LOC110537948 (apoa2)


Basic Information

Item Value
gene id LOC110537948
gene name apoa2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22352969 ~ 22356067 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624431.2
tgcatactcaTTAGATGACGTTTGTTTACTCTCCTCACTATATCATGGTGTCTACTTGTTCAGATTGCTTTACAGACAACTCAGCCACCAAAGGAGACTGTCATTTAATTCACTGGGATCTGTACATCCACTACAACAGGAGAAATGAACGGAAAGTTGGCATTAGCCTTAGTGCTTGCACTCCAAGTCTCTGTGTGCCTGTGTCAAGTACCAGAGCCAGACAAGGAGCTGGTGGAGAAGTATGAGGCCATGAAGTCTGTGTTCTACAAGAGGCTGATGAACGCCTACAGCAAGGTGCAGGCTGCTGTGGGGCCTATGACTGAGAACCTGGGCCAGGGCCAGGGCCAGGCTGCCAAAGACTACATCGAGGAGCTGCAGGGCAACCCCAAATTCCTGAGCGCTGTCAAGATCGGATCtGGTCTGGCCCAGGAAGCAGCACCCTTGGTGGACAAGGCCCGTATGGCCGGCCTGGGTCTGTACGGACACTATGTGCGCCCCCATGTCGGCACCTACCTGGACGAGGCCATCACCTCCATCAAGGTTTACCTCGACAAAATCCTACCCGCCGAGGAATGAGCCCTAGATAGACTCCGTCGCATCGGACCGCCCCACACGCTTGTACCTTTCCACACAGGGCTTGGCTCCGCTTTAGCTGTGCTTCTGATACATGTATTAAATGCTAGAGGGGGGAAATACCTCGAGGTGATTGAGAAGAGAAATGCACAATGCAAAACACATCACCTCCCGGTTTCTATGTCAACACTTTCCTAGACATGACTGTTCAAGGGAAACAAAGGTCAAAGCATGCTAGATAGGAAGATTGACATCTCGCAAGAGCTTTAACATTCGTTCAACATTTTGCATGTATATAACTACGTGTTTGATACTctaacaggagtgtgtgtgtgtgtgtttgtgtttgtgttcaaTAAAGATCTGAAAGTTGAAA

Function

symbol description
apoa2 Acts upstream of or within chordate embryonic development; epiboly involved in gastrulation with mouth forming second; and nuclear division. Is expressed in liver and yolk syncytial layer.

NR:

description
uncharacterized protein LOC110537948

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624431.2 True 949 mRNA 0.49 4 22352969 22356067

Neighbor

gene id symbol gene type direction distance location
apoc4 NA coding upstream 3033 22348543 ~ 22349936 (+)
LOC110537939 apoc1 coding upstream 6435 22342491 ~ 22346615 (+)
LOC110537922 LOC106605689 coding upstream 16262 22332292 ~ 22336707 (+)
LOC110537912 LOC106605691 coding upstream 32254 22319102 ~ 22320715 (+)
LOC118938435 NA coding upstream 50733 22253652 ~ 22302236 (+)
apoc2 LOC100135886 coding downstream 20072 22376139 ~ 22378150 (+)
LOC110537956 LOC106605684 coding downstream 25266 22381333 ~ 22384757 (+)
LOC118944072 NA coding downstream 34664 22390731 ~ 22392179 (+)
LOC110537974 LOC106605680 coding downstream 140054 22496121 ~ 22544404 (+)
LOC110538298 LOC106605596 coding downstream 498672 22854739 ~ 22856678 (+)
G122135 LOC106605692 non-coding upstream 36911 22314445 ~ 22316058 (+)
G122065 NA non-coding upstream 179918 22172712 ~ 22173051 (+)
G122077 NA non-coding upstream 250687 22102015 ~ 22102282 (+)
arhgef1b arhgef1 non-coding upstream 328636 21967678 ~ 22024337 (+)
G122030 NA non-coding upstream 334154 22015130 ~ 22018815 (+)
G122225 NA non-coding downstream 17925 22373992 ~ 22374650 (+)
G122242 LOC106577531 non-coding downstream 55794 22411861 ~ 22412408 (+)
G122256 NA non-coding downstream 73743 22429810 ~ 22431364 (+)
G122325 LOC106577561 non-coding downstream 218050 22574117 ~ 22578051 (+)
G122330 NA non-coding downstream 224437 22580504 ~ 22583666 (+)
LOC110537735 LOC106595974 other upstream 527875 21821165 ~ 21825285 (+)
G121677 NA other upstream 766868 21585421 ~ 21586101 (+)
G122459 LOC106578191 other downstream 454700 22810767 ~ 22811263 (+)
G123980 NA other downstream 1468626 23824693 ~ 23825502 (+)
LOC110538497 LOC106605627 other downstream 1505850 23861576 ~ 23881639 (+)
G124121 LOC106605585 other downstream 1790794 24146861 ~ 24148593 (+)
LOC110538915 LOC106605649 other downstream 2184937 24540963 ~ 24544247 (+)

Expression


Co-expression Network