si:ch211-79k12.2 (LOC106605590)


Basic Information

Item Value
gene id si:ch211-79k12.2
gene name LOC106605590
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22774508 ~ 22779710 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624514.2
GAAATAATTTGTCAAATCCGGCGAAGATAACACAAGTAGGGAAATGTGGCGGGCGTAAAGAACACACAACAGCTTGCAATATATATCCCTTTCAGTGTCGATCGGAAGACCGTTGGGTTACGAAGCGCAAATTCCTTTCTCTTTCTTCGAGCAATGTAGGCTGATGAAACGAACAGACGGCAAAAAACTTTGTATAACTGTACACATTATTCTACATGGACAAAGACAAGTTCGCTGTGAGCCATGACCCATGCTCCTGGTTGGAGATGCACCAGTTCATTGGAGACCTGATGGTGTCTGGGGGGGCTCTGGGGCTAAAAGACGCCCCACCAGCAGGCCCAGGCTCAGCCCCAGGCTCAGCCCAGCCCAGACAGGTCCAGGTCCAGGCAGAGAGCATTAGAGAGGCCAGAGAAATCAGTGGACAAGCTCAGCACCATACCTGCACTTGCCCTGGCTGCCCATACTCTTCCTCATTTTCCTCCTTCCAGACCATAAAGCCCAGAGGCACTGTGTCCTCACAGCCCGAGCCCAGCAGCACCTACAGCCCAGAGCTCAGTCAGCCCCATAGTCAGGACAAGGAGACCAGCACCCATAGCCCCAGCCCAGCccctaccacttccactaaccAGGGTACTTCTTCACCAAGCCCCCTGCCTCAAATTCCCACCTTCCCTTGTTTCTGCTGCCGCCGGGGCTTCCAGACCTGCACCCAGCTACTGCACCACCAACAGGGGGCAGCAGACTTTCCCTTCTCCCAGACGCacacccactaccaccaccactgccCACTTACCACCTgcctgccccaccaccactccCACCATGGCCTGTCCCCTGGCACCTTCCCCTGCCTGTCCTGCCAGCATTCCTTCCCCTCCTGCTCCCAGCTCCTCCACCACCAGCAGGGCCACAAACCCCCCCAGAACCATGTTGGAGGGGTGACCACAGTGTCCCCCACCCTACACCCATGCATGCACTGTCCAGCCTCCTTCCCCCGACCCTCTCAGCTGCTACAGCACCAGCGCACCCAGCACGCTCACAAGGCTGGTGGCTTCCTGTGCACTGAGTGCGGGCGCGCCTTCAACTCCCACTCCAACCTCCGCATCCACCTCAACGTACACACCGGCGCCCGACCCTACTCATGCCCTGACTGCGGCAAGAGTTTCAGCCAGTCGGGAGCATTGAAGATCCACCGTCGCATCCACACTGGGGAGAGACCCTATGCCTGCACCTACTGTGGGAGGGGCTTCCCCCACCTGGCCGGGGTCCGGGCCCACCAAAGGACCCACACAGGTGAGAAGCCCTACCGCTGCACCCAGTGTGGGAAGTGCTTCACCCAGTCGGGGGCACTGAAGATCCACACAAGGATCCACACCGGGGAACGGCCGTTTGTGTGCAGCCTCTGTGGGAAGGGCTTCTCCAACCGCTCCGGCATCCGCTTCCACCAGCGCACTGTCCATGGGATGGTGTCGGATatgggagggggtggaggagccGGTGGGTCCCATAGGGGGAGACTGAGTCTAGGCAGCTCAGCTGCTGTGGGACGCCCCAGTGCCAATCCAAACAGGATACGCAACAGCCCCCATACTGACGTGTGCTCTAGCATTACTCCTGCCCCGACCAAAATCCTTTCCCCTGGGTCTCTCCTTGCTCCTCCAGGGTCAGGTCTGACTATAACCTCAGACAAAGAGCCCCAGTTCCAGTCTAGCGGTGTGAAGATCCCCTCCGGAAGAGCAGAACCAGACAGTAGCAGGGAAGGGAGGGCTCAGCTGTACACCTGTGAGGACTGTGGGCTGTGTTTTGGGGACGCTCCCTCCAGAAACAGACACCAAACTCTGGAGCACTACTCCACAgaaggggtagaggaggatgaCCTGGGGGACACTgagggggaggggtgagagagagggaggggtgagggggagagatggaagcTTGATGCAGTAGATTGTTGGATCAAAGGCTAAGGGAGAGGTGGGAAAACTGGAATGGGAACATGGAGAGGTGAGAAGAGGCTGAAAGTTTGAGACTCATCGAGGAGGACCATGTGTAAAGGCATGTTGGTGAAGGGAGGGTGAGAAGACAAAGTTAAAAATTAAGTGTCTATCAATGGGATCTATGACATATTTCAGATTGAATTCCACTTTAAAAGATGCACTCCAGGCCTAAGGAAGTCTTTTGCGATAGTTTTCACATTTTGTGAGTCCAATTTTCTCTTTGTCAAAAAGATTggattggatgcgcgctgtgttaagaagcagggttgtgtatcggaggacgcatgactttcaaccttcgtctctcccgagcccgtacgggagttgtagcaatgagacaagatagtagctactaaacaattggataccacaaaattggggagaaaaagggcaaaaaaaaaagaagaaaaagtcAAGTACCATGATTAGGCTACTAAAGATGATATTTGAGAGCTTTggattctttatttattttactggtTTAGCAAAATCCACAGATATCATCATCTCAAATATATGACACTGTAAGACAttgtcccatagggcagcgcacaattggcccagcgtcgtccgggttaggggagggtttgggcgGGGTAGgccgtaaataagaatttgttcttaattgacttgcctagttaaataaaggtacataaAAAGTAAGTGCAGAAGTGAGGATATGTTGTATTTAGCATCATGAtgtaatatatattttgtaaTAATAGAAACTGATATTGTATGGCCCTTATATACTTGCGTATATCAGTTTATCTAATTAGCTCATTGTGCCTTGATCTCAGATTAGATCATTCTagtacataaaaaaaatacatatatttgcaTAAACCACACTGTACTAAACTTCATGACAACTGATATGTTAGTGGTTTAGTGATTTTATTGAGGATCAATAGCTCCAATGTTGGAAGATATTTCTTATACAAAGTATATTTTTATCAGGATCATTTCTCAGAGACATATGGTTTGTTGACCTGTTTTCTATTGCTTCAGATCTCCACCTAGTGGACATTTAGAAGCATAGCagcagaaacacagacactgaaaCTAGTCAGTCTAGGCTACAAGTGTCACTCATTCCACGGAGGTCCGAGTGTCTTCGGGTTTTAGCTGCTCCCTTGTCCTTGATTTATGAATTgcggtcactaattagtaaggaactccccacacGTGGTTGTCTTGGGCTTAATGGAAAGGAAAAGACAAAAACCTgtagacactaggccctccatggaatgagtttgacacccttctctagatcagtggttcccaaccagtgGTACTAGAACCCCTGGGAGTACTTGGCCTATCCATAGGGGGTACTTGAGAAaatactggtaaaatgcacatgagagGGTATTTCagaagtggaggctgctgaggggaggatggctcatgataatggccggaatggagtaaatggaatggaatggaatcaaacgcATGAAAACCatttgtttgatgtatttgataccattccaccgattccgctccagccattatcatGAGCGTATCCTAccaaatgaaggtgccaccaacccccTGTGCTTCAGGAGTAGTCCAGACCGAGCACAATTCAGGTGAGGGTCCAGTTACTGAAAAAGGTTGAACTATTGATCTAGATATCTGTGTTGCCTCCCACTATTTTCAAATGTTACTGTTGCCTGTGGTCTTTATTTTCCAGACACTGAAACTATTGAAACTTCTGTATGGCCAACTTCCCTTCTTTGGTATTCTGTAGCCTCTAGGGCAGTTCAAAAGACTGATTGAGGACCTTTTTACCGAAGATTGTGTTGGTTTTCTATGATTGTGTGTTGATGTGAATATTTGTCTATATtgatgtatatagtgtgtatgtatacagacagggctcatctgtaaaagagatgTCTCCCTGTCAAAATACATATTATATATCCATCTGTTTTTCCACGTAGACCAGTTTTCAGTAAATGATTGCCCTCAGTCATTCAGGGTTGTTTAAAAATATCATCTATAGGGCCTTTTGTAATGATAATTTAATTCCAGCCTCTTTGACCCAAGATGTGCTTCTGAGTGTCTCCGATGTTTACTAACTGGTATAAACTGATACTAAAACCACGGTCAGCTGGGATTCCCAACAACAGGCAAGGCTTGTACAATTATCTGGGAGATCTTATATCAGACATATAGCATGACAAGCCACTAGTGATGACACTACAGAAATAGCAGAATTGGTTTACCTAGAAACAGAAAAATGAAAAACGTATGAGACGGGCGTTCTTTGGAGTATGACAAATCAAAATGTGTCCATGAAAAGGCTCTGTTTCAAGTTTGTTAACGGTTCCTCGAAACTCAACAGCATTTCACAGTACCTTTTGGAAAGAGATTATTTTGTTATAGGTTTTGCAAGTGTTTATTTGGTCGCGCTGAAACGATCTCAAGTGCTGCGTAAAATCAGGCGACGCAGAACAGTCATTCATGGGTAAAGAGCGTCCTTCCACTTGTCATGATATGTAATTAAGTGTAAACGGAACCATTTTCGGACCCACCTGAAGTCGGGACAGGTTTGGTTAATGATAGGTAATTGACCTATAGATGGCAGTACGTCTCCAATCATGATCCTGGTGAGCTGCCGTCCTGAGCGAAAaactacaggagggtagctctccaggaaccggGTTGGAGAACCATGCATGACACGGTCAGTGCTATCTGGGATCTTTGGGGACATCCCTACCCCATTAAAGTAGAATTTTAAAATGCTAGGTAAGTGCTATGGTTGTG
>TU142369
TGTACTAAACTTCATGACAACTGATATGTTAGTGGTTTAGTGATTTTATTGAGGATCAATAGCTCCAATGTTGGAAGATATTTCTTATACAAAGTATATTTTTATCAGGATCATTTCTCAGAGACATATGGTTTGTTGACCTGTTTTCTATTGCTTCAGATCTCCACCTAGTGGACATTTAGAAGCATAGCagcagaaacacagacactgaaaCTAGTCAGTCTAGGCTACAAGTGTCACTCATTCCACGGAGGTCCGAGTGTCTTCGGGTTTTAGCTGCTCCCTTGTCCTTGATTTATGAATTgcggtcactaattagtaaggaactccccacacGTGGTTGTCTTGGGCTTAATGGAAAGGAAAAGACAAAAACCTgtagacactaggccctccatggaatgagtttgacacccttctctagatcagtggttcccaaccagtgGTACTAGAACCCCTGGGAGTACTTGGCCTATCCATAGGGGGTACTTGAGAAaatactggtaaaatgcacatgagagGGTATTTCagaagtggaggctgctgaggggaggatggctcatgataatggccggaatggagtaaatggaatggaatggaatcaaacgcATGAAAACCatttgtttgatgtatttgataccattccaccgattccgctccagccattatcatGAGCGTATCCTAccaaatgaaggtgccaccaacccccTGTGCTTCAGGAGTAGTCCAGACCGAGCACAATTCAGGTGAGGGTCCAGTTACTGAAAAAGGTTGAACTATTGATCTAGATATCTGTGTTGCCTCCCACTATTTTCAAATGTTACTGTTGCCTGTGGTCTTTATTTTCCAGACACTGAAACTATTGAAACTTCTGTATGGCCAACTTCCCTTCTTTGGTATTCTGTAGCCTCTAGGGCAGTTCAAAAGACTGATTGAGGACCTTTTTACCGAAGATTGTGTTGGTTTTCTATGATTGTGTGTTGATGTGAATATTTGTCTATATtgatgtatatagtgtgtatgtatacagacagggctcatctgtaaaagagatgTCTCCCTGTCAAAATACATATTATATATCCATCTGTTTTTCCACGTAGACCAGTTTTCAGTAAATGATTGCCCTCAGTCATTCAGGGTTGTTTAAAAATATCATCTATAGGGCCTTTTGTAATGATAATTTAATTCCAGCCTCTTTGACCCAAGATGTGCTTCTGAGTGTCTCCGATGTTTACTAACTGGTATAAACTGATACTAAAACCACGGTCAGCTGGGATTCCCAACAACAGGCAAGGCTTGTACAATTATCTGGGAGATCTTATATCAGACA
>TU142367
GGAAAACTGGAATGGGAACATGGAGAGGTGAGAAGAGGCTGAAAGTTTGAGACTCATCGAGGAGGACCATGTGTAAAGGCATGTTGGTGAAGGGAGGGTGAGAAGACAAAGTTAAAAATTAAGTGTCTATCAATGGGATCTATGACATATTTCAGATTGAATTCCACTTTAAAAGATGCACTCCAGGCCTAAGGAAGTCTTTTGCGATAGTTTTCACATTTTGTGAGTCCAATTTTCTCTTTGTCAAAAAGATTggattggatgcgcgctgtgttaagaagcagggttgtgtatcggaggacgcatgactttcaaccttcgtctctcccgagcccgtacgggagttgtagcaatgagacaagatagtagctactaaacaattggataccacaaaattggggagaaaaagggcaaaaaaaaaagaagaaaaagtcAAGTACCATGATTAGGCTACTAAAGATGATATTTGAGAGCTTTggattctttatttattttactggtTTAGCAAAATCCACAGATATCATCATCTCAAATATATGACACTGTAAGACAttgtcccatagggcagcgcacaattggcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624514.2 False 4784 mRNA 0.48 3 22774508 22779710
TU142369 False 1333 lncRNA 0.48 1 22775107 22776439
TU142367 True 581 lncRNA 0.44 1 22776731 22777311

Neighbor

gene id symbol gene type direction distance location
LOC110534479 LOC106578237 coding downstream 193 22755352 ~ 22774315 (-)
cadm4 LOC106577561 coding downstream 25370 22550928 ~ 22749138 (-)
rps19 LOC100689943 coding downstream 243452 22525184 ~ 22531056 (-)
bcam LOC106577531 coding downstream 275362 22399657 ~ 22499146 (-)
LOC110537898 LOC106605692 coding downstream 458440 22314451 ~ 22316068 (-)
LOC118938460 LOC106605577 coding upstream 334 22780044 ~ 22791836 (-)
LOC110538019 zn576 coding upstream 14476 22794186 ~ 22803401 (-)
LOC110538006 LOC106605591 coding upstream 23737 22803447 ~ 22813135 (-)
LOC110538050 LOC106605593 coding upstream 43227 22822697 ~ 22838508 (-)
LOC118938551 LOC106605594 coding upstream 60278 22839988 ~ 22845481 (-)
G123247 NA non-coding downstream 6735 22766253 ~ 22767773 (-)
G123158 NA non-coding downstream 113795 22636042 ~ 22660713 (-)
G123149 NA non-coding downstream 150239 22610750 ~ 22624269 (-)
G123150 NA non-coding downstream 157636 22612026 ~ 22616872 (-)
G123267 NA non-coding upstream 37553 22817263 ~ 22817587 (-)
G123268 NA non-coding upstream 38356 22818066 ~ 22818280 (-)
G123241 NA non-coding upstream 40890 22820600 ~ 22821816 (-)
G123234 NA non-coding upstream 59061 22838771 ~ 22839536 (-)
G122972 NA other downstream 396348 22376153 ~ 22378160 (-)
LOC110537842 NA other downstream 616974 22120579 ~ 22157534 (-)
G122829 LOC106605673 other downstream 746791 22026299 ~ 22027717 (-)
G122761 LOC106578847 other downstream 918607 21851433 ~ 21856413 (-)
G122733 LOC106592382 other downstream 962076 21796507 ~ 21812432 (-)
G123308 NA other upstream 225276 23004986 ~ 23005812 (-)
G123435 NA other upstream 405930 23185640 ~ 23199252 (-)
LOC110538355 LOC106577931 other upstream 500469 23279116 ~ 23281851 (-)
G124840 NA other upstream 1124129 23903839 ~ 23904677 (-)
LOC110538705 LOC106577653 other upstream 1379457 24144519 ~ 24172836 (-)

Expression


Co-expression Network