rps19 (LOC100689943)


Basic Information

Item Value
gene id rps19
gene name LOC100689943
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22525184 ~ 22531056 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624488.2
TATCTCGCGAGAACAAACGAGATCCGCCCGTTTTAACACGGGCTGGAAACCCTGTCTTACCCTCTTCCTCTCGCTGTCCACAAGCAAGATGCCTGGTGTCACAGTGAAAGACGTCAACCAGCAGGAGTTTGTCCGTGCCCTGTCGGCTTTCCTGAAGAAGTCAGGAAAGCTGAAGGTCCCAGATTGGGTGGACATTGTCAAGCTGGCCAAACACAAGGAGCTGGCCCCCAGCGACGAGAACTGGTTCTACACCAGAGCTGcTTCCACAGTGCGCCACCTGTACCTGCGTGGGGGTGCCGGTGTGGGCTCCATGACCAAGATCTATGGTGGTCGCCAGAGGAACGGTGTGTGCCCTGCCCACTTCAGTGTCGGTTCCAAAAACGTGGCCCGCAAGGTGCTGCAGGCCCTCGAGCTTCTCAAGATGGTGGAGAAGAACCCCAACGGTGGTCGCAGACTAACCGCCCAGGGAACCAGAGATCTGGACAGGATTGCTGGCCAGGTTGCAGCTGCGAAGTTGCCCCCCAAGGCTGCCCCCACAGTTTAATAAATATTTTTTGGAGAAGGTGTAATCTTGTCTGTACTTTTTTTAAACCTGAGCAAGTTGGGATTTATCAACAATAGATGGAAACTCTGGTTGCTTTCATGGGTTCATGGTTTTGCATACCGATGTTAGCTATGTAACCTCTGGTCTTGATGTCATTGGGGGACTAGATTGAAGTGTAGGTGTTTTTGGGATGGTGGTCTGTTGGTTTTTTGTTGAATTCCAATAAACTTCCAAAATATTA

Function

NR:

description
40S ribosomal protein S19

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02966 RP-S19e, RPS19; small subunit ribosomal protein S19e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624488.2 True 785 mRNA 0.51 6 22525184 22531056

Neighbor

gene id symbol gene type direction distance location
bcam LOC106577531 coding downstream 26038 22399657 ~ 22499146 (-)
LOC110537898 LOC106605692 coding downstream 209116 22314451 ~ 22316068 (-)
LOC110537882 LOC106577487 coding downstream 271698 22236828 ~ 22253486 (-)
LOC110537877 LOC106577478 coding downstream 290260 22229800 ~ 22234924 (-)
LOC110537752 LOC106577440 coding downstream 326344 22180756 ~ 22198840 (-)
cadm4 LOC106577561 coding upstream 19872 22550928 ~ 22749138 (-)
LOC110534479 LOC106578237 coding upstream 224296 22755352 ~ 22774315 (-)
si:ch211-79k12.2 LOC106605590 coding upstream 243452 22774508 ~ 22779710 (-)
LOC118938460 LOC106605577 coding upstream 248988 22780044 ~ 22791836 (-)
LOC110538019 zn576 coding upstream 263130 22794186 ~ 22803401 (-)
G123088 NA non-coding downstream 50980 22473454 ~ 22474204 (-)
G123044 NA non-coding downstream 140388 22384146 ~ 22384796 (-)
G122967 apoa2 non-coding downstream 169112 22354585 ~ 22356072 (-)
G122973 NA non-coding downstream 178556 22342611 ~ 22346628 (-)
G123149 NA non-coding upstream 79694 22610750 ~ 22624269 (-)
G123150 NA non-coding upstream 80970 22612026 ~ 22616872 (-)
G123158 NA non-coding upstream 104986 22636042 ~ 22660713 (-)
G123247 NA non-coding upstream 235197 22766253 ~ 22767773 (-)
G122972 NA other downstream 147024 22376153 ~ 22378160 (-)
LOC110537842 NA other downstream 367650 22120579 ~ 22157534 (-)
G122829 LOC106605673 other downstream 497467 22026299 ~ 22027717 (-)
G122761 LOC106578847 other downstream 669283 21851433 ~ 21856413 (-)
G122733 LOC106592382 other downstream 712752 21796507 ~ 21812432 (-)
G123308 NA other upstream 473930 23004986 ~ 23005812 (-)
G123435 NA other upstream 654584 23185640 ~ 23199252 (-)
LOC110538355 LOC106577931 other upstream 749123 23279116 ~ 23281851 (-)
G124840 NA other upstream 1372783 23903839 ~ 23904677 (-)
LOC110538705 LOC106577653 other upstream 1628111 24144519 ~ 24172836 (-)

Expression


Co-expression Network