Gene
RNA
| Item | Value |
|---|---|
| gene id | apoc2 |
| gene name | LOC100135886 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 22376139 ~ 22378150 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| apolipoprotein CII isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| NM_001124260.1 | True | 831 | mRNA | 0.47 | 4 | 22376139 | 22378150 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110537948 | apoa2 | coding | upstream | 20072 | 22352969 ~ 22356067 (+) |
| apoc4 | NA | coding | upstream | 26203 | 22348543 ~ 22349936 (+) |
| LOC110537939 | apoc1 | coding | upstream | 29605 | 22342491 ~ 22346615 (+) |
| LOC110537922 | LOC106605689 | coding | upstream | 39432 | 22332292 ~ 22336707 (+) |
| LOC110537912 | LOC106605691 | coding | upstream | 55424 | 22319102 ~ 22320715 (+) |
| LOC110537956 | LOC106605684 | coding | downstream | 3183 | 22381333 ~ 22384757 (+) |
| LOC118944072 | NA | coding | downstream | 12581 | 22390731 ~ 22392179 (+) |
| LOC110537974 | LOC106605680 | coding | downstream | 117971 | 22496121 ~ 22544404 (+) |
| LOC110538298 | LOC106605596 | coding | downstream | 476589 | 22854739 ~ 22856678 (+) |
| LOC110538314 | trp-iii | coding | downstream | 478420 | 22856570 ~ 22858072 (+) |
| G122225 | NA | non-coding | upstream | 1489 | 22373992 ~ 22374650 (+) |
| G122135 | LOC106605692 | non-coding | upstream | 60081 | 22314445 ~ 22316058 (+) |
| G122065 | NA | non-coding | upstream | 203088 | 22172712 ~ 22173051 (+) |
| G122077 | NA | non-coding | upstream | 273857 | 22102015 ~ 22102282 (+) |
| arhgef1b | arhgef1 | non-coding | upstream | 351806 | 21967678 ~ 22024337 (+) |
| G122242 | LOC106577531 | non-coding | downstream | 33711 | 22411861 ~ 22412408 (+) |
| G122256 | NA | non-coding | downstream | 51660 | 22429810 ~ 22431364 (+) |
| G122325 | LOC106577561 | non-coding | downstream | 195967 | 22574117 ~ 22578051 (+) |
| G122330 | NA | non-coding | downstream | 202354 | 22580504 ~ 22583666 (+) |
| G122340 | NA | non-coding | downstream | 238282 | 22616432 ~ 22620371 (+) |
| G122030 | NA | other | upstream | 357324 | 22015130 ~ 22018815 (+) |
| LOC110537735 | LOC106595974 | other | upstream | 551045 | 21821165 ~ 21825285 (+) |
| G121677 | NA | other | upstream | 790038 | 21585421 ~ 21586101 (+) |
| G122459 | LOC106578191 | other | downstream | 432617 | 22810767 ~ 22811263 (+) |
| G123980 | NA | other | downstream | 1446543 | 23824693 ~ 23825502 (+) |
| LOC110538497 | LOC106605627 | other | downstream | 1483767 | 23861576 ~ 23881639 (+) |
| G124121 | LOC106605585 | other | downstream | 1768711 | 24146861 ~ 24148593 (+) |
| LOC110538915 | LOC106605649 | other | downstream | 2162854 | 24540963 ~ 24544247 (+) |
