apoc4


Basic Information

Item Value
gene id apoc4
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22348543 ~ 22349936 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624406.2
AAAGAGCATCGAAACACTGGACTACTTACGACTGACTCACTGATCATCTAAGCCAATCCAATCAGTCCACCACTTCCCACCCAAAAACAGACCATCGGTCAGTGGTCACCAAAACAAGAACAAAGTACACATGCAACCAAGACAAAGCGCTGTGAGAAGTCCTCTAATTCAAATGAAGTGACTTGATTCCACCAAACAGATTGACAATACTGAGAACAAACACTAAGATGCCAGGGAAACTGAAGCTAGTTGCTCTCGTGTTGCTCATTCAAGCATGTGTGTCCATAGTGGCCCAGATGCCAGCCCCAGAGGACTCTGACTCTGAGGGGGTTCTGCAGAGGGCAACAGAGACATACAgggCAGCCAAAGTTAAAGCCCAGAGAATAAGAGAGGCAGTGCAGGCCTTTGCTGGTGCGTACTACGAGGACCACATCAAACCAGTGGCTGATCCCTACATGGACTGGGCCTCAGCCTCCACCAGTTCCTTCTGGGACAGAGTCAAGGAGAAGATCGACCAGTACAGACCCATCTAATGGCACCTGAATCTAAGGCAGACAAACACCCACCCAGCTCACTGCCAGCACATGTATTCATGCAAGGTGATTCTAGGGCTGATTCTATGTTCATATGCACTAGGGATTACAACTAGAAGAGCGCGTGAACAATGCTGTATGATTTGACCGGTGAATGAGTACACACATTTACTGGTGTTTCACTAACCTCAGCACAAGGGTTGTGATAGTATTAAAACTGCCATAGAGTGTATTAGTAATCATACCGTTTTGGCTCACATATTGCATCTGAGTAAGTCAATTAACTATTGTGAATCCCCAAAATGAATTCAAACtaaataaaaattttaaaaaaacatttagttGTA
>TU141081
TGATCATCTAAGCCAATCCAATCAGTCCACCACTTCCCACCCAAAAACAGACCATCGGTCAGTGGTCACCAAAACAAGAACAAAGTACACATGCAACCAAGACAAAGCGCTGTGAGAAGTCCTCTAATTCAAATGAAGTGACTTGATTCCACCAAACAGATTGACAATACTGAGAACAAACACTAAGATGCCAGGGAAACTGAAGCTAGTTGCTCTCGTGTTGCTCATTCAAGCATGTGTGTCCATAGTGGCCCAGATGCCAGCCCCAGAGGACTCTGACTCTGAGGGGGTTCTGCAGAGGGCAACAGAGACATACAgggCAGCCAAAGTTAAAGCCCAGAGAATAAGAGAGGCAGTGCAGGCCTTTGCTGGTGCGTACTACGAGGACCACATCAAACCAGTGGCTGATCCCTACATGGACTGGGCCTCAGCCTCCACCAGTTCCTTCTGGGACAGAGTCAAGGAGAAGATCGACCAGTACAGACCCATCTAATGGCACCTGAATCTAAGGCAGACAAACACCCACCCAGCTCACTGCCAGCACATGTATTCATGCAAGGTGATTCTAGGGCTGATTCTATGTTCATATGCACTAGGGATTACAACTAGAAGAGCGCGTGAACAATGCTGTATGATTTGACCGGTGAATGAGTACACACATTTACTGGTGTTTCACTAACCTCAGCACAAGGGTTGTGATAGTATTAAAACTGCCATAGAGTGTATTAGTAATCATACCGTTTTGGCTCACATATTGCATCTGAGTAAGTCAATTAACTATTGTGAATCCCCAAAATGAATTCAAACtaaataaaaattttaaaaaaacatttagttGTA

Function

NR:

description
uncharacterized protein LOC110537931

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624406.2 False 880 mRNA 0.45 4 22348543 22349936
TU141081 True 840 TUCP 0.34 4 22348583 22349936

Neighbor

gene id symbol gene type direction distance location
LOC110537939 apoc1 coding upstream 2009 22342491 ~ 22346615 (+)
LOC110537922 LOC106605689 coding upstream 11836 22332292 ~ 22336707 (+)
LOC110537912 LOC106605691 coding upstream 27828 22319102 ~ 22320715 (+)
LOC118938435 NA coding upstream 46307 22253652 ~ 22302236 (+)
bcl3 LOC106605697 coding upstream 118819 22203952 ~ 22229724 (+)
LOC110537948 apoa2 coding downstream 3033 22352969 ~ 22356067 (+)
apoc2 LOC100135886 coding downstream 26203 22376139 ~ 22378150 (+)
LOC110537956 LOC106605684 coding downstream 31397 22381333 ~ 22384757 (+)
LOC118944072 NA coding downstream 40795 22390731 ~ 22392179 (+)
LOC110537974 LOC106605680 coding downstream 146185 22496121 ~ 22544404 (+)
G122135 LOC106605692 non-coding upstream 32485 22314445 ~ 22316058 (+)
G122065 NA non-coding upstream 175492 22172712 ~ 22173051 (+)
G122077 NA non-coding upstream 246261 22102015 ~ 22102282 (+)
arhgef1b arhgef1 non-coding upstream 324210 21967678 ~ 22024337 (+)
G122030 NA non-coding upstream 329728 22015130 ~ 22018815 (+)
G122225 NA non-coding downstream 24056 22373992 ~ 22374650 (+)
G122242 LOC106577531 non-coding downstream 61925 22411861 ~ 22412408 (+)
G122256 NA non-coding downstream 79874 22429810 ~ 22431364 (+)
G122325 LOC106577561 non-coding downstream 224181 22574117 ~ 22578051 (+)
G122330 NA non-coding downstream 230568 22580504 ~ 22583666 (+)
LOC110537735 LOC106595974 other upstream 523449 21821165 ~ 21825285 (+)
G121677 NA other upstream 762442 21585421 ~ 21586101 (+)
LOC118938333 LOC106605563 other upstream 801509 21532987 ~ 21547038 (+)
G122459 LOC106578191 other downstream 460831 22810767 ~ 22811263 (+)
G123980 NA other downstream 1474757 23824693 ~ 23825502 (+)
LOC110538497 LOC106605627 other downstream 1511981 23861576 ~ 23881639 (+)
G124121 LOC106605585 other downstream 1796925 24146861 ~ 24148593 (+)
LOC110538915 LOC106605649 other downstream 2191068 24540963 ~ 24544247 (+)

Expression


Co-expression Network