (+)
LOC110537735 LOC106595974 other upstream 494008 21821165 ~ 21825285 (+)
G121677 NA other upstream 733001 21585421 ~ 21586101 (+)
LOC118938333 LOC106605563 other upstream 772068 21532987 ~ 21547038 (+)
LOC110509768 LOC106576258 other upstream 1303211 20990131 ~ 21058856 (+)
G122459 LOC106578191 other downstream 490052 22810767 ~ 22811263 (+)
G123980 NA other downstream 1503978 23824693 ~ 23825502 (+)
LOC110538497 LOC106605627 other downstream 1541202 23861576 ~ 23881639 (+)

Expression


Co-expression Network