LOC110537939 (apoc1)


Basic Information

Item Value
gene id LOC110537939
gene name apoc1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22342491 ~ 22346615 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624419.2
GGCGTGCTCTTCATTGTGCGATGCGGGGTCACCATAGGTCAGAATTGGTGACTACTGATTACGTCAGCGTCCTGGGATATATAGAGGGACTCCAGTCAGTCTGTCAGACACACTGGGGTTATTTTCTCTCTGAGACGGAAAACAGCCAACAGTCAAGATGAAACTGTCCATTGCCATTGCCGTGTTGATGCTTGTGTTCGCTGCACACACAGaggcTCAGGAGGCTGAGAAGACAATTGAGGAGCGTTTCACCACCTTCGGCAATCAGATGAAGGAACTAACTGATGACCTGACCGTCAAGACCAAGGACATGTTTGAAAAGATTGGGGACAGCGAGTTCGCCACCAAGACCAAGACCTGGTTCACTGAGCAGTTTGACAAGATGAAGGCCAAGGTTGACGAGACCTTCCCCAAGCAGTAGTAAGCCTGTACACCTTTGACCCTGCCTGTCTAAGACCCCCCACGCCCCCATCACTCTTCTTGCTCTGTCTTGCCTGGTGACGCGGTTGCTGTGACGCTGACATGTGCGTTGTGCCGACAGACACAAAGGTTATATTTCACCTCTCTCAAGAGACTGATGTCATCTCTGTGTACTTGTTATGGCTTGCTTTAATAAACATGGCTTGCTTTAATAACCTGAAAAATAAAGATACCTTTGTGATAAAACTA
>TU141079
GGTCAGAATTGGTGACTACTGATTACGTCAGCGTCCTGGGATATATAGAGGGACTCCAGTCAGTCTGTCAGACACACTGGGGTTATTTTCTCTCTGAGACGGAAAACAGCCAACAGTCAAGATGAAACTGTCCATTGCCATTGCCGTGTTGATGCTTGTGTTCGCTGCACACACAGaggcTCAGGAGGCTGAGAAGACAATTGAGGAGCGTTTCACCACCTTCGGCAATCAGATGAAGGAACTAACTGATGACCTGACCGTCAAGACCAAGGACATGTTTGAAAAGATTGGGGACAGCGAGTTCGCCACCAAGACCAAGACCTGGTTCACTGAGCAGTTTGACAAGATGAAGGCCAAGGTTGACGAGACCTTCCCCAAGCAGTAGTAAGCCTGTACACCTTTGACCCTGCCTGTCTAAGACCCCCCACGCCCCCATCACTCTTCTTGCTCTGTCTTGCCTGGTGACGCGGTTGCTGTGACGCTGACATGTGCGTTGTGCCGACAGACACAAAGGTTATATTTCACCTCTCTCAAGAGACTGATGTCATCTCTGTGTACTTGTTATGGCTTGCTTTAATAAACATGGCTTGCTTTAATAACCTGAAAAATAAAGATACCTTTGTGATAAAACTATATTTGTGGGTTGTTATATTCTGCATTTGATTTGCTACAGTAAGAAGTCAACCTGCTCATTTTTAAAGAGGCCAAAAAATC
>TU141080
GGTCAGAATTGGTGACTACTGATTACGTCAGCGTCCTGGGATATATAGAGGGACTCCAGTCAGTCTGTCAGACACACTGGGGTTATTTTCTCTCTGAGACGGAAAACAGCCAACAGTCAAGATGAAACTGTCCATTGCCATTGCCGTGTTGATGCTTGTGTTCGCTGCACACACAGaggcTCAGGAGGCTGAGAAGACAATTGAGGAGCGTTTCACCACCTTCGGCAATCAGATGAAGGAACTAACTGATGACCTGACCGTCAAGACCAAGGACATGTTTGAAAAGATTGGGGACAGCGAGTTCGCCACCAAGACCAAGACCTGGTTCACTGAGCAGTTTGACAAGATGAAGGCCAAGGTTGACGAGACCTTCCCCAAGCAGTAGTAAGCCTGTACACCTTTGACCCTGCCTGTCTAAGACCCCCCACGCCCCCATCACTCTTCTTGCTCTGTCTTGCCTGGTGACGCGGTTGCTGTGACGCTGACATGTGCGTTGTGCCGACAGACACAAAGGTTATATTTCACCTCTCTCAAGAGACTGATGTCATCTCTGTGTACTTGTTATGGCTTGCTTTAATAAACATGGCTTGCTTTAATAACCTGA

Function

symbol description
apoc1 Predicted to enable fatty acid binding activity and phospholipase inhibitor activity. Acts upstream of or within cell migration involved in gastrulation. Predicted to be located in extracellular region. Predicted to be part of high-density lipoprotein particle and very-low-density lipoprotein particle. Is expressed in DEL; blastoderm; and liver. Human ortholog(s) of this gene implicated in Alzheimer's disease and obesity. Orthologous to human APOC1 (apolipoprotein C1).

NR:

description
apolipoprotein C-I-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624419.2 False 669 mRNA 0.48 4 22342491 22346534
TU141079 False 714 TUCP 0.46 4 22342527 22346615
TU141080 True 604 TUCP 0.49 4 22342527 22346505

Neighbor

gene id symbol gene type direction distance location
LOC110537922 LOC106605689 coding upstream 5784 22332292 ~ 22336707 (+)
LOC110537912 LOC106605691 coding upstream 21776 22319102 ~ 22320715 (+)
LOC118938435 NA coding upstream 40255 22253652 ~ 22302236 (+)
bcl3 LOC106605697 coding upstream 112767 22203952 ~ 22229724 (+)
LOC110537812 tryp coding upstream 160407 22154760 ~ 22182084 (+)
apoc4 NA coding downstream 2009 22348543 ~ 22349936 (+)
LOC110537948 apoa2 coding downstream 6435 22352969 ~ 22356067 (+)
apoc2 LOC100135886 coding downstream 29605 22376139 ~ 22378150 (+)
LOC110537956 LOC106605684 coding downstream 34799 22381333 ~ 22384757 (+)
LOC118944072 NA coding downstream 44197 22390731 ~ 22392179 (+)
G122135 LOC106605692 non-coding upstream 26433 22314445 ~ 22316058 (+)
G122065 NA non-coding upstream 169440 22172712 ~ 22173051 (+)
G122077 NA non-coding upstream 240209 22102015 ~ 22102282 (+)
arhgef1b arhgef1 non-coding upstream 318158 21967678 ~ 22024337 (+)
G122030 NA non-coding upstream 323676 22015130 ~ 22018815 (+)
G122225 NA non-coding downstream 27458 22373992 ~ 22374650 (+)
G122242 LOC106577531 non-coding downstream 65327 22411861 ~ 22412408 (+)
G122256 NA non-coding downstream 83276 22429810 ~ 22431364 (+)
G122325 LOC106577561 non-coding downstream 227583 22574117 ~ 22578051 (+)
G122330 NA non-coding downstream 233970 22580504 ~ 22583666 (+)
LOC110537735 LOC106595974 other upstream 517397 21821165 ~ 21825285 (+)
G121677 NA other upstream 756390 21585421 ~ 21586101 (+)
LOC118938333 LOC106605563 other upstream 795457 21532987 ~ 21547038 (+)
LOC110509768 LOC106576258 other upstream 1326600 20990131 ~ 21058856 (+)
G122459 LOC106578191 other downstream 464233 22810767 ~ 22811263 (+)
G123980 NA other downstream 1478159 23824693 ~ 23825502 (+)
LOC110538497 LOC106605627 other downstream 1515383 23861576 ~ 23881639 (+)
G124121 LOC106605585 other downstream 1800327 24146861 ~ 24148593 (+)

Expression


Co-expression Network