LOC110534479 (LOC106578237)


Basic Information

Item Value
gene id LOC110534479
gene name LOC106578237
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22755352 ~ 22774315 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942515.1
ACAACCCTGGAAGCCACGCCTCCTCCAGTATCAATAAGTATAGTGCCAGACGTTCCTTTCGACAGTCAGACGGATTTGCATTATTTGGATACAGACAGTGAAGCAGAGTGGGAATACTCATCAATACCCAGAATCCAATAACAAACATGAGAGGTTTTATACTCTTTGCGATTTTAGTAATTGCACATGCTCACAGCAGTATTgCGGCCCTGGTCATAAAGGGACCAGACAAGCCTGTTCTGGAGAACGATGAAGTCACCCTGGAATGTCTGCTTTCTGACTCAGAGCTCAACACCAGCCAAGTCCACTTTGAGAAGTTTTCCAAGTACATGAATAAGTGGTATCGGCTGGAGGAGGAGCCCATGTACCGCCGATGTATCCCTGATGTTATCTTGAGGCGTGAGGCGAGCCAACTGCTTCTGTCCATCCGCAGCATCCACAGCTACTTCCACCAGGGACTCTACCGCTGTGTCGCAGACAACGCCACGGCAACCGACAACTCCTCCCAGCCCCTGGCTATCACCATCAACTACATGCGTGAGCTGTCTGTGTACGATGTGTCCTCCTCCAGCCGGAAGTTCATCAAGGAAAACCTGCTTGTGACACTAGGCGAAGACGTAGAGGTGGAGTGCTCCACCACAGCCTCTGAGGCACCACAATACTTCTGGCAGAAATATGGAGAGGACTGGATCGTGCCCTCCTCCAAGCTGAGGCTGAAGAATGTGAGGATGGAGGATGGTGGAGACTACACCTGCATGGCTGAGCATCCCACCCTGTCCAGCCTGAAGAAGAGCAGCACCATCTCCATAACTGTGctgacagCCACCAACGGCCGTCTCAACCAAGCCTGGTACGACTCCACCAACCTGGTGTTGATGACCTCCGTGGCGGGGGCGGTTCTCCTGGTGCTCATCCTGTCTATCACCGTCTTCTTGGTCCGCAGGGCCAAGCAGGCCAAGAGCACCAAGGGACCCATtgATGACCACTCTCAGAAGAAGCCCATCTACACAGCCAGTGTGGAGTCTCTGGCCTCTACCAGTGGAGACAAACAACCACTGGTGTGACCGCGccaagagatggagaagagaagtagGGGAACAAATGGAGAAAGATGGTAAAGGGGGCAAGGGAGTGAGGAATAGGAAGGAGGGAAGATGTTGAGGTGGGAGGAGAGGTGCCTGGGTTATGGATGCAGAGTTGCAGTGAGCCAGGATGCAGAGTAAAATCGAAGCTATTATCAAAGGCTGGCTGCGTGTAAGAGGAGGGAGACAAATGATTGTTTTACTGGGGTGGTTTGCTTCCAGCGGGGTTGGCTGAAGTGTTCTTGAACAAAAGGTGTGCAATTTTCTCTTTATTGATTTCGCAACCTGCAAAATTGACATTCACTTTCTTATCTGAGGCAAGGCGAGGGGGAGGAGTCTTTTGTACTGTGTGAACCCTGAGCAGCTGCAGACCGGTTTCAGGAGGTTACCTTGAGATAAActgctcaccaccaccaccacttttGCAGCCTTGGGCTCACAAAAAGGAATGTCTCTTACGTTGCAAGTATGATGTGACTGCTGTATCACAAATGTGCCTTTTCCCCTCAATGCTTTTACGTGGTGTAGAATATTGGTGTGGATTTTTTCTCTCAAGGAAATGTATAACCTTATGTAGCATACTAGTGGTGATGCACTTCAAAGTATACAGACAAGATGTACACTTGTAGATTATTTTCTATCTCTATATTCCAATGACAACTAAAGCACTTTCAAACATTACCCTCAGAGCTATCTATTTGCTGTATTTCCTGTACTTTTAATATTCATGATATAAAGTACCTTTGAGACATTCTAATAGTAA
>XM_036942519.1
ACAACCCTGGAAGCCACGCCTCCTCCAGTATCAATAAGTATAGTGCCAGACGTTCCTTTCGACAGTCAGACGGATTTGCATTATTTGGATACAGACAGTGAAGCAGAGTGGGAATACTCATCAATACCCAGAATCCAATAACAAACATGAGAGGTTTTATACTCTTTGCGATTTTAGTAATTGCACATGCTCACAGCAGTATTgCGGCCCTGGTCATAAAGGGACCAGACAAGCCTGTTCTGGAGAACGATGAAGTCACCCTGGAATGTCTGCTTTCTGACTCAGAGCTCAACACCAGCCAAGTCCACTTTGAGAAGTTTTCCAAGTACATGAATAAGTGGTATCGGCTGGAGGAGGAGCCCATGTACCGCCGATGTATCCCTGATGTTATCTTGAGGCGTGAGGCGAGCCAACTGCTTCTGTCCATCCGCAGCATCCACAGCTACTTCCACCAGGGACTCTACCGCTGTGTCGCAGACAACGCCACGGCAACCGACAACTCCTCCCAGCCCCTGGCTATCACCATCAACTACATGCGTGAGCTGTCTGTGTACGATGTGTCCTCCTCCAGCCGGAAGTTCATCAAGGAAAACCTGCTTGTGACACTAGGCGAAGACGTAGAGGTGGAGTGCTCCACCACAGCCTCTGAGGCACCACAATACTTCTGGCAGAAATATGGAGAGGACTGGATCGTGCCCTCCTCCAAGCTGAGGCTGAAGAATGTGAGGATGGAGGATGGTGGAGACTACACCTGCATGGCTGAGCATCCCACCCTGTCCAGCCTGAAGAAGAGCAGCACCATCTCCATAACTGTGctgacagtgATGACCACTCTCAGAAGAAGCCCATCTACACAGCCAGTGTGGAGTCTCTGGCCTCTACCAGTGGAGACAAACAACCACTGGTGTGACCGCGccaagagatggagaagagaagtagGGGAACAAATGGAGAAAGATGGTAAAGGGGGCAAGGGAGTGAGGAATAGGAAGGAGGGAAGATGTTGAGGTGGGAGGAGAGGTGCCTGGGTTATGGATGCAGAGTTGCAGTGAGCCAGGATGCAGAGTAAAATCGAAGCTATTATCAAAGGCTGGCTGCGTGTAAGAGGAGGGAGACAAATGATTGTTTTACTGGGGTGGTTTGCTTCCAGCGGGGTTGGCTGAAGTGTTCTTGAACAAAAGGTGTGCAATTTTCTCTTTATTGATTTCGCAACCTGCAAAATTGACATTCACTTTCTTATCTGAGGCAAGGCGAGGGGGAGGAGTCTTTTGTACTGTGTGAACCCTGAGCAGCTGCAGACCGGTTTCAGGAGGTTACCTTGAGATAAActgctcaccaccaccaccacttttGCAGCCTTGGGCTCACAAAAAGGAATGTCTCTTACGTTGCAAGTATGATGTGACTGCTGTATCACAAATGTGCCTTTTCCCCTCAATGCTTTTACGTGGTGTAGAATATTGGTGTGGATTTTTTCTCTCAAGGAAATGTATAACCTTATGTAGCATACTAGTGGTGATGCACTTCAAAGTATACAGACAAGATGTACACTTGTAGATTATTTTCTATCTCTATATTCCAATGACAACTAAAGCACTTTCAAACATTACCCTCAGAGCTATCTATTTGCTGTATTTCCTGTACTTTTAATATTCATGATATAAAGTACCTTTGAGACATTCTAATAGTAA

Function

NR:

description
contactin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942515.1 False 1845 mRNA 0.49 7 22755352 22774315
XM_036942519.1 True 1691 mRNA 0.47 6 22755352 22774315

Neighbor

gene id symbol gene type direction distance location
cadm4 LOC106577561 coding downstream 6214 22550928 ~ 22749138 (-)
rps19 LOC100689943 coding downstream 224296 22525184 ~ 22531056 (-)
bcam LOC106577531 coding downstream 256206 22399657 ~ 22499146 (-)
LOC110537898 LOC106605692 coding downstream 439284 22314451 ~ 22316068 (-)
LOC110537882 LOC106577487 coding downstream 501866 22236828 ~ 22253486 (-)
si:ch211-79k12.2 LOC106605590 coding upstream 193 22774508 ~ 22779710 (-)
LOC118938460 LOC106605577 coding upstream 5729 22780044 ~ 22791836 (-)
LOC110538019 zn576 coding upstream 19871 22794186 ~ 22803401 (-)
LOC110538006 LOC106605591 coding upstream 29132 22803447 ~ 22813135 (-)
LOC110538050 LOC106605593 coding upstream 48622 22822697 ~ 22838508 (-)
G123158 NA non-coding downstream 94639 22636042 ~ 22660713 (-)
G123149 NA non-coding downstream 131083 22610750 ~ 22624269 (-)
G123150 NA non-coding downstream 138480 22612026 ~ 22616872 (-)
G123090 NA non-coding downstream 180030 22481870 ~ 22575322 (-)
G123267 NA non-coding upstream 42948 22817263 ~ 22817587 (-)
G123268 NA non-coding upstream 43751 22818066 ~ 22818280 (-)
G123241 NA non-coding upstream 46285 22820600 ~ 22821816 (-)
G122972 NA other downstream 377192 22376153 ~ 22378160 (-)
LOC110537842 NA other downstream 597818 22120579 ~ 22157534 (-)
G122829 LOC106605673 other downstream 727635 22026299 ~ 22027717 (-)
G122761 LOC106578847 other downstream 899451 21851433 ~ 21856413 (-)
G122733 LOC106592382 other downstream 942920 21796507 ~ 21812432 (-)
G123308 NA other upstream 230671 23004986 ~ 23005812 (-)
G123435 NA other upstream 411325 23185640 ~ 23199252 (-)
LOC110538355 LOC106577931 other upstream 505864 23279116 ~ 23281851 (-)
G124840 NA other upstream 1129524 23903839 ~ 23904677 (-)
LOC110538705 LOC106577653 other upstream 1384852 24144519 ~ 24172836 (-)

Expression


Co-expression Network